Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 4.6e-138 494.6 253 100.0
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 5.0e-28 129.0 65 100.0
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 1.6e-26 124.0 256 37.5
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 9.2e-22 108.2 248 35.9
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 9.2e-22 108.2 254 35.0
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 2.7e-21 106.7 249 34.1
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 3.5e-21 106.3 250 35.2
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.0e-21 105.5 256 32.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.8e-21 105.1 256 32.4
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 7.8e-21 105.1 269 34.9
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 2.3e-20 103.6 258 34.1
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 3.0e-20 103.2 261 32.2
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 6.6e-20 102.1 249 32.9
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 8.6e-20 101.7 261 34.1
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.5e-19 100.9 259 33.2
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-19 100.5 249 32.5
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-19 100.5 249 31.7
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.5e-19 100.1 256 33.6
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 3.3e-19 99.8 254 35.0
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.3e-19 99.8 259 34.0
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 5.6e-19 99.0 241 33.2
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.3e-19 98.6 255 32.9
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 7.3e-19 98.6 260 34.6
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 9.5e-19 98.2 249 32.9
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.5e-19 98.2 249 32.9
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.5e-19 98.2 249 32.9
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.5e-19 98.2 254 31.9
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.6e-18 97.4 249 31.3
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 2.1e-18 97.1 258 32.9
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.8e-18 96.7 268 31.7
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.8e-18 96.7 259 30.5
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 2.8e-18 96.7 255 32.9
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 3.6e-18 96.3 241 33.2
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 3.6e-18 96.3 254 33.1
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.7e-18 95.9 255 29.8
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 4.7e-18 95.9 254 33.5
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 6.2e-18 95.5 256 33.6
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 8.1e-18 95.1 275 31.6
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.1e-17 94.7 273 30.8
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.1e-17 94.7 260 30.8
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.4e-17 94.4 247 33.2
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 4.0e-17 92.8 254 31.9
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.0e-17 92.8 276 30.4
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 8.9e-17 91.7 253 30.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 2.0e-16 90.5 236 34.3
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.4e-16 89.7 249 31.3
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 4.4e-16 89.4 260 29.6
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 5.8e-16 89.0 252 31.3
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 5.8e-16 89.0 259 30.1
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 7.6e-16 88.6 259 30.5
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 9.9e-16 88.2 255 31.0
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 1.3e-15 87.8 258 30.2
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.3e-15 87.8 260 30.8
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 1.7e-15 87.4 245 31.4
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 2.9e-15 86.7 251 30.3
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 2.9e-15 86.7 263 31.2
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 3.8e-15 86.3 261 32.2
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 4.9e-15 85.9 237 29.5
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 4.9e-15 85.9 264 30.7
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 6.4e-15 85.5 244 29.9
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 8.4e-15 85.1 217 34.6
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 8.4e-15 85.1 254 32.3
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 1.1e-14 84.7 257 30.0
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.4e-14 84.3 249 31.7
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.4e-14 84.3 263 28.9
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.9e-14 84.0 245 32.2
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.9e-14 84.0 255 31.8
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.2e-14 83.2 259 30.5
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 3.2e-14 83.2 259 30.5
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 3.2e-14 83.2 257 29.2
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 3.2e-14 83.2 248 29.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 3.2e-14 83.2 258 29.1
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 7.1e-14 82.0 211 31.8
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.7e-13 80.1 245 32.2
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.7e-13 80.1 268 27.2
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 3.5e-13 79.7 250 31.2
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 3.5e-13 79.7 250 26.4
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 6.0e-13 79.0 257 30.4
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 6.0e-13 79.0 262 27.9
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 1.0e-12 78.2 248 31.9
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 1.0e-12 78.2 261 29.1
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.7e-12 77.4 212 29.7
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 2.3e-12 77.0 245 29.4
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.3e-12 77.0 255 28.6
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 2.3e-12 77.0 247 27.5
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 3.0e-12 76.6 243 30.5
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 3.9e-12 76.3 249 27.3
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 6.6e-12 75.5 242 29.3
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 8.7e-12 75.1 240 30.4
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 8.7e-12 75.1 260 29.2
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.1e-11 74.7 244 29.5
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.1e-11 74.7 257 29.6
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-11 74.3 257 30.0
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.5e-11 73.6 247 30.4
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.5e-11 73.6 247 30.4
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 2.5e-11 73.6 254 28.7
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 3.3e-11 73.2 248 29.0
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 3.3e-11 73.2 263 27.4
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.3e-11 73.2 255 31.4
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 5.6e-11 72.4 247 30.4
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 9.6e-11 71.6 256 31.2
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.6e-11 71.6 255 28.2
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.6e-10 70.9 242 28.5
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.6e-10 70.9 255 27.8
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 2.1e-10 70.5 252 29.8
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.8e-10 70.1 242 29.3
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 3.6e-10 69.7 255 27.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 4.7e-10 69.3 244 26.6
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 4.7e-10 69.3 253 26.5
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 4.7e-10 69.3 68 52.9
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.1e-09 68.2 63 49.2
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.4e-09 67.8 249 27.7
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.4e-09 67.8 269 27.1
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 1.4e-09 67.8 269 27.1
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.4e-09 67.8 247 30.0
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.8e-09 67.4 179 29.6
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 4.0e-09 66.2 251 27.9
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 4.0e-09 66.2 250 28.0
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 4.0e-09 66.2 255 29.4
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 5.2e-09 65.9 246 26.8
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 5.2e-09 65.9 68 48.5
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.9e-09 65.5 65 47.7
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 1.2e-08 64.7 245 29.4
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.5e-08 64.3 247 25.9
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 1.5e-08 64.3 240 28.8
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.5e-08 64.3 68 50.0
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.4e-08 63.2 168 28.6
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.4e-08 63.2 246 27.6
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.8e-08 62.4 68 48.5
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 5.8e-08 62.4 140 33.6
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 7.6e-08 62.0 65 47.7
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.6e-08 62.0 68 39.7
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 9.9e-08 61.6 187 28.9
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 9.9e-08 61.6 236 28.0
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 9.9e-08 61.6 248 26.2
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 9.9e-08 61.6 253 27.7
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.3e-07 61.2 63 49.2
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.7e-07 60.8 179 29.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.9e-07 60.1 254 27.6
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 2.9e-07 60.1 77 39.0
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.1e-06 58.2 168 27.4
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.1e-06 58.2 168 27.4
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 5.4e-06 55.8 155 33.5


User provided reference genes

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