Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.5e-110 402.9 209 100.0
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 9.1e-108 393.7 209 98.6
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 4.3e-41 172.2 206 53.9
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 5.6e-41 171.8 172 55.8
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 7.3e-41 171.4 209 53.1
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 2.1e-40 169.9 167 58.1
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 3.6e-40 169.1 173 54.9
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 8.1e-40 167.9 165 55.8
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 8.1e-40 167.9 167 57.5
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.4e-39 167.2 168 56.0
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 4.0e-39 165.6 171 53.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 6.9e-39 164.9 165 55.8
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 3.4e-38 162.5 206 47.6
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 5.8e-38 161.8 172 52.9
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 7.6e-38 161.4 175 53.1
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 1.7e-37 160.2 196 47.4
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 4.9e-37 158.7 165 51.5
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 4.9e-37 158.7 162 55.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 6.4e-37 158.3 176 52.3
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 8.4e-37 157.9 168 54.2
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.1e-36 157.5 190 50.5
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.4e-36 157.1 170 52.9
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.4e-36 156.4 209 45.9
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 7.1e-36 154.8 143 55.9
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 7.1e-36 154.8 168 50.6
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 7.1e-36 154.8 166 53.0
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 9.3e-36 154.5 165 52.1
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 9.3e-36 154.5 167 53.3
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.2e-35 154.1 161 51.6
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 1.2e-35 154.1 151 51.7
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 4.6e-35 152.1 176 51.1
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 4.6e-35 152.1 176 48.9
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 7.8e-35 151.4 170 50.0
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 1.0e-34 151.0 193 49.7
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 1.3e-34 150.6 92 76.1
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.7e-34 150.2 172 47.7
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.0e-34 149.4 165 49.1
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 3.0e-34 149.4 174 51.7
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.0e-34 149.4 170 52.4
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 5.1e-34 148.7 208 47.6
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 6.6e-34 148.3 180 50.0
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.1e-33 147.5 168 52.4
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.5e-33 147.1 202 46.0
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.5e-33 147.1 205 43.4
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.9e-33 146.7 170 52.4
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-33 146.4 189 48.7
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.5e-33 146.4 189 48.7
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.5e-33 146.4 191 49.2
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 3.3e-33 146.0 152 52.0
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 3.3e-33 146.0 177 50.8
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 4.3e-33 145.6 166 48.8
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.6e-33 145.2 174 48.9
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 5.6e-33 145.2 215 42.8
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 5.6e-33 145.2 174 50.0
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 7.3e-33 144.8 180 48.9
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.3e-32 144.1 178 48.3
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 1.6e-32 143.7 215 43.3
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 2.1e-32 143.3 220 44.1
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 2.1e-32 143.3 211 46.0
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 2.8e-32 142.9 170 47.1
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 3.6e-32 142.5 191 49.2
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 8.1e-32 141.4 92 72.8
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 1.1e-31 141.0 171 48.5
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-31 140.6 171 49.1
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 1.8e-31 140.2 217 45.2
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 1.8e-31 140.2 171 48.0
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 1.8e-31 140.2 171 48.5
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.4e-31 139.8 189 45.0
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.4e-31 139.8 188 46.3
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 3.1e-31 139.4 174 47.1
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 9.0e-31 137.9 209 45.0
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.0e-30 136.7 170 48.2
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.6e-30 136.3 222 41.4
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 4.5e-30 135.6 171 48.0
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 4.5e-30 135.6 171 48.0
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 4.5e-30 135.6 164 48.2
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 8.4e-29 131.3 152 48.7
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.9e-28 130.2 232 39.2
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 5.4e-28 128.6 193 44.0
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.7e-27 126.3 175 44.0
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 3.5e-27 125.9 184 44.0
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 1.8e-26 123.6 193 44.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 2.3e-26 123.2 179 46.4
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 2.3e-26 123.2 179 46.4
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 2.3e-26 123.2 179 46.4
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 5.1e-26 122.1 179 46.4
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 6.7e-26 121.7 218 38.5
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-25 120.9 190 44.2
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.5e-25 120.6 180 46.1
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-25 119.0 179 41.9
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 4.3e-25 119.0 179 41.9
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 4.3e-25 119.0 196 43.9
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 5.6e-25 118.6 94 60.6
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 5.6e-25 118.6 230 40.0
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 7.4e-25 118.2 90 56.7
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.3e-24 117.5 179 41.3
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.3e-24 117.5 243 38.3
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 2.8e-24 116.3 89 61.8
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 3.7e-24 115.9 93 61.3
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-24 115.9 93 61.3
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 3.7e-24 115.9 93 61.3
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 4.8e-24 115.5 91 61.5
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 4.8e-24 115.5 91 61.5
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 6.2e-24 115.2 193 40.9
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.8e-23 113.6 176 40.9
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.8e-23 113.6 176 40.9
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.5e-22 110.5 87 57.5
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 5.8e-22 108.6 139 48.2
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 5.8e-22 108.6 87 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 1.6e-19 100.5 91 51.6
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.1e-19 100.1 80 55.0
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 4.6e-19 99.0 87 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 6.0e-19 98.6 91 50.5
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 1.3e-18 97.4 170 42.4
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.3e-16 90.9 62 62.9
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 3.7e-16 89.4 156 35.9
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 2.6e-14 83.2 67 70.1
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 5.0e-13 79.0 58 67.2
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 5.0e-13 79.0 58 67.2
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.5e-12 76.6 205 30.7
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 2.5e-12 76.6 205 30.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 9.3e-12 74.7 138 38.4
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 7.9e-11 71.6 110 39.1
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 6.3e-08 62.0 53 49.1
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 2.4e-07 60.1 109 33.9
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 3.1e-07 59.7 107 31.8
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 3.1e-07 59.7 166 28.9
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 9.0e-07 58.2 37 56.8
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.5e-06 57.4 34 67.6
Glyma.09G185300 Glycine max HOM05D005829 ORTHO05D007246 2.0e-06 57.0 113 31.0


User provided reference genes

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