Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012714 Vanilla planifolia HOM05D004685 ORTHO05D005412 2.0e-52 208.8 103 100.0
HPP92_012799 Vanilla planifolia HOM05D004685 ORTHO05D005412 2.4e-13 79.0 52 78.8
Glyma.13G346500 Glycine max HOM05D004685 ORTHO05D005412 1.6e-12 76.3 52 73.1
Glyma.15G027700 Glycine max HOM05D004685 ORTHO05D005412 1.6e-12 76.3 52 73.1
Sc13g0007990 Simmondsia chinensis HOM05D004685 ORTHO05D005412 1.6e-12 76.3 52 73.1
ClCG07G015070 Citrullus lanatus HOM05D004685 ORTHO05D005412 2.7e-12 75.5 51 74.5
MELO3C017779.2 Cucumis melo HOM05D004685 ORTHO05D005412 2.7e-12 75.5 51 74.5
CsaV3_4G002620 Cucumis sativus L. HOM05D004685 ORTHO05D005412 2.7e-12 75.5 51 74.5
MBI07_g02901_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 2.7e-12 75.5 51 74.5
PSO017G4600 Papaver somniferum HOM05D004685 ORTHO05D005412 2.7e-12 75.5 51 74.5
CAN.G31.7 Capsicum annuum HOM05D004685 ORTHO05D005412 3.5e-12 75.1 52 71.2
Sabra12G0034200 Salix brachista HOM05D004685 ORTHO05D005412 3.5e-12 75.1 61 63.9
Solyc11g005010.3 Solanum lycopersicum HOM05D004685 ORTHO05D005412 3.5e-12 75.1 52 71.2
Sopen11g001030 Solanum pennellii HOM05D004685 ORTHO05D005412 3.5e-12 75.1 52 71.2
Thecc.04G171300 Theobroma cacao HOM05D004685 ORTHO05D005412 3.5e-12 75.1 52 71.2
CDE04G1604 Ceratophyllum demersum HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
CDE07G1691 Ceratophyllum demersum HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
Dinv05093 Davidia involucrata HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
Manes.11G127300 Manihot esculenta HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
Nn7g37611 Nelumbo nucifera HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
Os09g0515800 Oryza sativa ssp. japonica HOM05D004685 ORTHO05D005412 6.0e-12 74.3 52 71.2
QL10p052572 Quercus lobata HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
Sabra07G0108900 Salix brachista HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
Sed0003070 Sechium edule HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
TWI63G0381 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
TAR362G0066 Trochodendron aralioides HOM05D004685 ORTHO05D005412 6.0e-12 74.3 51 72.5
CiPaw.01G173200 Carya illinoinensis HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 72.5
Dinv44167 Davidia involucrata HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 72.5
ECA240G0670 Erigeron canadensis HOM05D004685 ORTHO05D005412 7.8e-12 73.9 52 71.2
Lj3A151G15 Lonicera japonica HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 72.5
Phvul.005G155500 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 70.6
Prupe.1G201500 Prunus persica HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 70.6
PGR014G0004 Punica granatum HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 70.6
PGR083G2412 Punica granatum HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 70.6
VMungo1080G1803 Vigna mungo HOM05D004685 ORTHO05D005412 7.8e-12 73.9 51 70.6
Actinidia34572 Actinidia chinensis HOM05D004685 ORTHO05D005412 1.3e-11 73.2 51 70.6
Nn1g09723 Nelumbo nucifera HOM05D004685 ORTHO05D005412 1.3e-11 73.2 51 70.6
Zm00001eb191360 Zea mays HOM05D004685 ORTHO05D005412 1.3e-11 73.2 52 69.2
Atru.chr4.1348 Acer truncatum HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
CANSAT54G0526 Cannabis sativa HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
Cfa015223 Carpinus fangiana HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
Ciclev10020095m.g Citrus clementina HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
MBI11_g23943_MAGBIO Magnolia biondii HOM05D004685 ORTHO05D005412 1.7e-11 72.8 52 67.3
PSO675G3484 Papaver somniferum HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 72.5
Peaxi162Scf00126g00812 Petunia axillaris HOM05D004685 ORTHO05D005412 1.7e-11 72.8 52 67.3
