Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 0.0e+00 1163.7 582 100.0
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 0.0e+00 1137.5 576 98.6
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.1e-259 899.8 576 77.6
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 1.2e-258 896.3 581 76.4
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 4.6e-258 894.4 594 75.4
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 4.6e-258 894.4 544 79.2
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 1.0e-257 893.3 545 79.3
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 3.0e-257 891.7 591 75.8
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 8.6e-257 890.2 544 80.0
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 1.5e-256 889.4 544 78.9
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 1.9e-256 889.0 598 73.7
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 2.5e-256 888.6 544 78.9
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.5e-256 888.6 544 78.7
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 3.3e-256 888.3 546 78.9
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 5.6e-256 887.5 578 75.6
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 7.3e-256 887.1 590 74.4
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 1.6e-255 885.9 544 78.1
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 2.1e-255 885.6 546 78.8
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.8e-255 885.2 555 77.7
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 4.7e-255 884.4 593 74.5
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 4.7e-255 884.4 546 79.3
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 4.7e-255 884.4 544 78.3
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 6.2e-255 884.0 544 77.9
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 8.1e-255 883.6 581 75.2
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 8.1e-255 883.6 544 79.4
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.1e-254 883.2 598 73.6
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 1.8e-254 882.5 542 78.6
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 3.1e-254 881.7 584 75.5
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 4.0e-254 881.3 544 78.1
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 5.2e-254 880.9 556 77.3
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 5.2e-254 880.9 542 78.6
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 6.8e-254 880.6 586 73.9
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 1.2e-253 879.8 581 74.9
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 1.2e-253 879.8 583 74.8
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.5e-253 879.4 594 73.7
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 2.0e-253 879.0 575 74.3
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 2.0e-253 879.0 586 74.7
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.6e-253 878.6 583 74.1
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 3.4e-253 878.2 581 74.9
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 5.8e-253 877.5 545 77.8
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 7.5e-253 877.1 583 74.6
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 7.5e-253 877.1 581 74.7
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 9.8e-253 876.7 583 74.8
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.7e-252 875.9 546 77.8
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 2.9e-252 875.2 581 74.5
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 3.7e-252 874.8 583 73.9
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 3.7e-252 874.8 547 77.7
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 4.9e-252 874.4 539 78.1
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 6.4e-252 874.0 552 77.9
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 6.4e-252 874.0 579 73.9
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.1e-251 873.2 579 73.7
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.1e-251 873.2 580 74.8
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 1.1e-251 873.2 585 74.2
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.4e-251 872.8 585 74.7
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.9e-251 872.5 588 73.8
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.9e-251 872.5 544 78.5
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 1.9e-251 872.5 588 74.5
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 2.4e-251 872.1 581 73.8
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 4.1e-251 871.3 545 77.8
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 4.1e-251 871.3 545 78.0
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 4.1e-251 871.3 582 74.6
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 5.4e-251 870.9 545 78.0
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 9.2e-251 870.2 611 71.8
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-250 869.8 585 74.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.6e-250 869.4 581 74.5
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 3.5e-250 868.2 548 77.7
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 4.6e-250 867.8 557 75.9
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 4.6e-250 867.8 548 77.7
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 1.3e-249 866.3 559 77.5
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 2.3e-249 865.5 544 76.8
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 2.3e-249 865.5 544 78.3
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.0e-249 865.1 593 72.7
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 3.9e-249 864.8 570 75.3
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 8.6e-249 863.6 541 77.1
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 1.5e-248 862.8 539 78.1
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 1.9e-248 862.4 601 72.7
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.6e-247 858.2 595 72.3
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 8.1e-247 857.1 548 76.5
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.1e-246 855.1 607 71.0
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.0e-245 852.4 580 72.6
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 5.8e-245 850.9 588 72.3
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 4.1e-243 844.7 570 73.9
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 4.1e-243 844.7 544 75.4
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 5.4e-243 844.3 563 73.2
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.1e-242 842.4 584 72.1
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 1.1e-240 836.6 588 70.2
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 7.3e-240 833.9 593 71.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.4e-238 828.9 561 72.7
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 2.6e-237 825.5 577 72.3
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.0e-233 812.0 585 69.6
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 6.6e-233 810.8 531 76.1
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 4.8e-231 804.7 531 75.5
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 8.1e-231 803.9 623 67.6
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 7.6e-229 797.3 577 70.5
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 8.4e-228 793.9 570 70.5
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.4e-227 792.3 645 64.5
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 2.3e-225 785.8 548 68.8
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 5.6e-224 781.2 543 72.7
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.3e-223 780.0 588 65.6
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.3e-223 780.0 480 77.7
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 2.1e-223 779.2 582 68.4
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 4.9e-220 768.1 533 69.8
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 1.4e-219 766.5 466 78.5
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 3.2e-219 765.4 561 70.4
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 9.3e-219 763.8 594 64.6
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 6.2e-215 751.1 563 66.4
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 5.3e-214 748.0 463 77.8
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.4e-212 740.7 543 68.9
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 5.5e-203 711.4 437 78.0
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.2e-202 710.3 524 68.1
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.0e-192 676.4 554 62.6
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 9.4e-187 657.5 530 61.9
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 6.1e-178 628.2 526 63.1
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.0e-177 625.5 405 76.0
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.5e-160 570.5 510 57.3
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.5e-157 559.3 547 54.1
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 1.2e-154 550.8 357 77.0
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 6.4e-151 538.5 554 54.0
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 2.7e-149 533.1 417 67.4
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 3.0e-148 529.6 341 77.1
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 1.7e-135 487.3 565 48.7
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.2e-122 444.5 257 83.7
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 2.5e-91 340.5 239 70.3
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 5.0e-87 326.2 250 64.8
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 2.2e-66 257.7 403 42.9
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 1.5e-62 245.0 208 59.6
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 5.0e-55 219.9 189 58.2
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.9e-46 191.4 116 81.0
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 4.1e-41 173.7 150 64.7
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-40 172.2 157 58.0
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 6.8e-36 156.4 118 61.0
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 2.6e-35 154.5 101 73.3
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 8.6e-31 139.4 315 31.7
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 4.9e-26 123.6 312 32.4
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 1.1e-22 112.5 76 76.3
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 2.9e-18 97.8 57 78.9
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 2.4e-17 94.7 58 77.6
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 8.1e-13 79.7 126 42.1
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 1.2e-11 75.9 111 44.1
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 2.0e-11 75.1 116 42.2
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.3e-10 72.4 41 75.6
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 2.9e-10 71.2 45 64.4
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 1.9e-09 68.6 42 73.8
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 7.1e-09 66.6 41 75.6
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 1.0e-07 62.8 52 65.4
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.7e-07 62.0 197 23.4
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 2.3e-07 61.6 37 78.4
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 8.7e-07 59.7 197 23.4
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.9e-06 58.5 193 24.9
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 3.3e-06 57.8 112 36.6


User provided reference genes

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