Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 0.0e+00 1085.1 528 100.0
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 1.2e-193 680.2 586 56.8
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.7e-192 674.5 590 57.3
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.2e-190 669.5 590 56.6
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.7e-190 668.7 592 56.8
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 1.1e-189 667.2 590 55.1
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 1.0e-187 660.6 590 55.8
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 1.7e-187 659.8 590 55.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.7e-187 659.8 589 55.7
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 2.9e-187 659.1 590 55.4
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 3.8e-187 658.7 589 56.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.5e-186 656.8 587 55.5
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 2.5e-186 656.0 590 55.6
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 4.2e-186 655.2 589 54.2
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 4.2e-186 655.2 590 54.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 5.5e-186 654.8 591 54.7
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 5.5e-186 654.8 590 55.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.2e-185 653.7 590 54.4
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 1.2e-185 653.7 585 55.6
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.8e-184 649.8 591 54.5
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 3.0e-184 649.0 590 54.1
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 8.8e-184 647.5 590 54.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 1.2e-183 647.1 589 55.7
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 1.2e-183 647.1 588 55.4
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 1.2e-183 647.1 590 54.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 2.0e-183 646.4 590 53.9
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 9.7e-183 644.0 590 54.7
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 1.3e-182 643.7 590 53.7
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 1.3e-182 643.7 590 54.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 1.7e-182 643.3 593 54.0
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 1.7e-182 643.3 593 54.1
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 2.2e-182 642.9 590 54.1
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 2.8e-182 642.5 590 54.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 2.8e-182 642.5 590 53.6
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 6.3e-182 641.3 590 53.6
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.1e-181 640.6 591 53.8
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 1.4e-181 640.2 590 53.6
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 1.8e-181 639.8 590 54.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 1.8e-181 639.8 592 53.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 2.4e-181 639.4 590 54.4
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 4.1e-181 638.6 593 53.3
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 4.1e-181 638.6 593 53.3
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 5.3e-181 638.3 587 53.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 7.0e-181 637.9 589 54.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 7.0e-181 637.9 589 54.8
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 7.0e-181 637.9 593 52.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 7.0e-181 637.9 590 54.6
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 7.0e-181 637.9 582 54.0
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 7.0e-181 637.9 590 53.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.1e-181 637.5 590 54.1
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 9.1e-181 637.5 586 53.4
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 1.2e-180 637.1 593 53.3
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.6e-180 636.7 590 53.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 5.9e-180 634.8 590 54.1
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 7.7e-180 634.4 590 53.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 7.7e-180 634.4 582 55.2
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 1.3e-179 633.6 589 54.2
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 2.9e-179 632.5 607 52.6
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 8.5e-179 630.9 589 54.3
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.9e-178 629.8 598 52.7
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 1.9e-178 629.8 593 52.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 2.5e-178 629.4 590 53.1
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 7.2e-178 627.9 591 52.8
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 2.1e-177 626.3 578 53.8
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 2.7e-177 625.9 590 52.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.6e-177 625.5 595 52.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 3.6e-177 625.5 589 52.8
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 3.0e-176 622.5 588 53.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 5.2e-176 621.7 590 52.0
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 5.2e-176 621.7 578 53.8
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 4.4e-175 618.6 592 54.4
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 5.7e-175 618.2 614 51.1
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 7.5e-175 617.8 620 51.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 6.3e-174 614.8 589 52.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 1.4e-173 613.6 593 52.3
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 4.1e-173 612.1 600 52.2
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 7.7e-172 607.8 593 51.6
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 1.3e-171 607.1 566 53.5
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 5.0e-171 605.1 587 52.0
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.6e-171 604.4 594 51.9
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 8.6e-171 604.4 589 51.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.6e-169 600.1 589 51.3
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.6e-169 600.1 589 51.4
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.6e-169 600.1 590 52.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 4.7e-169 598.6 589 51.3
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 8.0e-169 597.8 591 51.3
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 8.0e-169 597.8 589 50.9
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 1.8e-168 596.7 589 51.1
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 1.8e-168 596.7 589 51.1
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 7.8e-164 581.3 536 54.1
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 8.6e-163 577.8 590 50.3
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 2.5e-162 576.2 601 49.6
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 1.8e-160 570.1 592 49.5
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 1.2e-156 557.4 590 48.6
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 1.0e-155 554.3 734 42.4
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 6.2e-153 545.0 618 47.4
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.9e-135 484.6 531 48.2
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.9e-134 482.3 333 65.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 4.9e-134 482.3 333 65.5
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 8.4e-134 481.5 329 65.7
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.6e-132 477.2 450 52.4
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 3.6e-129 466.1 516 48.4
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 1.2e-127 461.1 591 45.2
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 8.4e-126 454.9 333 62.2
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 7.1e-125 451.8 600 40.0
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.8e-121 439.1 325 61.2
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 2.2e-118 430.3 285 67.4
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 6.9e-112 408.7 477 46.3
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 4.2e-109 399.4 568 37.5
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.7e-108 396.7 604 37.4
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-107 394.8 463 46.4
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.7e-107 391.7 608 37.0
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 7.6e-103 378.6 285 60.0
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.9e-102 376.7 633 32.7
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 9.0e-96 355.1 284 58.8
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.1e-91 339.3 426 43.9
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.8e-65 253.1 156 68.6
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 8.3e-65 252.3 146 71.2
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.5e-50 204.9 173 56.6
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.2e-44 185.3 173 53.2
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 8.0e-44 182.6 210 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.3e-37 159.5 317 32.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.2e-36 158.7 240 42.9
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.8e-34 149.8 212 39.2
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 5.6e-29 133.3 318 28.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.8e-27 128.3 281 27.4
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 4.0e-27 127.1 130 52.3
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 7.8e-23 112.8 254 29.9
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.9e-22 110.5 129 46.5
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.3e-21 107.1 89 51.7
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.2e-19 100.1 220 32.3
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.4e-16 92.0 79 58.2
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.2e-15 89.0 78 56.4
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.5e-15 87.4 281 23.1
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.0e-14 85.9 106 50.0
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.5e-13 82.0 71 54.9
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.8e-09 67.4 84 46.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 6.4e-09 66.6 188 27.7
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 4.2e-08 63.9 51 54.9
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 6.0e-07 60.1 53 56.6
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.0e-06 59.3 102 34.3
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.3e-06 58.9 62 45.2
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.6e-06 56.6 30 83.3
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 8.7e-06 56.2 30 76.7


User provided reference genes

Program Settings