Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.1e-175 617.8 292 100.0
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 2.1e-139 499.2 287 79.4
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 3.9e-117 425.2 286 66.8
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.1e-114 415.2 287 66.2
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 6.9e-114 414.5 288 66.0
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.0e-112 410.6 288 65.3
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.7e-112 409.8 286 65.0
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.9e-111 406.4 287 65.5
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 1.9e-111 406.4 284 63.4
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.9e-111 406.4 281 66.2
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 2.5e-111 406.0 287 65.2
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 3.2e-111 405.6 287 64.5
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.1e-110 402.9 283 64.7
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 2.1e-110 402.9 262 66.4
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.7e-110 402.5 286 65.0
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 4.7e-110 401.7 256 68.8
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 4.7e-110 401.7 283 65.7
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 7.9e-110 401.0 282 63.5
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 7.9e-110 401.0 287 62.4
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.4e-109 400.2 288 63.5
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 1.4e-109 400.2 283 64.0
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 1.8e-109 399.8 276 63.4
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.8e-109 399.8 288 63.5
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.8e-109 399.8 288 63.5
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 3.0e-109 399.1 262 65.6
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 3.0e-109 399.1 262 65.6
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 3.0e-109 399.1 287 63.4
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-109 399.1 286 63.3
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 3.0e-109 399.1 283 64.7
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 3.0e-109 399.1 270 66.7
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 3.9e-109 398.7 262 66.0
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.9e-109 398.7 286 62.6
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 3.9e-109 398.7 287 62.4
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 5.2e-109 398.3 281 63.3
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 1.1e-108 397.1 261 66.7
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 1.5e-108 396.7 283 64.0
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.5e-108 396.7 286 61.9
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.0e-108 396.4 262 65.6
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.0e-108 396.4 262 65.6
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 2.0e-108 396.4 287 63.4
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 2.6e-108 396.0 289 63.0
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.6e-108 396.0 281 63.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 3.3e-108 395.6 264 67.4
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 3.3e-108 395.6 286 61.2
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 4.4e-108 395.2 264 68.6
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 4.4e-108 395.2 282 62.8
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 4.4e-108 395.2 282 63.1
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 4.4e-108 395.2 286 62.2
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 7.4e-108 394.4 287 63.1
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 9.7e-108 394.0 272 64.7
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 9.7e-108 394.0 267 64.8
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 1.3e-107 393.7 286 61.5
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 1.7e-107 393.3 286 62.2
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.7e-107 393.3 285 63.2
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 1.7e-107 393.3 286 63.3
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 2.2e-107 392.9 282 62.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.2e-107 392.9 283 64.7
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.2e-107 392.9 287 61.3
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 3.7e-107 392.1 282 62.1
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 4.8e-107 391.7 245 69.4
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.3e-107 391.3 286 62.9
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 8.2e-107 391.0 247 68.8
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.1e-106 390.6 284 65.1
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 1.1e-106 390.6 263 68.1
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 1.4e-106 390.2 289 60.9
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-106 390.2 244 69.3
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-106 390.2 244 69.3
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.3e-106 388.3 286 61.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.3e-106 388.3 286 61.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.2e-105 387.1 286 61.5
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 4.5e-105 385.2 288 62.2
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 7.7e-105 384.4 282 62.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 7.7e-105 384.4 266 63.2
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 1.0e-104 384.0 286 59.4
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 1.0e-104 384.0 286 61.5
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.0e-104 384.0 286 61.2
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.3e-104 383.6 287 61.7
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.3e-104 383.6 263 64.3
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.2e-104 382.9 288 60.4
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 2.9e-104 382.5 285 60.0
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 5.0e-104 381.7 287 59.6
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 5.0e-104 381.7 264 62.9
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 5.0e-104 381.7 286 60.8
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.5e-104 381.3 311 59.5
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 8.5e-104 380.9 261 64.8
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 8.5e-104 380.9 282 61.7
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 1.1e-103 380.6 269 61.7
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.1e-103 380.6 282 61.7
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 1.1e-103 380.6 262 64.5
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 1.5e-103 380.2 264 62.9
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.9e-103 379.8 266 62.8
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.9e-103 379.8 276 59.8
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.2e-103 379.0 262 63.7
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 3.2e-103 379.0 266 62.4
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 4.2e-103 378.6 261 64.0
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 5.5e-103 378.3 288 60.8
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 5.5e-103 378.3 286 61.5
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 1.2e-102 377.1 287 61.7
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 8.0e-102 374.4 264 61.0
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 2.8e-99 365.9 270 63.0
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.4e-98 363.6 378 47.9
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.0e-97 359.8 288 58.7
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 2.0e-97 359.8 288 58.7
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.2e-96 356.3 294 58.8
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 5.0e-96 355.1 284 59.2
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 5.0e-96 355.1 373 46.9
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 1.2e-94 350.5 269 60.2
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 6.1e-94 348.2 280 57.1
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 4.8e-91 338.6 281 56.9
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.4e-90 337.0 283 58.3
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 2.7e-89 332.8 293 54.6
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-86 323.6 201 68.7
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-86 323.6 201 68.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.6e-86 323.6 279 54.5
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-85 320.5 201 68.2
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 6.8e-85 318.2 236 61.4
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 1.2e-84 317.4 281 55.5
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 5.7e-84 315.1 285 51.9
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.3e-80 303.9 232 59.9
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 8.6e-80 301.2 273 53.8
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.8e-78 296.2 254 55.5
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.0e-77 294.3 294 49.7
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.2e-75 286.6 208 62.5
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 1.4e-74 283.9 275 50.9
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 4.1e-74 282.3 289 49.8
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 7.0e-74 281.6 234 56.8
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 7.0e-74 281.6 268 50.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.6e-70 270.4 221 55.2
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-66 257.7 174 63.8
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.1e-66 255.8 247 51.8
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 7.0e-66 255.0 244 51.2
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.6e-64 248.4 152 69.7
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.6e-62 243.8 215 55.8
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.1e-61 239.6 183 60.7
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.5e-47 194.1 222 44.1
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 2.2e-43 180.3 112 68.8
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 2.3e-32 143.7 154 45.5
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 9.3e-26 121.7 74 70.3
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.0e-24 118.2 74 67.6
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 4.5e-20 102.8 64 68.8
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.7e-19 100.9 107 43.0
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 8.4e-19 98.6 112 46.4
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 2.1e-17 94.0 76 51.3
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 1.7e-11 74.3 145 33.1
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 3.3e-07 60.1 73 43.8


User provided reference genes

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