Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013118 Vanilla planifolia HOM05D003465 ORTHO05D004034 1.3e-57 226.1 110 100.0
Lj4g0026387 Lotus japonicus HOM05D003465 ORTHO05D004034 3.0e-17 92.0 125 42.4
TPR.G25433 Trifolium pratense HOM05D003465 ORTHO05D004034 1.5e-16 89.7 124 41.9
Ca_18690_v3 Cicer arietinum L. HOM05D003465 ORTHO05D004034 2.5e-16 89.0 128 41.4
VMungo0251G1706 Vigna mungo HOM05D003465 ORTHO05D004034 3.3e-16 88.6 125 41.6
PGR142G0601 Punica granatum HOM05D003465 ORTHO05D004034 5.6e-16 87.8 139 37.4
Glyma.07G212900 Glycine max HOM05D003465 ORTHO05D004034 9.6e-16 87.0 55 72.7
Gohir.A13G040700 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.1e-15 85.9 134 34.3
Glyma.02G131900 Glycine max HOM05D003465 ORTHO05D004034 2.8e-15 85.5 129 38.8
Gohir.A12G024000 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.8e-15 85.5 135 34.8
Phvul.003G292000 Phaseolus vulgaris HOM05D003465 ORTHO05D004034 2.8e-15 85.5 126 41.3
Carub.0003s1911 Capsella rubella HOM05D003465 ORTHO05D004034 3.6e-15 85.1 117 44.4
Cpa.g.sc62.7 Carica papaya HOM05D003465 ORTHO05D004034 3.6e-15 85.1 135 37.0
arahy.Tifrunner.gnm1.ann1.5RT47R Arachis hypogaea HOM05D003465 ORTHO05D004034 4.7e-15 84.7 128 36.7
arahy.Tifrunner.gnm1.ann1.PPSU1J Arachis hypogaea HOM05D003465 ORTHO05D004034 4.7e-15 84.7 128 36.7
Nn1g04851 Nelumbo nucifera HOM05D003465 ORTHO05D004034 8.1e-15 84.0 140 39.3
Gohir.D12G024600 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.4e-14 83.2 135 33.3
Gohir.D13G039450 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.4e-14 83.2 134 34.3
Gorai.008G024900 Gossypium raimondii HOM05D003465 ORTHO05D004034 1.4e-14 83.2 135 33.3
CSS0040219 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 2.4e-14 82.4 133 37.6
Gorai.013G044300 Gossypium raimondii HOM05D003465 ORTHO05D004034 2.4e-14 82.4 134 34.3
Medtr4g086010 Medicago truncatula HOM05D003465 ORTHO05D004034 3.1e-14 82.0 124 37.9
THA.LOC104803455 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 5.2e-14 81.3 110 43.6
Eucgr.I01147 Eucalyptus grandis HOM05D003465 ORTHO05D004034 6.9e-14 80.9 135 35.6
Hma1.2p1_0474F.1_g160420 Hydrangea macrophylla HOM05D003465 ORTHO05D004034 6.9e-14 80.9 137 35.8
Hund06174 Selenicereus undatus HOM05D003465 ORTHO05D004034 6.9e-14 80.9 136 39.0
CiPaw.05G007600 Carya illinoinensis HOM05D003465 ORTHO05D004034 9.0e-14 80.5 126 38.1
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 9.0e-14 80.5 118 40.7
TWI79G0501 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 1.2e-13 80.1 130 36.2
Lalb_Chr16g0384751 Lupinus albus HOM05D003465 ORTHO05D004034 1.5e-13 79.7 128 38.3
Sp3g17360 Schrenkiella parvula HOM05D003465 ORTHO05D004034 2.0e-13 79.3 127 39.4
Dinv15715 Davidia involucrata HOM05D003465 ORTHO05D004034 2.6e-13 79.0 129 35.7
FvH4_2g05930 Fragaria vesca HOM05D003465 ORTHO05D004034 2.6e-13 79.0 128 38.3
