Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.4e-157 557.0 282 100.0
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.7e-99 365.2 267 71.5
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 1.5e-97 360.1 269 70.3
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.3e-96 357.1 292 66.4
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 4.8e-96 355.1 297 64.6
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 6.3e-96 354.8 294 64.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 6.3e-96 354.8 295 64.1
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 1.1e-95 354.0 294 65.6
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.1e-95 354.0 294 65.3
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 1.4e-95 353.6 287 64.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.8e-95 353.2 287 67.6
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.1e-95 352.4 296 63.2
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 3.1e-95 352.4 292 67.1
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 4.1e-95 352.1 293 65.2
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.1e-95 352.1 296 63.2
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 4.1e-95 352.1 286 66.1
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.0e-95 351.3 288 64.6
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 7.0e-95 351.3 288 64.9
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 7.0e-95 351.3 289 66.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.2e-94 350.5 291 65.6
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.6e-94 350.1 294 63.3
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.5e-94 349.0 292 62.7
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 3.5e-94 349.0 177 99.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 4.5e-94 348.6 283 65.0
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 4.5e-94 348.6 296 62.5
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 7.7e-94 347.8 289 64.0
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 7.7e-94 347.8 294 65.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 7.7e-94 347.8 294 64.6
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.0e-93 347.4 294 65.0
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.0e-93 347.4 283 65.7
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.3e-93 347.1 286 65.7
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-93 347.1 286 65.7
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.3e-93 347.1 286 64.3
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.7e-93 346.7 284 63.7
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.7e-93 346.7 294 64.6
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.2e-93 346.3 288 65.6
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.9e-93 345.9 294 63.6
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 3.8e-93 345.5 289 64.7
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.8e-93 345.5 285 64.6
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 5.0e-93 345.1 289 65.1
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 5.0e-93 345.1 284 65.5
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 5.0e-93 345.1 289 65.1
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.5e-93 344.7 287 63.4
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.5e-93 344.4 289 64.0
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 8.5e-93 344.4 292 63.7
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.1e-92 344.0 286 65.0
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.1e-92 344.0 288 63.9
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 1.5e-92 343.6 294 63.3
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.9e-92 343.2 296 62.8
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 2.5e-92 342.8 285 63.5
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.5e-92 342.8 287 63.4
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 4.2e-92 342.0 292 63.4
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 5.5e-92 341.7 289 63.0
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 5.5e-92 341.7 300 63.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 5.5e-92 341.7 283 63.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 7.2e-92 341.3 292 63.4
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 9.4e-92 340.9 287 62.7
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 9.4e-92 340.9 282 62.1
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.2e-91 340.5 289 63.3
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.6e-91 340.1 286 64.0
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 2.1e-91 339.7 304 62.8
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.7e-91 339.3 294 63.3
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.7e-91 339.3 285 65.3
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.7e-91 339.3 287 64.5
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.6e-91 339.0 273 67.4
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 6.1e-91 338.2 283 64.0
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 6.1e-91 338.2 287 62.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 6.1e-91 338.2 295 63.1
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 8.0e-91 337.8 251 70.1
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 8.0e-91 337.8 288 64.2
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.4e-90 337.0 287 62.7
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.8e-90 336.7 282 64.5
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.3e-90 336.3 261 68.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 4.0e-90 335.5 287 64.5
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 4.0e-90 335.5 261 68.2
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.2e-89 334.0 286 61.9
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.2e-89 334.0 254 70.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.2e-89 334.0 281 61.9
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 2.6e-89 332.8 278 62.2
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 3.4e-89 332.4 295 61.4
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.4e-89 332.4 281 63.0
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 3.4e-89 332.4 341 55.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 4.4e-89 332.0 225 76.0
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.7e-89 331.6 290 60.7
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 9.8e-89 330.9 284 63.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.3e-88 330.5 261 67.0
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 1.3e-88 330.5 287 63.1
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.2e-88 329.7 311 59.5
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.8e-88 329.3 288 62.5
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.8e-88 329.3 312 59.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.8e-88 329.3 280 62.9
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 3.7e-88 328.9 291 61.2
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.3e-88 328.2 290 60.3
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.4e-87 327.0 285 62.8
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.8e-87 326.6 290 62.8
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.8e-87 326.6 226 74.8
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.8e-87 326.6 215 75.8
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 4.1e-87 325.5 286 63.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 7.0e-87 324.7 282 62.4
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 9.1e-87 324.3 275 64.4
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.2e-86 323.9 297 61.3
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.6e-86 323.6 266 65.8
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.6e-86 323.6 273 64.1
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-85 320.5 244 70.1
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 2.2e-85 319.7 244 70.1
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 2.2e-85 319.7 271 64.2
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 6.5e-85 318.2 220 74.1
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 6.5e-85 318.2 280 61.8
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 2.5e-84 316.2 229 70.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 2.5e-84 316.2 290 59.3
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 5.5e-84 315.1 272 62.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 1.2e-83 313.9 228 72.4
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 4.7e-83 312.0 228 71.1
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 6.1e-83 311.6 222 69.4
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.4e-82 310.5 275 61.1
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 4.9e-80 302.0 235 67.7
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.4e-79 299.7 247 65.6
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 1.2e-78 297.4 246 65.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 2.3e-77 293.1 302 56.0
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 2.8e-75 286.2 226 70.4
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.0e-74 284.3 286 55.9
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 9.8e-73 277.7 222 59.9
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.9e-72 275.4 178 75.8
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 1.2e-70 270.8 236 63.6
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.5e-70 269.2 285 54.0
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 3.5e-70 269.2 259 54.4
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.3e-69 266.5 289 49.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.0e-69 265.4 275 54.2
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 5.0e-69 265.4 227 63.9
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 8.6e-69 264.6 243 58.4
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.1e-68 264.2 296 50.3
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 2.5e-68 263.1 220 63.6
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 5.6e-68 261.9 204 67.6
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 5.6e-68 261.9 217 60.4
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.2e-67 258.5 179 73.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.2e-65 254.2 208 59.6
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.4e-65 252.7 264 53.4
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 3.4e-65 252.7 174 69.0
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.2e-59 234.2 245 54.3
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.2e-51 207.6 105 98.1
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 1.4e-50 204.1 213 50.7
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.3e-50 203.4 160 66.9
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 3.1e-50 203.0 214 54.2
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 6.6e-45 185.3 136 67.6
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.6e-43 179.5 127 71.7
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 5.2e-42 175.6 235 47.7
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.6e-38 164.1 123 73.2
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.2e-32 143.7 81 82.7
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.4e-31 141.0 138 54.3
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 7.1e-31 138.7 82 82.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 8.7e-29 131.7 109 62.4
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.3e-27 127.9 73 80.8
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.4e-26 123.6 64 90.6
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 7.9e-14 82.0 85 54.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 4.3e-12 76.3 66 65.2
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.0e-09 67.4 50 74.0
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.7e-08 64.3 45 73.3


User provided reference genes

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