Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 8.4e-179 630.2 305 100.0
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.1e-165 586.6 376 79.5
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 7.0e-117 424.5 376 58.2
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 1.4e-112 410.2 379 57.0
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.2e-111 407.1 372 57.3
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 4.4e-111 405.2 383 55.4
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.7e-110 403.3 383 54.6
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.7e-110 403.3 377 55.4
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 3.7e-110 402.1 358 57.5
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 8.3e-110 401.0 377 55.4
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.1e-109 400.6 378 55.0
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.1e-109 398.7 378 55.3
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.2e-108 397.1 379 55.7
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.7e-108 396.0 377 54.9
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 3.5e-108 395.6 377 53.8
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 5.9e-108 394.8 387 54.3
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 7.8e-108 394.4 385 55.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.0e-107 394.0 380 55.5
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.7e-107 393.3 378 53.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.3e-107 392.9 378 54.8
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 3.0e-107 392.5 376 55.6
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 5.0e-107 391.7 333 59.5
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 8.6e-107 391.0 380 56.1
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 8.6e-107 391.0 378 54.2
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 8.6e-107 391.0 375 53.1
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 8.6e-107 391.0 377 54.1
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.5e-106 390.2 377 54.6
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.9e-106 389.8 376 54.5
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.5e-106 389.4 376 54.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.3e-106 389.0 378 55.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 3.3e-106 389.0 407 51.1
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 4.3e-106 388.7 378 55.8
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 7.3e-106 387.9 376 55.1
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 2.8e-105 386.0 378 53.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.8e-105 386.0 379 54.9
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.6e-105 385.6 400 52.0
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.2e-105 384.8 356 55.1
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 8.0e-105 384.4 378 54.0
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 8.0e-105 384.4 318 60.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 1.0e-104 384.0 311 61.7
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.8e-104 383.3 277 65.3
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.3e-104 382.9 378 52.9
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.3e-104 382.9 317 59.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 3.1e-104 382.5 328 58.2
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.1e-104 382.5 378 52.6
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 4.0e-104 382.1 377 54.4
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 4.0e-104 382.1 364 53.6
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 5.2e-104 381.7 332 58.1
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.9e-104 380.9 380 53.4
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.0e-103 379.8 308 61.4
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 3.4e-103 379.0 318 59.7
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 3.4e-103 379.0 388 52.3
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 7.5e-103 377.9 379 51.7
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 7.5e-103 377.9 321 57.9
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.7e-102 376.7 306 60.5
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 2.2e-102 376.3 383 52.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.9e-102 375.9 381 52.2
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 4.9e-102 375.2 357 54.9
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 4.9e-102 375.2 381 51.7
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 6.4e-102 374.8 381 52.0
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.4e-101 373.6 309 59.2
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 2.4e-101 372.9 403 50.6
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.2e-101 372.5 387 51.4
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 4.1e-101 372.1 390 51.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 4.1e-101 372.1 372 53.0
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 5.4e-101 371.7 323 57.3
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 7.0e-101 371.3 323 58.8
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-100 370.5 380 52.6
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.2e-100 370.5 389 51.7
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.6e-100 370.2 360 53.6
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 2.7e-100 369.4 387 51.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.7e-100 369.4 389 52.4
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 6.0e-100 368.2 368 51.9
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-99 367.5 357 54.3
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-99 367.5 380 52.4
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.3e-99 367.1 372 49.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-99 367.1 380 52.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 2.3e-99 366.3 321 56.7
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-99 366.3 305 58.7
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-99 366.3 305 58.7
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 2.3e-99 366.3 305 58.7
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.0e-99 365.9 390 52.1
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 3.0e-99 365.9 360 54.4
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 3.9e-99 365.5 399 49.6
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.9e-99 365.5 378 50.8
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.9e-99 365.5 400 51.0
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 5.0e-99 365.2 295 59.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.0e-99 365.2 390 52.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.0e-99 365.2 301 59.8
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 6.6e-99 364.8 374 50.3
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 8.6e-99 364.4 380 50.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.5e-98 362.8 396 51.3