FAN15G0414 Fragaria x ananassa HOM05D003465 ORTHO05D004034 2.6e-13 79.0 128 38.3
TAR625G0342 Trochodendron aralioides HOM05D003465 ORTHO05D004034 4.4e-13 78.2 146 35.6
Cfa004534 Carpinus fangiana HOM05D003465 ORTHO05D004034 7.6e-13 77.4 134 38.1
Lalb_Chr05g0219201 Lupinus albus HOM05D003465 ORTHO05D004034 7.6e-13 77.4 129 38.0
Lalb_Chr09g0328341 Lupinus albus HOM05D003465 ORTHO05D004034 7.6e-13 77.4 130 35.4
AT3G19280 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 9.9e-13 77.0 109 42.2
CANSAT25G3338 Cannabis sativa HOM05D003465 ORTHO05D004034 9.9e-13 77.0 130 39.2
CANSAT25G3355 Cannabis sativa HOM05D003465 ORTHO05D004034 9.9e-13 77.0 130 39.2
TWI31G0519 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 9.9e-13 77.0 129 36.4
Cc02_g18830 Coffea canephora HOM05D003465 ORTHO05D004034 1.3e-12 76.6 71 49.3
MD10G1094900 Malus domestica HOM05D003465 ORTHO05D004034 1.3e-12 76.6 126 38.9
FAN20G2338 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.7e-12 76.3 121 38.8
FAN27G0960 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.7e-12 76.3 121 38.8
Psat7g125480 Pisum sativum HOM05D003465 ORTHO05D004034 2.9e-12 75.5 124 36.3
Hund00338 Selenicereus undatus HOM05D003465 ORTHO05D004034 2.9e-12 75.5 127 37.8
TAR381G0440 Trochodendron aralioides HOM05D003465 ORTHO05D004034 2.9e-12 75.5 143 32.2
AL3G32680 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 4.9e-12 74.7 111 37.8
CSS0046899 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 4.9e-12 74.7 128 36.7
Haze_10093 Corylus avellana HOM05D003465 ORTHO05D004034 4.9e-12 74.7 122 37.7
Duzib052G0281 Durio zibethinus HOM05D003465 ORTHO05D004034 4.9e-12 74.7 131 32.1
PGSC0003DMG401006223 Solanum tuberosum HOM05D003465 ORTHO05D004034 6.4e-12 74.3 55 61.8
Zm00001eb176710 Zea mays HOM05D003465 ORTHO05D004034 6.4e-12 74.3 61 59.0
Thecc.02G101300 Theobroma cacao HOM05D003465 ORTHO05D004034 8.4e-12 73.9 138 31.2
MBI03_g13465_MAGBIO Magnolia biondii HOM05D003465 ORTHO05D004034 1.4e-11 73.2 57 63.2
MD05G1081600 Malus domestica HOM05D003465 ORTHO05D004034 1.4e-11 73.2 125 36.8
AT1G49710 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 1.9e-11 72.8 134 33.6
Peaxi162Scf00003g02335 Petunia axillaris HOM05D003465 ORTHO05D004034 1.9e-11 72.8 55 60.0
DCAR_022021 Daucus carota HOM05D003465 ORTHO05D004034 3.2e-11 72.0 140 30.7
Sp1g36600 Schrenkiella parvula HOM05D003465 ORTHO05D004034 3.2e-11 72.0 122 37.7
AUR62011449 Chenopodium quinoa HOM05D003465 ORTHO05D004034 4.2e-11 71.6 136 33.1
Lj9C358T1 Lonicera japonica HOM05D003465 ORTHO05D004034 5.4e-11 71.2 114 37.7
RcHm_v2.0_Chr6g0257471 Rosa chinensis HOM05D003465 ORTHO05D004034 5.4e-11 71.2 122 36.1
Sc18g0004110 Simmondsia chinensis HOM05D003465 ORTHO05D004034 5.4e-11 71.2 140 33.6
Sopen10g021410 Solanum pennellii HOM05D003465 ORTHO05D004034 5.4e-11 71.2 55 60.0
vmacro19503 Vaccinium macrocarpon HOM05D003465 ORTHO05D004034 5.4e-11 71.2 55 58.2
