Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.0e-262 909.4 434 100.0
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 6.2e-119 431.8 435 51.3
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 1.1e-118 431.0 432 50.9
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.4e-117 426.0 467 47.5
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 9.3e-115 417.9 460 47.8
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 1.3e-113 414.1 431 49.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.8e-113 413.7 453 47.9
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 3.0e-113 412.9 452 49.6
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 3.3e-112 409.5 451 49.9
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 4.8e-111 405.6 466 48.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 6.3e-111 405.2 453 49.4
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.1e-110 404.4 454 48.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.4e-110 403.3 451 48.8
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 4.1e-110 402.5 453 49.9
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.2e-109 401.0 448 49.8
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.0e-109 400.2 449 47.7
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 5.9e-109 398.7 452 46.0
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.2e-108 396.7 429 47.8
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 2.2e-108 396.7 465 47.3
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 2.2e-108 396.7 459 47.5
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.2e-108 396.7 451 47.2
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 2.2e-108 396.7 451 47.2
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-108 396.0 465 47.1
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 5.0e-108 395.6 444 47.1
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 5.0e-108 395.6 443 46.5
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 6.5e-108 395.2 463 46.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.4e-107 394.0 444 46.6
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-107 393.7 471 46.3
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.5e-107 393.3 468 46.4
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 7.2e-107 391.7 429 48.3
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 9.4e-107 391.3 451 46.3
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 1.6e-106 390.6 488 45.3
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.6e-106 389.4 455 46.6
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 4.6e-106 389.0 430 48.1
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.0e-105 386.3 433 45.0
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 3.9e-105 386.0 423 47.0
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 5.1e-105 385.6 449 45.2
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.7e-105 385.2 457 47.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 6.7e-105 385.2 453 45.7
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 2.0e-104 383.6 431 48.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 3.3e-104 382.9 451 47.5
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 7.4e-104 381.7 451 46.1
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.4e-104 381.7 457 47.0
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.3e-103 380.9 433 45.5
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 1.3e-103 380.9 452 46.0
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 1.3e-103 380.9 427 48.0
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 2.2e-103 380.2 427 47.1
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 2.8e-103 379.8 441 47.6
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.8e-103 379.8 450 46.9
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.8e-103 379.8 463 45.6
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 3.7e-103 379.4 416 51.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 8.2e-103 378.3 457 46.0
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.8e-102 377.1 427 44.3
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.4e-102 376.7 431 47.3
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 3.1e-102 376.3 435 46.0
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.5e-101 374.0 451 47.9
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.5e-101 374.0 451 47.9
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.4e-101 372.9 429 47.1
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 4.5e-101 372.5 454 45.8
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.9e-100 369.8 423 46.6
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 8.5e-100 368.2 426 46.9
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 8.5e-100 368.2 446 45.5
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.9e-99 367.1 390 51.8
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.2e-99 366.3 479 43.2
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 3.2e-99 366.3 432 47.0
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 4.2e-99 365.9 348 53.4
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 9.4e-99 364.8 439 44.9
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.2e-98 364.4 425 46.1
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 1.8e-97 360.5 391 48.3
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.3e-97 360.1 428 44.6
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.3e-97 360.1 431 44.8
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.1e-96 357.8 421 45.6
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.5e-96 357.5 425 46.4
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.0e-96 357.1 430 45.3
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.3e-96 356.3 470 43.2
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 7.4e-96 355.1 363 51.5
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.3e-95 354.4 437 43.2
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 7.0e-94 348.6 350 49.7
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.2e-93 347.8 343 51.6
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.0e-92 344.7 433 41.8
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 4.2e-91 339.3 444 43.9
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 7.2e-91 338.6 346 50.9
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 1.6e-90 337.4 342 50.6
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 8.0e-90 335.1 437 43.7
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.0e-89 334.7 436 43.6
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 7.4e-88 328.6 440 42.0
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 9.7e-88 328.2 436 41.5
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.8e-87 326.6 434 42.6
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 6.3e-87 325.5 324 50.6
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 3.1e-86 323.2 440 41.8
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 7.0e-86 322.0 437 43.9
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 2.6e-85 320.1 344 48.0
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 4.5e-85 319.3 365 47.1
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 1.0e-84 318.2 438 43.4
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 4.0e-81 306.2 436 39.4
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 6.3e-79 298.9 398 42.0
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.8e-78 297.4 443 42.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.5e-76 288.5 546 35.3
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.5e-75 287.7 442 42.8
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.5e-75 287.0 527 35.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 3.4e-72 276.6 296 49.7
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.4e-72 276.2 431 39.0
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.7e-71 273.1 341 43.4
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 4.1e-70 269.6 302 49.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.1e-67 261.5 318 46.9
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 8.0e-66 255.4 402 37.3
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.0e-65 255.0 430 37.0
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.4e-65 254.6 325 43.4
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.2e-63 247.3 492 34.1
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-63 246.9 423 36.4
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.7e-63 246.5 400 37.0
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 5.0e-60 236.1 280 44.3
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.2e-58 231.5 246 50.0
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 3.1e-57 226.9 550 29.1
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.2e-53 214.9 234 47.4
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 8.6e-52 208.8 147 64.6
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 2.2e-47 194.1 472 30.9
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.3e-44 184.9 377 34.2
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 3.3e-43 180.3 328 36.6
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-42 175.6 139 56.1
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.9e-38 164.5 188 45.2
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 9.2e-38 162.2 174 47.7
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.6e-37 161.4 232 34.9
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 7.8e-37 159.1 236 35.2
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 3.2e-30 137.1 196 39.3
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 4.8e-26 123.2 98 57.1
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.4e-22 111.7 233 29.2
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.3e-20 104.4 156 37.8
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 2.4e-17 94.4 246 32.1
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 6.4e-15 86.3 96 49.0
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.4e-14 84.3 54 72.2
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.9e-11 74.7 75 50.7
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.2e-07 61.2 52 48.1


User provided reference genes

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