Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.1e-122 443.4 238 100.0
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.1e-96 355.1 262 79.4
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 3.6e-84 315.5 273 67.8
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 6.7e-83 311.2 274 66.8
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 6.7e-83 311.2 273 67.0
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 6.7e-83 311.2 273 67.0
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 8.8e-83 310.8 274 66.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.2e-82 310.5 274 66.4
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.0e-82 309.7 275 66.2
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 5.7e-82 308.1 273 66.7
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 7.5e-82 307.8 275 65.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 7.5e-82 307.8 275 65.8
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 9.7e-82 307.4 273 66.3
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 4.8e-81 305.1 272 66.2
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 4.8e-81 305.1 273 65.9
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 1.1e-80 303.9 274 66.1
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.4e-80 302.8 274 66.1
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 4.1e-80 302.0 275 65.1
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.1e-80 302.0 272 65.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 5.3e-80 301.6 273 65.6
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.3e-80 301.6 273 64.8
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.3e-80 301.6 273 65.6
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 7.0e-80 301.2 273 65.2
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.2e-79 300.4 272 64.0
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.6e-79 300.1 271 64.9
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.7e-79 299.3 275 64.0
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.7e-79 299.3 273 64.8
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 4.5e-79 298.5 275 66.2
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 7.7e-79 297.7 294 61.2
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.0e-78 297.4 274 65.7
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.0e-78 297.4 274 64.2
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.0e-78 297.4 273 65.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 1.0e-78 297.4 272 64.3
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.3e-78 297.0 272 64.7
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.3e-78 297.0 274 63.9
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.3e-78 297.0 274 63.9
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.7e-78 296.6 273 63.7
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.7e-78 296.6 273 63.7
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-78 296.6 273 63.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.7e-78 296.6 273 63.4
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 2.2e-78 296.2 274 63.1
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.9e-78 295.8 268 64.9
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.9e-78 295.8 269 64.7
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 2.9e-78 295.8 269 65.1
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.0e-78 295.0 269 65.1
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 6.5e-78 294.7 269 65.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.5e-78 294.7 269 65.1
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 6.5e-78 294.7 269 64.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 6.5e-78 294.7 275 63.6
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 6.5e-78 294.7 272 64.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 8.5e-78 294.3 272 64.7
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.1e-77 293.9 279 62.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-77 293.9 308 58.8
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-77 293.5 273 64.1
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.5e-77 293.5 272 64.0
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.9e-77 293.1 273 64.1
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.5e-77 292.7 270 64.4
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.2e-77 292.0 273 63.7
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 5.5e-77 291.6 269 64.3
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.2e-77 291.2 269 64.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.2e-77 291.2 269 64.3
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 7.2e-77 291.2 269 63.9
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 9.4e-77 290.8 277 61.7
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 9.4e-77 290.8 264 65.5
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.6e-76 290.0 277 61.7
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-76 290.0 280 61.4
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.1e-76 289.7 281 61.2
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.1e-76 289.7 281 61.2
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 2.1e-76 289.7 276 61.2
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 2.7e-76 289.3 279 61.3
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.7e-76 289.3 270 63.7
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.6e-76 288.9 271 63.8
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 3.6e-76 288.9 211 77.7
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 4.7e-76 288.5 277 61.4
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.7e-76 288.5 276 61.6
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 4.7e-76 288.5 276 63.0
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 6.1e-76 288.1 278 61.2
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 6.1e-76 288.1 281 60.9
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 6.1e-76 288.1 278 61.2
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 6.1e-76 288.1 276 61.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 6.1e-76 288.1 276 61.2
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 8.0e-76 287.7 279 60.9
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.0e-75 287.3 281 61.2
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.4e-75 287.0 280 60.7
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.8e-75 286.6 267 63.7
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 2.3e-75 286.2 272 63.2
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.3e-75 286.2 279 60.9
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 4.0e-75 285.4 280 60.0
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 4.0e-75 285.4 261 64.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 6.8e-75 284.6 280 60.4
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.2e-74 283.9 268 61.9
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 1.5e-74 283.5 279 59.9
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.0e-74 283.1 256 65.2
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 4.4e-74 282.0 278 60.1
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.7e-73 280.0 273 62.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 8.3e-73 277.7 282 58.2
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.4e-72 276.2 244 68.0
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 3.1e-72 275.8 258 64.3
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 4.1e-72 275.4 311 55.6
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 4.1e-72 275.4 256 63.7
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 1.6e-71 273.5 254 63.8
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 7.7e-71 271.2 251 64.9
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-70 269.6 315 54.6
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 2.3e-70 269.6 269 59.5
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.9e-70 269.2 315 54.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 5.0e-70 268.5 245 65.7
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 2.5e-69 266.2 255 62.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 2.5e-69 266.2 260 61.9
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-67 260.0 281 58.0
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.0e-67 259.2 260 62.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 3.0e-67 259.2 271 58.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.2e-66 257.3 257 59.9
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 3.4e-66 255.8 258 62.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 9.8e-66 254.2 275 57.8
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 9.8e-66 254.2 258 58.9
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 1.7e-65 253.4 244 62.7
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.1e-64 249.2 269 57.6
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 9.2e-64 247.7 273 55.3
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.8e-60 236.1 258 57.0
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 9.8e-58 227.6 257 53.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.4e-51 207.2 370 41.6
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 2.1e-47 193.4 197 59.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.2e-44 184.1 130 73.1
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 8.1e-44 181.4 267 46.8
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 8.1e-44 181.4 125 75.2
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 8.9e-43 177.9 273 46.2
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 9.9e-42 174.5 256 41.8
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.1e-40 169.1 160 60.6
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-35 153.7 94 81.9
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.7e-33 147.1 249 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 2.5e-29 133.3 245 42.0
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.0e-26 123.6 91 76.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 3.8e-25 119.4 150 54.7
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 1.8e-14 84.0 206 34.5
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.0e-11 71.6 66 59.1
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.9e-09 66.6 180 30.6
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.5e-08 63.5 146 32.9
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 3.9e-06 56.2 50 62.0


User provided reference genes

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