Thhalv10011402m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 7.1e-11 70.9 124 34.7
HanXRQChr04g0128181 Helianthus annuus HOM05D003465 ORTHO05D004034 7.1e-11 70.9 137 32.8
Lj5A209T84 Lonicera japonica HOM05D003465 ORTHO05D004034 7.1e-11 70.9 142 33.1
Nitab4.5_0002543g0080 Nicotiana tabacum HOM05D003465 ORTHO05D004034 7.1e-11 70.9 55 56.4
Nitab4.5_0003503g0030 Nicotiana tabacum HOM05D003465 ORTHO05D004034 7.1e-11 70.9 55 56.4
Os08g0472600 Oryza sativa ssp. japonica HOM05D003465 ORTHO05D004034 7.1e-11 70.9 69 53.6
Actinidia27958 Actinidia chinensis HOM05D003465 ORTHO05D004034 9.3e-11 70.5 61 54.1
Potri.009G101500 Populus trichocarpa HOM05D003465 ORTHO05D004034 1.2e-10 70.1 125 37.6
AL1G57150 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 1.6e-10 69.7 132 34.8
Dinv42161 Davidia involucrata HOM05D003465 ORTHO05D004034 1.6e-10 69.7 135 30.4
EL10Ac9g21840 Beta vulgaris HOM05D003465 ORTHO05D004034 2.1e-10 69.3 133 33.1
Carub.0001s3892 Capsella rubella HOM05D003465 ORTHO05D004034 2.1e-10 69.3 119 36.1
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 2.1e-10 69.3 55 54.5
CAN.G1707.1 Capsicum annuum HOM05D003465 ORTHO05D004034 2.7e-10 68.9 55 54.5
AUR62016610 Chenopodium quinoa HOM05D003465 ORTHO05D004034 2.7e-10 68.9 55 56.4
Rhsim05G0084700 Rhododendron simsii HOM05D003465 ORTHO05D004034 2.7e-10 68.9 55 52.7
Aa31LG10G4340 Aethionema arabicum HOM05D003465 ORTHO05D004034 3.5e-10 68.6 119 37.8
BcaC07g37019 Brassica carinata HOM05D003465 ORTHO05D004034 3.5e-10 68.6 112 35.7
C08p03870 Brassica napus HOM05D003465 ORTHO05D004034 3.5e-10 68.6 112 35.7
BolC8t47184H Brassica oleracea HOM05D003465 ORTHO05D004034 3.5e-10 68.6 112 35.7
Solyc10g050230.3 Solanum lycopersicum HOM05D003465 ORTHO05D004034 3.5e-10 68.6 55 58.2
unitig_744.g24234 Utricularia gibba HOM05D003465 ORTHO05D004034 3.5e-10 68.6 129 36.4
C05p45870 Brassica napus HOM05D003465 ORTHO05D004034 7.8e-10 67.4 116 37.9
Solyc01g108110.4 Solanum lycopersicum HOM05D003465 ORTHO05D004034 7.8e-10 67.4 138 33.3
Aqoxy6G01316 Aquilegia oxysepala HOM05D003465 ORTHO05D004034 1.0e-09 67.0 49 61.2
Lsat_1_v5_gn_5_112540 Lactuca sativa HOM05D003465 ORTHO05D004034 1.0e-09 67.0 55 56.4
BcaB04g17304 Brassica carinata HOM05D003465 ORTHO05D004034 1.3e-09 66.6 116 35.3
A05p30320 Brassica napus HOM05D003465 ORTHO05D004034 1.3e-09 66.6 115 38.3
BraA05t21870Z Brassica rapa HOM05D003465 ORTHO05D004034 1.3e-09 66.6 115 38.3
BraA08t32401Z Brassica rapa HOM05D003465 ORTHO05D004034 1.3e-09 66.6 112 34.8
QL11p035314 Quercus lobata HOM05D003465 ORTHO05D004034 1.3e-09 66.6 60 50.0
A08p03730 Brassica napus HOM05D003465 ORTHO05D004034 2.3e-09 65.9 112 34.8
Sabra09G0077300 Salix brachista HOM05D003465 ORTHO05D004034 2.3e-09 65.9 86 40.7
BcaC05g28503 Brassica carinata HOM05D003465 ORTHO05D004034 3.0e-09 65.5 115 38.3
BolC5t33305H Brassica oleracea HOM05D003465 ORTHO05D004034 3.0e-09 65.5 115 38.3
