Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 1.9e-68 262.3 125 100.0
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 78.6
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 9.4e-52 206.8 126 77.0
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 1.2e-51 206.5 126 79.4
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 3.6e-51 204.9 126 76.2
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.6e-51 204.9 126 76.2
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 4.7e-51 204.5 126 79.4
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 4.7e-51 204.5 126 77.8
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 6.1e-51 204.1 126 77.0
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 6.1e-51 204.1 127 78.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 6.1e-51 204.1 127 78.7
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 8.0e-51 203.8 125 77.6
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.0e-50 203.4 126 76.2
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 1.4e-50 203.0 126 77.8
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 1.8e-50 202.6 126 77.8
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.8e-50 202.6 126 76.2
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 4.0e-50 201.4 125 76.8
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 4.0e-50 201.4 125 76.8
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 4.0e-50 201.4 126 77.8
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.2e-50 201.1 126 77.0
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 6.7e-50 200.7 125 76.8
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 6.7e-50 200.7 126 77.0
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 8.8e-50 200.3 126 76.2
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 8.8e-50 200.3 125 76.8
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 8.8e-50 200.3 126 77.0
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 8.8e-50 200.3 126 76.2
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 1.2e-49 199.9 125 76.8
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 2.0e-49 199.1 126 77.0
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 2.0e-49 199.1 126 75.4
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 2.0e-49 199.1 125 74.4
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 2.6e-49 198.7 126 77.0
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 2.6e-49 198.7 126 77.8
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.6e-49 198.7 126 77.0
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 77.0
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 77.0
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 77.0
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 76.2
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 77.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 74.6
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 73.8
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 3.3e-49 198.4 126 73.8
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 5.7e-49 197.6 126 75.4
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 9.7e-49 196.8 124 75.8
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 9.7e-49 196.8 126 75.4
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.3e-48 196.4 126 73.8
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 1.7e-48 196.1 123 76.4
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.7e-48 196.1 126 74.6
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.7e-48 196.1 126 73.8
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 2.2e-48 195.7 126 74.6
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.8e-48 195.3 126 75.4
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 2.8e-48 195.3 126 74.6
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 3.7e-48 194.9 140 70.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 3.7e-48 194.9 124 75.8
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.7e-48 194.9 126 75.4
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 3.7e-48 194.9 126 75.4
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 3.7e-48 194.9 126 74.6
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 6.3e-48 194.1 126 75.4
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 8.2e-48 193.7 125 72.0
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 8.2e-48 193.7 126 74.6
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 1.1e-47 193.4 126 74.6
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-47 193.4 126 74.6
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.1e-47 193.4 126 73.8
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 1.4e-47 193.0 126 75.4
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.8e-47 192.6 125 72.8
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 2.4e-47 192.2 126 74.6
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 2.4e-47 192.2 126 74.6
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.4e-47 192.2 126 75.4
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.1e-47 191.8 127 74.8
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.1e-47 191.8 126 75.4
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 73.8
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 4.1e-47 191.4 126 74.6
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 74.6
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 74.6
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.1e-47 191.4 125 73.6
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 73.0
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 4.1e-47 191.4 126 73.0
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 5.3e-47 191.0 126 73.8
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 7.0e-47 190.7 126 73.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 7.0e-47 190.7 125 73.6
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.2e-46 189.9 126 73.0
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 1.6e-46 189.5 126 73.0
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 1.6e-46 189.5 126 73.0
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-46 189.5 126 73.0
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 1.6e-46 189.5 126 73.0
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.6e-46 189.5 126 73.0
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.6e-46 189.5 126 74.6
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 2.0e-46 189.1 126 71.4
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 3.5e-46 188.3 126 73.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 3.5e-46 188.3 126 73.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 3.5e-46 188.3 112 76.8
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.5e-46 188.3 126 73.0
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 5.9e-46 187.6 126 73.0
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.0e-45 186.8 126 73.0
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.3e-45 186.4 127 74.0
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.7e-45 186.0 124 72.6
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.7e-45 186.0 126 73.0
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 2.9e-45 185.3 126 71.4
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 2.9e-45 185.3 126 72.2
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 5.0e-45 184.5 126 72.2
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 5.0e-45 184.5 126 72.2
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.1e-44 183.3 126 72.2
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 1.9e-44 182.6 127 72.4
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 2.5e-44 182.2 126 71.4
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 4.2e-44 181.4 126 71.4
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 4.2e-44 181.4 126 68.3
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.1e-43 179.1 126 69.8
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 3.6e-43 178.3 126 70.6
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 6.8e-42 174.1 94 80.9
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 8.8e-42 173.7 93 79.6
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.5e-41 172.9 94 81.9
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 3.7e-40 168.3 105 77.1
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.8e-40 167.9 105 76.2
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.8e-40 167.9 112 70.5
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 1.4e-39 166.4 105 75.2
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 2.4e-39 165.6 105 75.2
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 3.1e-39 165.2 115 69.6
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 4.1e-39 164.9 105 75.2
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.1e-39 164.9 105 74.3
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 9.1e-39 163.7 104 76.9
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 9.1e-39 163.7 114 70.2
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 5.9e-38 161.0 125 64.8
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 2.9e-37 158.7 105 73.3
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 3.8e-37 158.3 121 61.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 3.3e-36 155.2 112 69.6
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.3e-36 155.2 105 71.4
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 7.2e-36 154.1 105 73.3
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.6e-35 151.8 112 67.9
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 6.8e-34 147.5 105 70.5
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 4.4e-33 144.8 101 62.4
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.7e-32 141.7 139 55.4
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 4.1e-31 138.3 73 80.8
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 5.9e-30 134.4 139 53.2
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.9e-30 134.4 126 57.9
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.3e-29 133.3 122 57.4
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.3e-29 133.3 121 54.5
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 2.5e-28 129.0 126 57.9
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.9e-24 115.5 79 65.8
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 1.1e-23 113.6 107 51.4
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 4.1e-23 111.7 66 74.2
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 5.4e-23 111.3 79 69.6
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.0e-21 107.1 75 72.0
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 8.6e-21 104.0 67 70.1
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 7.3e-20 100.9 126 47.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.1e-18 95.5 86 58.1
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 8.9e-18 94.0 88 58.0
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.9e-18 94.0 86 55.8
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 4.4e-17 91.7 61 68.9
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 2.9e-16 89.0 76 56.6
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 2.4e-15 85.9 95 47.4
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.6e-14 83.2 94 48.9
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 6.0e-14 81.3 75 56.0
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 2.5e-12 75.9 63 61.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 9.5e-12 73.9 43 74.4
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.8e-10 69.7 69 58.0


User provided reference genes

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