Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.4e-270 935.6 463 100.0
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.5e-182 641.3 324 97.5
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.8e-87 327.4 263 58.2
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 4.5e-83 312.8 276 56.2
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 5.5e-81 305.8 271 54.6
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 2.7e-80 303.5 276 54.7
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.0e-79 301.6 286 53.8
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 2.3e-79 300.4 269 55.8
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 4.0e-79 299.7 286 52.4
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 5.2e-79 299.3 286 51.7
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 5.2e-79 299.3 287 54.0
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.5e-78 297.7 265 54.7
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.0e-78 297.4 279 53.0
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 2.6e-78 297.0 269 53.2
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 5.7e-78 295.8 293 51.5
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 7.5e-78 295.4 292 51.0
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.3e-77 294.7 268 53.7
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.3e-77 294.7 289 49.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.7e-77 294.3 268 53.7
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.8e-77 292.7 271 52.8
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.8e-77 292.7 268 53.7
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 6.3e-77 292.4 293 50.5
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 1.1e-76 291.6 294 51.4
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.8e-76 290.8 281 52.0
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.8e-76 290.8 295 50.2
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.4e-76 290.4 278 51.4
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 2.4e-76 290.4 292 52.1
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 3.1e-76 290.0 273 52.4
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 3.1e-76 290.0 292 52.1
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 4.1e-76 289.7 290 50.3
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.1e-76 289.7 269 50.9
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.1e-76 289.7 284 50.0
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 9.1e-76 288.5 271 52.4
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.2e-75 288.1 284 51.1
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.6e-75 287.7 266 52.6
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.7e-75 287.0 290 50.0
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.5e-75 286.6 264 53.4
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 4.5e-75 286.2 268 52.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 5.9e-75 285.8 285 51.9
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 5.9e-75 285.8 283 49.8
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.0e-74 285.0 263 54.0
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 3.8e-74 283.1 271 53.9
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 6.5e-74 282.3 282 53.5
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 6.5e-74 282.3 266 52.3
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.9e-73 280.8 261 54.0
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.5e-73 280.4 264 53.0
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.5e-73 280.4 264 53.0
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.5e-73 280.4 285 50.9
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 3.2e-73 280.0 264 51.5
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 3.2e-73 280.0 264 51.5
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 3.2e-73 280.0 285 50.9
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 3.2e-73 280.0 283 48.8
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 4.2e-73 279.6 285 50.9
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 5.5e-73 279.3 291 49.1
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 5.5e-73 279.3 280 49.3
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 5.5e-73 279.3 317 45.7
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 5.5e-73 279.3 268 52.2
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 7.2e-73 278.9 277 50.2
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 9.4e-73 278.5 264 51.5
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 9.4e-73 278.5 277 50.5
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.1e-72 277.3 254 52.0
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.0e-71 275.0 262 51.1
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.4e-71 274.6 260 52.7
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.4e-71 274.6 260 52.7
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.4e-71 274.6 267 50.2
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.8e-71 274.2 261 51.7
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.8e-71 274.2 261 51.7
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 2.3e-71 273.9 281 49.5
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 6.8e-71 272.3 289 46.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 6.8e-71 272.3 268 51.5
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 8.8e-71 271.9 268 51.5
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 8.8e-71 271.9 288 46.9
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.5e-70 271.2 281 49.1
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 2.0e-70 270.8 288 46.2
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 5.7e-70 269.2 291 46.4
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.3e-69 268.1 268 49.3
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 2.8e-69 266.9 248 53.2
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 2.8e-69 266.9 280 47.9
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 2.4e-68 263.8 269 49.4
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.4e-68 263.8 271 48.3
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 5.4e-68 262.7 274 50.7
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 7.0e-68 262.3 291 47.8
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 2.0e-67 260.8 279 45.2
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 5.9e-67 259.2 265 48.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 5.9e-67 259.2 289 45.3
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 1.0e-66 258.5 293 44.0
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 6.5e-66 255.8 278 46.8
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.5e-65 254.6 275 48.4
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.2e-65 253.1 280 50.4
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.2e-64 251.5 343 38.8
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.6e-64 251.1 302 43.7
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 1.4e-63 248.1 263 47.5
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.8e-63 247.7 253 48.6
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.3e-63 247.3 278 46.4
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 6.8e-63 245.7 286 44.8
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 6.8e-63 245.7 292 46.2
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.5e-62 244.6 264 51.1
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.0e-62 244.2 279 42.3
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 4.4e-62 243.0 286 45.1
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.7e-61 241.1 250 51.6
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 1.4e-60 238.0 216 55.1
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.8e-60 237.7 276 42.4
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 9.2e-60 235.3 251 47.0
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 5.9e-59 232.6 244 48.8
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.0e-58 231.9 216 55.1
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 2.8e-56 223.8 293 40.3
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 3.0e-55 220.3 309 41.4
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 8.9e-55 218.8 255 47.1
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 2.4e-52 210.7 273 42.9
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.2e-48 198.4 209 49.8
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 1.6e-48 198.0 192 53.6
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.4e-46 189.9 219 44.7
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.3e-45 188.3 219 44.7
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.7e-45 188.0 219 44.3
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.7e-45 188.0 219 44.3
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 9.2e-44 182.2 123 66.7
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.6e-43 179.9 196 49.5
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.5e-41 174.1 279 35.8
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 4.3e-41 173.3 445 27.6
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 3.1e-39 167.2 197 44.7
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.0e-39 166.8 288 35.1
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 6.8e-39 166.0 160 52.5
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.0e-38 164.5 229 41.0
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.9e-37 160.6 249 34.5
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 7.8e-35 152.5 351 31.6
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.5e-33 147.5 142 51.4
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 7.6e-30 136.0 175 43.4
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.0e-26 125.6 155 45.8
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 1.3e-26 125.2 383 27.7
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 1.1e-25 122.1 155 43.2
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.1e-24 117.9 320 27.2
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 2.0e-22 111.3 88 62.5
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.2e-21 107.8 131 44.3
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 6.0e-19 99.8 167 38.3
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 5.1e-18 96.7 120 44.2
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.9e-17 94.7 196 33.2
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.3e-17 94.0 67 58.2
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 1.6e-16 91.7 141 43.3
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.1e-15 89.0 53 66.0
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.6e-14 84.3 51 66.7
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.9e-12 78.2 50 62.0
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-10 71.6 91 42.9
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 6.9e-07 59.7 37 56.8
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 2.0e-06 58.2 38 63.2
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 2.0e-06 58.2 38 63.2


User provided reference genes

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