CAN.G1041.31 Capsicum annuum HOM05D003465 ORTHO05D004034 3.0e-09 65.5 135 34.1
Oeu010591.2 Olea europaea HOM05D003465 ORTHO05D004034 3.0e-09 65.5 61 50.8
MELO3C019516.2 Cucumis melo HOM05D003465 ORTHO05D004034 3.9e-09 65.1 125 34.4
Nn5g30308 Nelumbo nucifera HOM05D003465 ORTHO05D004034 5.1e-09 64.7 133 33.8
ClCG02G005960 Citrullus lanatus HOM05D003465 ORTHO05D004034 6.6e-09 64.3 121 33.1
A06p03720 Brassica napus HOM05D003465 ORTHO05D004034 8.7e-09 63.9 126 32.5
Sopen01g050340 Solanum pennellii HOM05D003465 ORTHO05D004034 8.7e-09 63.9 51 54.9
PGSC0003DMG400025789 Solanum tuberosum HOM05D003465 ORTHO05D004034 8.7e-09 63.9 51 54.9
BcaB07g33651 Brassica carinata HOM05D003465 ORTHO05D004034 1.5e-08 63.2 123 33.3
BraA06t23577Z Brassica rapa HOM05D003465 ORTHO05D004034 1.5e-08 63.2 122 32.0
ClCG05G010040 Citrullus lanatus HOM05D003465 ORTHO05D004034 1.5e-08 63.2 125 34.4
Ciclev10028212m.g Citrus clementina HOM05D003465 ORTHO05D004034 1.5e-08 63.2 55 49.1
GSVIVG01031736001 Vitis vinifera HOM05D003465 ORTHO05D004034 1.5e-08 63.2 123 32.5
BcaC08g43160 Brassica carinata HOM05D003465 ORTHO05D004034 2.5e-08 62.4 121 32.2
C06p04480 Brassica napus HOM05D003465 ORTHO05D004034 2.5e-08 62.4 121 32.2
BolC6t35578H Brassica oleracea HOM05D003465 ORTHO05D004034 2.5e-08 62.4 121 32.2
Nitab4.5_0007480g0040 Nicotiana tabacum HOM05D003465 ORTHO05D004034 2.5e-08 62.4 55 56.4
Sed0008599 Sechium edule HOM05D003465 ORTHO05D004034 3.3e-08 62.0 133 32.3
Sed0016548 Sechium edule HOM05D003465 ORTHO05D004034 3.3e-08 62.0 126 33.3
Lsat_1_v5_gn_7_86701 Lactuca sativa HOM05D003465 ORTHO05D004034 4.3e-08 61.6 51 56.9
CsaV3_7G008560 Cucumis sativus L. HOM05D003465 ORTHO05D004034 5.6e-08 61.2 129 31.8
HanXRQChr16g0497621 Helianthus annuus HOM05D003465 ORTHO05D004034 5.6e-08 61.2 65 49.2
SGA_v2.0_scaffold90G27641 Striga asiatica HOM05D003465 ORTHO05D004034 9.6e-08 60.5 137 35.0
Oeu025579.1 Olea europaea HOM05D003465 ORTHO05D004034 1.3e-07 60.1 63 49.2
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 1.6e-07 59.7 58 50.0
ATR0009G025 Amborella trichopoda HOM05D003465 ORTHO05D004034 2.8e-07 58.9 124 33.1
SHI05356 Sapria himalayana HOM05D003465 ORTHO05D004034 2.8e-07 58.9 145 31.0
CsaV3_3G018500 Cucumis sativus L. HOM05D003465 ORTHO05D004034 3.6e-07 58.5 125 32.8
CDE08G1667 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 4.8e-07 58.2 63 49.2
Gorai.002G008200 Gossypium raimondii HOM05D003465 ORTHO05D004034 6.2e-07 57.8 137 29.2
Gohir.D01G007200 Gossypium hirsutum HOM05D003465 ORTHO05D004034 8.1e-07 57.4 137 29.2
CDE06G1279 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 1.1e-06 57.0 113 36.3
PSO675G3714 Papaver somniferum HOM05D003465 ORTHO05D004034 1.8e-06 56.2 55 52.7
SEGI_41455 Sequoiadendron giganteum HOM05D003465 ORTHO05D004034 6.9e-06 54.3 53 47.2


User provided reference genes

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