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.3e-98 362.1 361 52.6
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 5.6e-98 361.7 378 50.3
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.6e-98 361.7 390 51.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 5.6e-98 361.7 322 55.6
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 7.3e-98 361.3 305 58.4
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 9.5e-98 360.9 375 50.9
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 9.5e-98 360.9 375 50.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 9.5e-98 360.9 380 49.7
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 9.5e-98 360.9 304 58.6
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.6e-97 360.1 372 50.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.1e-97 359.8 302 58.3
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.1e-97 359.8 287 61.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.1e-97 359.8 298 57.0
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.1e-97 359.8 379 50.1
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-97 359.4 352 52.0
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 4.7e-97 358.6 331 55.3
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.0e-95 353.2 298 57.7
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-95 353.2 376 50.8
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 4.4e-95 352.1 380 50.8
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.7e-94 349.0 300 57.3
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 8.3e-94 347.8 329 54.1
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.9e-91 339.0 295 55.9
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.1e-91 338.6 327 54.7
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.5e-90 337.0 298 55.4
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.2e-89 334.0 316 53.8
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.6e-89 333.6 384 49.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.8e-88 328.2 385 49.1
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.5e-87 327.0 348 52.0
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.9e-86 322.8 342 52.6
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 2.9e-86 322.8 293 54.3
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.9e-86 322.8 305 51.8
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 4.9e-86 322.0 349 49.9
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.4e-85 319.7 350 51.4
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.2e-85 319.3 373 47.5
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.6e-84 317.0 330 50.0
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 2.1e-84 316.6 299 50.8
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.9e-82 310.1 330 49.1
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 6.9e-80 301.6 264 57.6
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.2e-79 300.8 313 48.6
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-76 290.4 257 55.6
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.6e-76 290.4 257 55.6
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.8e-76 288.1 326 49.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.9e-74 283.5 301 47.2
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 3.6e-73 279.3 329 47.4
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-72 277.3 353 45.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.4e-72 277.3 262 56.9
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.8e-72 276.9 241 58.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 5.8e-71 271.9 304 49.7
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 3.3e-66 256.1 197 64.5
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.9e-62 243.0 224 54.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.0e-59 233.0 297 42.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.3e-57 227.6 361 36.0
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.6e-57 227.3 189 61.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 4.8e-57 225.7 299 41.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 4.5e-55 219.2 294 39.8
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.8e-49 199.1 224 48.2
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.1e-48 198.0 103 85.4
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 7.6e-47 191.8 191 55.0
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.4e-45 187.6 123 71.5
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.1e-43 179.1 109 75.2
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 8.7e-43 178.3 196 48.5
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.3e-42 176.4 196 48.0
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.9e-37 160.6 334 32.9
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 4.6e-36 156.0 306 36.6
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 4.4e-34 149.4 119 61.3
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 3.1e-32 143.3 183 47.0
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 3.0e-27 126.7 66 86.4
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.1e-26 124.8 75 73.3
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.7e-25 120.9 74 68.9
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 9.1e-24 115.2 57 91.2
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 9.1e-24 115.2 57 91.2
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-23 114.0 57 89.5
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-22 111.7 94 60.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.7e-22 110.9 55 90.9
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.7e-22 110.9 64 79.7
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 6.5e-22 109.0 94 59.6
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.9e-21 107.5 94 58.5
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 2.0e-18 97.4 299 25.8
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 6.3e-17 92.4 96 53.1
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.1e-16 91.7 51 82.4
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 5.9e-15 85.9 64 64.1
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 7.2e-13 79.0 43 74.4
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 2.7e-12 77.0 41 85.4
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 8.0e-12 75.5 47 74.5
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 3.0e-11 73.6 57 66.7
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-10 71.6 96 42.7
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.0e-10 70.9 46 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 3.4e-10 70.1 179 31.8
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 4.8e-09 66.2 44 63.6
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 4.8e-09 66.2 44 63.6
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 7.0e-08 62.4 33 87.9


User provided reference genes

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