Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 0.0e+00 1140.2 566 100.0
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 5.0e-76 289.7 302 50.3
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 6.8e-73 279.3 307 48.2
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.7e-71 274.6 300 50.0
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 1.8e-70 271.2 317 44.8
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 5.4e-70 269.6 312 48.1
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 9.1e-70 268.9 294 49.3
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.6e-69 268.1 286 48.6
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 3.5e-69 266.9 304 49.0
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.9e-69 266.2 292 48.3
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.9e-69 266.2 301 47.5
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.7e-68 264.6 301 46.8
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.7e-68 264.6 292 48.3
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.7e-68 264.6 292 48.3
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 2.9e-68 263.8 322 45.7
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 2.9e-68 263.8 323 45.8
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.9e-67 261.2 316 46.8
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 2.5e-67 260.8 317 47.0
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 3.2e-67 260.4 277 49.5
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 4.2e-67 260.0 334 44.6
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 4.2e-67 260.0 299 47.8
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 4.2e-67 260.0 294 48.3
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 7.2e-67 259.2 304 47.4
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.6e-66 258.1 290 47.9
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 4.7e-66 256.5 304 46.4
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 4.7e-66 256.5 295 47.5
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.1e-66 256.1 275 50.2
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 8.0e-66 255.8 317 44.8
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.0e-65 255.4 313 46.0
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 2.3e-65 254.2 329 43.8
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 2.3e-65 254.2 297 46.5
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 2.3e-65 254.2 313 46.0
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 2.3e-65 254.2 312 44.2
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 5.2e-65 253.1 315 46.0
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 5.2e-65 253.1 297 46.5
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 5.2e-65 253.1 306 46.4
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 6.8e-65 252.7 290 43.4
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.2e-64 251.9 299 46.2
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 1.5e-64 251.5 305 43.6
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 2.0e-64 251.1 300 45.3
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 3.4e-64 250.4 333 42.6
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 3.4e-64 250.4 296 46.3
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.4e-64 250.0 330 43.0
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 4.4e-64 250.0 303 46.5
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 5.7e-64 249.6 290 43.1
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 9.8e-64 248.8 306 41.8
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 2.2e-63 247.7 303 46.2
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.8e-63 247.3 309 42.1
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 2.8e-63 247.3 285 47.4
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 2.8e-63 247.3 321 44.5
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 4.9e-63 246.5 341 41.9
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 6.3e-63 246.1 346 39.9
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 1.1e-62 245.4 338 41.7
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.1e-62 245.4 307 46.3
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.1e-62 243.8 339 41.6
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.1e-62 243.8 320 45.0
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.1e-62 243.4 276 46.4
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.1e-62 243.4 276 46.4
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 4.1e-62 243.4 301 44.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 2.0e-61 241.1 317 42.3
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.5e-61 240.4 276 46.4
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.5e-61 240.4 270 45.9
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 4.5e-61 240.0 299 44.1
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.0e-60 238.8 322 42.5
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.0e-60 238.8 317 43.5
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 1.3e-60 238.4 305 43.6
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 2.9e-60 237.3 331 40.5
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 3.8e-60 236.9 306 42.5
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 3.8e-60 236.9 360 37.2
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 5.0e-60 236.5 326 40.2
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 6.6e-60 236.1 328 39.6
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.5e-59 235.0 308 42.5
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 2.5e-59 234.2 325 41.8
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.3e-59 232.6 301 42.9
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.2e-58 231.9 297 43.8
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 8.0e-58 229.2 308 42.9
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.0e-57 228.8 303 42.9
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.8e-57 228.0 308 40.9
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 3.0e-57 227.3 358 36.9
