Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 4.2e-236 820.8 385 100.0
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 3.3e-180 635.2 345 89.9
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 7.9e-150 534.3 314 77.4
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 8.2e-147 524.2 359 70.5
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.3e-144 516.9 316 75.3
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.7e-144 516.5 313 75.7
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.7e-144 516.5 313 75.7
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 3.8e-144 515.4 313 75.4
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.5e-144 514.2 315 74.9
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.1e-143 513.8 318 75.2
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.9e-143 513.1 355 69.0
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 3.2e-143 512.3 313 74.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 4.2e-143 511.9 312 76.0
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 7.2e-143 511.1 307 76.5
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 9.4e-143 510.8 310 76.5
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 9.4e-143 510.8 312 74.7
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-142 509.6 312 75.3
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 7.9e-142 507.7 310 76.5
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.0e-141 507.3 309 76.7
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.0e-141 507.3 311 75.9
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 2.3e-141 506.1 315 73.7
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 2.3e-141 506.1 312 76.0
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.0e-141 505.8 314 74.2
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.2e-141 505.0 311 75.2
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.7e-141 504.6 310 74.2
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.1e-140 503.8 310 74.2
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.1e-140 503.8 307 75.6
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.5e-140 503.4 310 74.2
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 4.4e-140 501.9 312 74.0
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 7.4e-140 501.1 311 74.3
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.4e-140 501.1 313 74.8
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 7.4e-140 501.1 310 74.5
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 7.4e-140 501.1 308 74.7
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 7.4e-140 501.1 310 72.9
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 9.7e-140 500.7 319 74.6
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 9.7e-140 500.7 311 74.3
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 9.7e-140 500.7 311 74.9
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.3e-139 500.4 310 74.5
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-139 500.0 313 74.4
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.7e-139 500.0 314 74.2
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 2.2e-139 499.6 313 74.8
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.2e-139 499.6 313 74.8
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.2e-139 499.6 370 64.1
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 2.8e-139 499.2 304 76.6
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 2.8e-139 499.2 313 73.8
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.8e-139 499.2 311 74.6
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.8e-139 499.2 313 73.5
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 6.3e-139 498.0 313 74.1
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.4e-138 496.9 312 73.1
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 4.1e-138 495.4 310 73.2
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 4.1e-138 495.4 312 76.0
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 4.1e-138 495.4 312 76.0
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 5.3e-138 495.0 311 74.0
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 7.0e-138 494.6 309 74.1
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 7.0e-138 494.6 338 68.6
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.2e-137 493.8 340 67.9
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.0e-137 493.0 313 74.8
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 2.0e-137 493.0 304 75.0
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 2.6e-137 492.7 310 73.5
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 2.6e-137 492.7 304 75.7
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.7e-136 490.0 309 72.8
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 5.0e-136 488.4 310 73.2
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 6.5e-136 488.0 312 72.8
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 8.5e-136 487.6 343 67.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.5e-135 486.9 304 73.4
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.5e-135 486.9 338 68.6
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 1.9e-135 486.5 309 72.2
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.2e-135 485.3 323 70.0
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 5.5e-135 485.0 323 70.9
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 7.2e-135 484.6 311 72.3
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 9.4e-135 484.2 310 73.2
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.6e-134 483.4 310 72.3
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.1e-134 483.0 310 73.2
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 2.1e-134 483.0 310 72.9
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 2.1e-134 483.0 310 70.3
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.4e-133 480.3 317 71.0
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 1.8e-133 479.9 343 66.5
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.8e-133 479.9 313 71.6
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 3.0e-133 479.2 311 71.4
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.2e-133 478.4 316 67.4
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 6.7e-133 478.0 310 71.0
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 8.8e-133 477.6 310 71.9
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 8.8e-133 477.6 317 70.3
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 1.2e-132 477.2 311 70.4
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.5e-132 476.9 311 73.3
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.0e-132 476.5 315 70.2
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.6e-132 476.1 317 70.0
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 3.3e-132 475.7 310 71.9
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 4.4e-132 475.3 311 71.1
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 4.4e-132 475.3 311 71.1
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 5.7e-132 474.9 310 71.3
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 2.8e-131 472.6 310 71.9
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 8.2e-131 471.1 311 69.8
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 1.1e-130 470.7 302 71.9
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 4.1e-130 468.8 307 70.7
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 5.3e-130 468.4 308 69.5
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 2.0e-129 466.5 304 71.1
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 4.5e-129 465.3 309 70.2
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.2e-126 457.2 307 71.3
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 5.2e-125 451.8 279 72.8
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 6.8e-125 451.4 319 67.7
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.3e-123 447.2 290 68.6
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 1.7e-123 446.8 305 67.9
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 8.3e-123 444.5 304 68.1
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 1.1e-119 434.1 312 62.8
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 3.2e-119 432.6 309 63.1
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.0e-117 426.0 318 65.7
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.8e-117 424.9 319 65.8
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 8.3e-115 417.9 310 64.5
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.6e-113 413.7 305 62.0
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 2.0e-113 413.3 307 65.8
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.9e-112 409.5 334 56.9
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 3.6e-110 402.5 310 59.0
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 8.9e-109 397.9 307 63.8
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.4e-106 389.8 313 59.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 5.4e-106 388.7 329 59.6
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 5.4e-106 388.7 329 59.6
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.6e-104 381.7 442 48.2
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 1.1e-103 380.9 231 73.6
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 6.2e-94 348.6 210 77.1
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 8.9e-93 344.7 216 72.7
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 3.3e-87 326.2 200 75.5
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 2.4e-85 320.1 199 72.9
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.6e-81 307.4 251 59.8
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 7.3e-79 298.5 184 74.5
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 6.2e-78 295.4 176 75.6
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-77 294.7 305 47.9
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 7.3e-71 271.9 167 74.3
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 6.7e-64 248.8 312 46.5
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.9e-48 196.4 208 47.6
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.2e-36 158.3 97 71.1
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.5e-35 152.1 99 73.7
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 7.9e-33 145.6 87 74.7
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.8e-30 136.3 97 66.0
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.1e-26 125.2 102 56.9
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.9e-26 124.4 332 29.5
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 2.1e-25 120.9 79 74.7
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.7e-25 120.6 73 71.2
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.7e-25 119.8 82 62.2
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.4e-21 107.5 319 27.0
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.0e-16 92.0 65 70.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 7.5e-15 85.9 240 27.9
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 5.9e-12 76.3 321 25.2
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.1e-09 67.8 48 64.6
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.1e-09 66.2 49 59.2
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 5.2e-08 63.2 44 59.1


User provided reference genes

Program Settings