Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1999.2 1024 100.0
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1949.9 1011 99.2
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 1343.9 1023 69.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1320.8 1026 68.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 1319.3 1026 68.1
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 1314.7 1004 69.5
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 1287.7 1021 66.8
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 1286.9 1019 66.3
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 1276.2 1023 66.5
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 1270.4 1010 66.3
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1270.4 1000 67.4
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1268.8 1019 66.1
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 1264.2 1018 65.8
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1261.5 993 67.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 1261.1 1028 65.8
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 1258.0 1018 65.7
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 1256.1 998 66.3
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 1253.8 1017 65.3
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 1253.4 1018 65.7
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1253.0 1017 65.3
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 1250.7 1018 65.8
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 1250.7 1007 65.6
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 1249.6 997 66.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1248.0 1017 64.9
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1246.9 1017 64.8
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1245.7 986 66.2
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 1245.3 1000 66.6
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 1244.6 1017 64.7
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 1244.6 1025 64.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 1243.4 1001 66.4
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 1242.6 1003 66.2
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1240.7 984 66.6
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 1239.2 996 66.4
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 1238.4 1000 65.7
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1237.2 1000 66.6
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1236.1 1000 65.5
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 1234.2 1003 65.7
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 1232.6 990 65.8
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 1232.2 1000 66.5
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 1230.7 993 65.8
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1228.8 989 65.3
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1228.4 997 65.0
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 1227.6 1000 66.2
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 1226.1 1014 64.5
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 1225.3 989 65.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 1222.6 996 64.9
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 1217.6 1000 65.5
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1217.2 1000 64.4
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 1216.1 1004 64.3
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 1214.9 1000 65.4
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 1212.2 1014 62.3
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 1208.0 1013 63.4
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 1206.8 1007 63.3
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 1206.0 983 65.5
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 1205.7 997 63.5
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 1203.0 1013 64.3
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 1201.8 1004 63.2
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 1199.9 998 63.8
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 1198.3 1006 64.5
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1196.8 1009 63.6
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 1196.8 1023 62.5
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 1196.0 1009 63.5
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 1196.0 1009 63.5
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 1194.5 1009 63.5
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1190.6 964 65.7
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 1190.3 983 63.6
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 1184.1 1004 63.3
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 1183.3 1012 63.1
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 1183.3 1002 63.2
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 1180.2 1001 63.5
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 1178.3 1003 62.9
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 1174.1 1006 62.8
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 1171.0 1001 62.2
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 1169.8 1019 61.5
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 1166.8 1003 62.5
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 1163.7 1017 61.9
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1156.0 986 62.8
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 1152.9 1019 61.3
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 1148.3 989 62.4
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1136.3 993 61.1
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 1126.3 1006 60.9
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1106.3 1019 60.6
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 5.3e-294 1014.6 972 57.8
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 5.3e-278 961.4 797 65.0
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 1.3e-276 956.8 816 64.6
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 8.3e-271 937.6 797 62.1
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 1.6e-269 933.3 1009 51.9
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 3.3e-267 925.6 1031 50.6
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 9.8e-264 914.1 803 60.9
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 3.7e-263 912.1 804 62.6
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 7.0e-262 907.9 1040 48.9
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 3.6e-258 895.6 1038 49.1
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 8.3e-255 884.4 802 60.2
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 1.9e-254 883.2 997 52.7
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 2.4e-254 882.9 791 59.4
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 7.8e-245 851.3 1024 46.5
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 3.0e-244 849.4 742 61.9
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 8.7e-212 741.5 986 46.3
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.3e-170 602.4 795 47.2
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 7.7e-168 595.5 415 74.9
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 7.2e-166 589.0 1147 35.2
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 2.2e-154 550.8 386 73.6
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 4.0e-132 476.9 387 64.9
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 4.7e-117 426.8 632 42.4
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.3e-103 381.3 274 71.5
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 5.1e-79 300.4 297 55.6
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 3.3e-78 297.7 218 69.3
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 8.5e-74 283.1 198 70.2
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 6.9e-68 263.5 222 62.2
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 5.9e-67 260.4 196 68.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 3.8e-66 257.7 217 65.4
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 1.4e-60 239.2 251 51.8
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.2e-58 231.9 335 42.1
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 6.5e-58 230.3 192 59.4
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.4e-55 222.6 194 60.3
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-49 203.0 155 67.1
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 7.8e-27 127.1 119 60.5
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 3.5e-19 101.7 112 54.5
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 4.6e-19 101.3 78 67.9
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 1.0e-18 100.1 76 68.4
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 2.3e-18 99.0 78 65.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 8.6e-18 97.1 65 76.9
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.5e-14 86.3 70 67.1
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 9.8e-14 83.6 82 53.7
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 8.3e-13 80.5 75 57.3
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 7.1e-12 77.4 71 62.0
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 6.0e-11 74.3 73 53.4
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 5.1e-10 71.2 71 54.9
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-06 58.5 45 64.4


User provided reference genes

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