Rhsim09G0013500 Rhododendron simsii HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
SGA_v2.0_scaffold25G10992 Striga asiatica HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
vmacro00654 Vaccinium macrocarpon HOM05D004685 ORTHO05D005412 1.7e-11 72.8 51 70.6
Aqoxy2G04150 Aquilegia oxysepala HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 70.6
Ciclev10024547m.g Citrus clementina HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 68.6
Duzib212G0895 Durio zibethinus HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 70.6
Eucgr.A00035 Eucalyptus grandis HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 68.6
Manes.04G048500 Manihot esculenta HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 70.6
Medtr2g099380 Medicago truncatula HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 70.6
Phvul.011G051800 Phaseolus vulgaris HOM05D004685 ORTHO05D005412 2.3e-11 72.4 51 66.7
DCAR_005442 Daucus carota HOM05D004685 ORTHO05D005412 3.0e-11 72.0 51 68.6
Gohir.A02G092700 Gossypium hirsutum HOM05D004685 ORTHO05D005412 3.0e-11 72.0 51 68.6
Gohir.D02G110800 Gossypium hirsutum HOM05D004685 ORTHO05D005412 3.0e-11 72.0 51 68.6
Gorai.005G125700 Gossypium raimondii HOM05D004685 ORTHO05D005412 3.0e-11 72.0 51 68.6
MD04G1046900 Malus domestica HOM05D004685 ORTHO05D005412 3.0e-11 72.0 51 72.5
ATR0743G201 Amborella trichopoda HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 66.7
CSS0040744 Camellia sinensis var. sinensis HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 70.6
Gohir.A10G141300 Gossypium hirsutum HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 68.6
Gohir.D10G125600 Gossypium hirsutum HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 68.6
Gorai.011G138600 Gossypium raimondii HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 68.6
HanXRQChr14g0433711 Helianthus annuus HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 68.6
Potri.007G134200 Populus trichocarpa HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 70.6
GSVIVG01038095001 Vitis vinifera HOM05D004685 ORTHO05D005412 3.9e-11 71.6 51 70.6
arahy.Tifrunner.gnm1.ann1.D04CBC Arachis hypogaea HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 70.6
arahy.Tifrunner.gnm1.ann1.H82CQV Arachis hypogaea HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 66.7
arahy.Tifrunner.gnm1.ann1.YPS1PN Arachis hypogaea HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 70.6
CiPaw.02G103100 Carya illinoinensis HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 68.6
Ca_20808_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 66.7
Glyma.11G125000 Glycine max HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 66.7
Glyma.12G049550 Glycine max HOM05D004685 ORTHO05D005412 5.1e-11 71.2 51 66.7
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 6.6e-11 70.9 51 66.7
Cc03_g11850 Coffea canephora HOM05D004685 ORTHO05D005412 6.6e-11 70.9 51 70.6
Prupe.4G179600 Prunus persica HOM05D004685 ORTHO05D005412 6.6e-11 70.9 51 66.7
RcHm_v2.0_Chr5g0033161 Rosa chinensis HOM05D004685 ORTHO05D005412 6.6e-11 70.9 51 66.7
Hund03187 Selenicereus undatus HOM05D004685 ORTHO05D005412 6.6e-11 70.9 52 67.3
VMungo1127G1426 Vigna mungo HOM05D004685 ORTHO05D005412 6.6e-11 70.9 51 64.7
THA.LOC104815520 Tarenaya hassleriana HOM05D004685 ORTHO05D005412 8.7e-11 70.5 51 66.7
TWI38G2236 Tripterygium wilfordii HOM05D004685 ORTHO05D005412 8.7e-11 70.5 51 70.6
unitig_578.g16717 Utricularia gibba HOM05D004685 ORTHO05D005412 8.7e-11 70.5 51 70.6
Lalb_Chr22g0352021 Lupinus albus HOM05D004685 ORTHO05D005412 1.1e-10 70.1 51 66.7
MSTRG.24569 Avicennia marina HOM05D004685 ORTHO05D005412 1.5e-10 69.7 51 68.6
Ca_01238_v3 Cicer arietinum L. HOM05D004685 ORTHO05D005412 1.5e-10 69.7 51 68.6
vmacro21333 Vaccinium macrocarpon HOM05D004685 ORTHO05D005412 1.5e-10 69.7 51 68.6
EL10Ac3g06030 Beta vulgaris HOM05D004685 ORTHO05D005412 1.9e-10 69.3 52 67.3
