Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 5.9e-59 230.7 122 100.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.7e-27 125.6 108 62.0
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.0e-26 123.6 105 60.0
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 2.3e-26 122.5 108 59.3
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.0e-26 122.1 108 58.3
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 3.0e-26 122.1 109 61.5
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 5.1e-26 121.3 109 60.6
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 1.1e-25 120.2 108 57.4
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 1.5e-25 119.8 108 58.3
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.3e-25 118.2 111 54.1
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 4.3e-25 118.2 108 58.3
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 4.3e-25 118.2 108 58.3
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 5.6e-25 117.9 106 59.4
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 7.3e-25 117.5 108 58.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.3e-24 116.7 108 57.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.3e-24 116.7 108 54.6
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.6e-24 116.3 108 59.3
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.1e-24 115.9 108 59.3
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.1e-24 115.9 90 65.6
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 3.6e-24 115.2 106 56.6
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.8e-24 114.8 97 57.7
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 4.8e-24 114.8 108 53.7
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 4.8e-24 114.8 108 60.2
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 6.2e-24 114.4 108 57.4
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 6.2e-24 114.4 106 56.6
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.2e-24 114.4 106 56.6
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 8.1e-24 114.0 108 57.4
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 1.1e-23 113.6 106 55.7
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.4e-23 113.2 106 55.7
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.4e-23 113.2 105 56.2
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.4e-23 113.2 108 56.5
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.8e-23 112.8 105 54.3
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 2.4e-23 112.5 106 55.7
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.4e-23 112.5 106 55.7
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.4e-23 112.5 90 64.4
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 3.1e-23 112.1 106 56.6
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 4.0e-23 111.7 106 57.5
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 4.0e-23 111.7 105 54.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 4.0e-23 111.7 108 58.3
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 4.0e-23 111.7 105 54.3
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 5.3e-23 111.3 111 54.1
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 5.3e-23 111.3 111 54.1
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 5.3e-23 111.3 106 54.7
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 6.9e-23 110.9 105 54.3
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 6.9e-23 110.9 105 54.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 6.9e-23 110.9 105 54.3
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 9.0e-23 110.5 104 54.8
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 9.0e-23 110.5 108 53.7
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 9.0e-23 110.5 108 52.8
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.0e-23 110.5 106 55.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.0e-23 110.5 105 53.3
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.2e-22 110.2 105 54.3
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.2e-22 110.2 106 56.6
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.2e-22 110.2 106 57.5
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.5e-22 109.8 109 54.1
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.5e-22 109.8 104 54.8
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 2.0e-22 109.4 106 56.6
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.0e-22 109.4 103 56.3
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.0e-22 109.4 107 55.1
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.6e-22 109.0 106 53.8
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 5.8e-22 107.8 108 54.6
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 7.6e-22 107.5 108 53.7
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.6e-22 107.5 108 55.6
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 7.6e-22 107.5 108 52.8
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 7.6e-22 107.5 94 58.5
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 9.9e-22 107.1 106 55.7
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.3e-21 106.7 108 56.5
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.7e-21 106.3 108 55.6
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.7e-21 106.3 105 55.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.7e-21 106.3 106 53.8
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.7e-21 106.3 98 55.1
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.2e-21 105.9 108 56.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.2e-21 105.9 106 52.8
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 2.2e-21 105.9 85 62.4
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 2.9e-21 105.5 108 50.9
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 2.9e-21 105.5 104 51.9
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.8e-21 105.1 106 55.7
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 4.9e-21 104.8 109 53.2
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 4.9e-21 104.8 109 54.1
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 4.9e-21 104.8 106 55.7
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 4.9e-21 104.8 103 52.4
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 4.9e-21 104.8 103 52.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 4.9e-21 104.8 106 54.7
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 6.4e-21 104.4 113 54.0
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 6.4e-21 104.4 108 50.0
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 8.4e-21 104.0 106 54.7
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 8.4e-21 104.0 109 54.1
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 8.4e-21 104.0 109 54.1
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 8.4e-21 104.0 109 54.1
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 8.4e-21 104.0 108 50.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 8.4e-21 104.0 90 58.9
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.1e-20 103.6 106 55.7
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-20 103.6 106 55.7
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.1e-20 103.6 106 55.7
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.1e-20 103.6 95 55.8
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.1e-20 103.6 108 49.1
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.4e-20 102.4 106 54.7
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.4e-20 102.4 108 50.0
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 2.4e-20 102.4 129 48.8
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 2.4e-20 102.4 103 50.5
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 5.4e-20 101.3 106 53.8
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 5.4e-20 101.3 98 56.1
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 7.1e-20 100.9 99 50.5
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 7.1e-20 100.9 106 49.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.6e-19 99.8 96 56.2
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.6e-19 99.8 94 56.4
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.6e-19 99.8 103 51.5
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 1.6e-19 99.8 109 56.0
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 2.1e-19 99.4 88 58.0
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.3e-18 96.7 108 48.1
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.7e-18 96.3 103 50.5
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.7e-18 96.3 103 50.5
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 3.9e-18 95.1 101 54.5
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.9e-18 95.1 95 52.6
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 8.7e-18 94.0 98 50.0
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 8.7e-18 94.0 126 43.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.1e-17 93.6 107 52.3
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.1e-17 93.6 119 44.5
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 2.5e-17 92.4 108 51.9
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.3e-17 91.7 97 51.5
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 4.3e-17 91.7 108 45.4
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 7.3e-17 90.9 108 51.9
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 7.3e-17 90.9 89 53.9
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.3e-17 90.9 98 55.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 9.6e-17 90.5 108 50.9
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.6e-16 89.7 105 50.5
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 2.1e-16 89.4 76 60.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.8e-16 89.0 94 50.0
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 8.1e-16 87.4 92 51.1
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.4e-15 86.7 94 48.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 4.0e-15 85.1 83 59.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.5e-14 81.6 74 58.1
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.3e-13 80.1 88 53.4
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.7e-13 79.7 108 45.4
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 3.2e-12 75.5 83 50.6
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.2e-11 73.6 74 58.1
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 2.1e-11 72.8 76 56.6
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 6.7e-10 67.8 86 44.2
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.1e-09 67.0 59 62.7
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 3.3e-09 65.5 79 50.6
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 6.2e-08 61.2 60 53.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.1e-08 60.8 48 66.7
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 8.1e-08 60.8 74 44.6
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.1e-07 60.5 66 50.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 5.3e-07 58.2 72 50.0


User provided reference genes

Program Settings