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 5.7e-56 223.0 316 39.9
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 5.7e-56 223.0 307 40.7
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 7.5e-56 222.6 265 47.5
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 9.8e-56 222.2 316 39.9
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 1.7e-55 221.5 238 49.6
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 3.7e-55 220.3 316 39.6
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 6.4e-55 219.5 304 41.1
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 8.3e-55 219.2 301 40.9
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.8e-54 218.0 307 41.4
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 7.0e-54 216.1 259 47.9
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 7.0e-54 216.1 338 39.1
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.6e-53 214.9 347 38.3
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 2.0e-53 214.5 324 39.2
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.7e-53 214.2 324 38.9
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 4.6e-53 213.4 324 39.5
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 7.8e-53 212.6 324 38.6
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 7.8e-53 212.6 324 38.6
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 7.8e-53 212.6 324 38.6
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 7.8e-53 212.6 315 39.0
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.7e-52 211.5 344 37.2
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.7e-52 211.5 324 38.9
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 2.3e-52 211.1 330 38.5
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 3.3e-51 207.2 335 39.7
Os03g0245500 Oryza sativa ssp. japonica HOM05D011128 ORTHO05D013158 3.3e-51 207.2 273 48.0
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.2e-50 205.3 335 39.1
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 4.0e-49 200.3 351 36.2
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.5e-48 198.4 317 36.6
HPP92_022644 Vanilla planifolia HOM05D011128 ORTHO05D013158 1.7e-47 194.9 227 48.0
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 5.4e-46 189.9 358 35.2
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 6.0e-45 186.4 294 38.4
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.0e-44 183.3 311 37.3
PSO541G0387 Papaver somniferum HOM05D011128 ORTHO05D013158 6.6e-44 183.0 166 54.8
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.5e-43 181.8 304 35.5
PSO675G4000 Papaver somniferum HOM05D011128 ORTHO05D013158 1.9e-43 181.4 166 54.8
MBI09_g04508_MAGBIO Magnolia biondii HOM05D011128 ORTHO05D013158 5.6e-43 179.9 212 47.2
Zm00001eb026630 Zea mays HOM05D011128 ORTHO05D013158 2.8e-42 177.6 265 41.9
Os10g0155100 Oryza sativa ssp. japonica HOM05D011128 ORTHO05D013158 6.2e-42 176.4 180 53.9
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 4.4e-40 170.2 319 36.4
GSVIVG01009921001 Vitis vinifera HOM05D011128 ORTHO05D013158 5.8e-40 169.9 197 47.2
Aqoxy4G01009 Aquilegia oxysepala HOM05D011128 ORTHO05D013158 3.7e-39 167.2 213 46.0
Aqoxy4G01007 Aquilegia oxysepala HOM05D011128 ORTHO05D013158 6.4e-39 166.4 235 44.3
TAR381G1610 Trochodendron aralioides HOM05D011128 ORTHO05D013158 3.2e-38 164.1 241 41.5
ATR0810G051 Amborella trichopoda HOM05D011128 ORTHO05D013158 6.0e-37 159.8 146 54.1
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.1e-33 149.1 373 28.7
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.2e-33 146.7 224 40.2
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.5e-32 145.2 307 31.9
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 1.7e-31 141.7 249 34.9
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.4e-30 138.7 298 32.9
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 1.9e-30 138.3 130 48.5
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.1e-30 136.3 293 31.1
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 6.0e-29 133.3 327 31.8
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.9e-28 130.6 275 33.5
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 1.9e-27 128.3 132 51.5
QL02p011742 Quercus lobata HOM05D011128 ORTHO05D013158 4.3e-27 127.1 154 47.4
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 5.6e-27 126.7 173 45.1
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.2e-26 125.6 145 46.9
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.4e-25 122.1 149 40.3
Hma1.2p1_0638F.1_g193930 Hydrangea macrophylla HOM05D011128 ORTHO05D013158 1.4e-25 122.1 127 50.4
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.4e-25 122.1 275 33.5
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.2e-22 110.9 122 43.4
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.6e-19 100.1 206 34.0
Zm00001eb319800 Zea mays HOM05D011128 ORTHO05D013158 1.3e-18 99.0 121 41.3
Eucgr.F01669 Eucalyptus grandis HOM05D011128 ORTHO05D013158 4.0e-17 94.0 170 34.7
Os09g0535400 Oryza sativa ssp. japonica HOM05D011128 ORTHO05D013158 7.6e-16 89.7 139 39.6
PGR083G0453 Punica granatum HOM05D011128 ORTHO05D013158 3.2e-14 84.3 147 34.0
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.1e-09 69.3 82 45.1
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 7.6e-08 63.2 40 65.0
Sopen07g030790 Solanum pennellii HOM05D000859 ORTHO05D000668 3.8e-07 60.8 120 34.2
Nitab4.5_0009409g0010 Nicotiana tabacum HOM05D000859 ORTHO05D000668 6.4e-07 60.1 76 42.1
Solyc07g062560.3 Solanum lycopersicum HOM05D000859 ORTHO05D000668 6.4e-07 60.1 120 34.2
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 2.4e-06 58.2 121 32.2
PGR031G0988 Punica granatum HOM05D000859 ORTHO05D000668 3.2e-06 57.8 76 38.2
Lj4A882T16 Lonicera japonica HOM05D000859 ORTHO05D000668 5.5e-06 57.0 117 33.3
Lj4A884T24 Lonicera japonica HOM05D000859 ORTHO05D000668 5.5e-06 57.0 117 33.3
PGSC0003DMG400012389 Solanum tuberosum HOM05D000859 ORTHO05D000668 5.5e-06 57.0 76 39.5


User provided reference genes

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