Lsat_1_v5_gn_3_104860 Lactuca sativa HOM05D004685 ORTHO05D005412 1.9e-10 69.3 51 64.7
Lsat_1_v5_gn_3_111900 Lactuca sativa HOM05D004685 ORTHO05D005412 1.9e-10 69.3 51 66.7
Oeu015936.3 Olea europaea HOM05D004685 ORTHO05D005412 1.9e-10 69.3 51 70.6
Psat5g291640 Pisum sativum HOM05D004685 ORTHO05D005412 1.9e-10 69.3 51 68.6
SalBow6G3785 Salvia bowleyana HOM05D004685 ORTHO05D005412 1.9e-10 69.3 52 67.3
Hund12396 Selenicereus undatus HOM05D004685 ORTHO05D005412 1.9e-10 69.3 52 65.4
TPR.G6599 Trifolium pratense HOM05D004685 ORTHO05D005412 1.9e-10 69.3 51 68.6
arahy.Tifrunner.gnm1.ann1.0IGH5Q Arachis hypogaea HOM05D004685 ORTHO05D005412 2.5e-10 68.9 51 64.7
BcaB01g04083 Brassica carinata HOM05D004685 ORTHO05D005412 2.5e-10 68.9 51 64.7
BcaC01g06012 Brassica carinata HOM05D004685 ORTHO05D005412 2.5e-10 68.9 51 64.7
Lj3g0020450 Lotus japonicus HOM05D004685 ORTHO05D005412 2.5e-10 68.9 51 66.7
TPR.G34220 Trifolium pratense HOM05D004685 ORTHO05D005412 3.3e-10 68.6 51 64.7
Thhalv10016666m.g Eutrema salsugineum HOM05D004685 ORTHO05D005412 4.3e-10 68.2 51 64.7
Lalb_Chr14g0372611 Lupinus albus HOM05D004685 ORTHO05D005412 4.3e-10 68.2 51 66.7
MD03G1229700 Malus domestica HOM05D004685 ORTHO05D005412 4.3e-10 68.2 51 64.7
SalBow2G2136 Salvia bowleyana HOM05D004685 ORTHO05D005412 4.3e-10 68.2 51 68.6
FvH4_3g19760 Fragaria vesca HOM05D004685 ORTHO05D005412 5.6e-10 67.8 51 64.7
FAN11G3422 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.6e-10 67.8 51 64.7
FAN16G2549 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.6e-10 67.8 51 64.7
FAN21G0673 Fragaria x ananassa HOM05D004685 ORTHO05D005412 5.6e-10 67.8 51 64.7
MD11G1250200 Malus domestica HOM05D004685 ORTHO05D005412 5.6e-10 67.8 51 64.7
Medtr4g068180 Medicago truncatula HOM05D004685 ORTHO05D005412 5.6e-10 67.8 51 64.7
A04p23420 Brassica napus HOM05D004685 ORTHO05D005412 7.3e-10 67.4 51 64.7
C04p59720 Brassica napus HOM05D004685 ORTHO05D005412 7.3e-10 67.4 51 64.7
BolC4t27480H Brassica oleracea HOM05D002568 ORTHO05D005412 7.3e-10 67.4 51 64.7
BraA04t17869Z Brassica rapa HOM05D004685 ORTHO05D005412 7.3e-10 67.4 51 64.7
AUR62002365 Chenopodium quinoa HOM05D004685 ORTHO05D005412 7.3e-10 67.4 52 65.4
Migut.N03084 Erythranthe guttata HOM05D004685 ORTHO05D005412 7.3e-10 67.4 51 66.7
Nitab4.5_0004047g0070 Nicotiana tabacum HOM05D004685 ORTHO05D005412 7.3e-10 67.4 48 70.8
Sp4g13230 Schrenkiella parvula HOM05D004685 ORTHO05D005412 7.3e-10 67.4 51 64.7
Lalb_Chr24g0396631 Lupinus albus HOM05D004685 ORTHO05D005412 9.6e-10 67.0 51 66.7
Psat7g208360 Pisum sativum HOM05D004685 ORTHO05D005412 9.6e-10 67.0 51 64.7
FAN25G3192 Fragaria x ananassa HOM05D004685 ORTHO05D005412 1.3e-09 66.6 51 62.7
AL4G25610 Arabidopsis lyrata HOM05D004685 ORTHO05D005412 1.6e-09 66.2 51 62.7
AT2G30710 Arabidopsis thaliana HOM05D004685 ORTHO05D005412 1.6e-09 66.2 51 62.7
C03p20270 Brassica napus HOM05D004685 ORTHO05D005412 1.6e-09 66.2 51 62.7
CARHR124210 Cardamine hirsuta HOM05D004685 ORTHO05D005412 1.6e-09 66.2 51 62.7
AUR62023820 Chenopodium quinoa HOM05D004685 ORTHO05D005412 1.6e-09 66.2 52 63.5
Sabra11G0076000 Salix brachista HOM05D004685 ORTHO05D005412 1.6e-09 66.2 51 64.7
Carub.0004s1189 Capsella rubella HOM05D004685 ORTHO05D005412 2.8e-09 65.5 51 62.7
A03p17170 Brassica napus HOM05D004685 ORTHO05D005412 3.6e-09 65.1 51 60.8
SMO146G0212 Selaginella moellendorffii HOM05D004685 ORTHO05D005412 4.8e-09 64.7 50 64.0
Mapoly0111s0053 Marchantia polymorpha HOM05D004685 ORTHO05D005412 8.1e-09 63.9 51 64.7
AagrBONN_evm.TU.Sc2ySwM_362.1685 Anthoceros agrestis HOM05D004685 ORTHO05D005412 1.4e-08 63.2 51 60.8
Pp3c9_25750 Physcomitrium patens HOM05D004685 ORTHO05D005412 1.3e-06 56.6 51 54.9
Cpa.g.sc9.333 Carica papaya HOM05D004685 ORTHO05D005412 6.4e-06 54.3 30 76.7


User provided reference genes

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