Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 1.9e-78 295.8 151 100.0
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 9.9e-64 246.9 144 84.7
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 2.2e-63 245.7 140 87.9
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.8e-63 245.0 140 86.4
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 3.8e-63 245.0 144 84.7
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.9e-63 244.6 140 86.4
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.9e-63 244.6 140 86.4
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 4.9e-63 244.6 140 86.4
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.9e-63 244.6 140 86.4
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.9e-63 244.6 140 86.4
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.1e-62 243.4 140 85.7
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 1.9e-62 242.7 140 85.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 4.2e-62 241.5 140 85.0
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 5.4e-62 241.1 140 85.7
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 7.1e-62 240.7 140 84.3
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 9.3e-62 240.4 140 85.7
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.6e-61 239.6 140 85.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 2.7e-61 238.8 140 85.0
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 2.7e-61 238.8 140 84.3
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 2.7e-61 238.8 140 84.3
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 2.7e-61 238.8 140 84.3
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 2.7e-61 238.8 140 85.7
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.5e-61 238.4 140 84.3
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.0e-61 237.7 140 84.3
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 7.9e-61 237.3 136 86.0
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 1.3e-60 236.5 140 85.0
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 1.3e-60 236.5 140 82.9
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 2.3e-60 235.7 144 79.9
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 6.7e-60 234.2 149 78.5
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 6.7e-60 234.2 148 78.4
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 6.7e-60 234.2 137 84.7
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 6.7e-60 234.2 140 82.9
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 6.7e-60 234.2 140 83.6
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 8.7e-60 233.8 142 81.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 8.7e-60 233.8 136 83.8
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.1e-59 233.4 144 81.2
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.9e-59 232.6 137 86.1
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.9e-59 232.6 134 87.3
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 2.5e-59 232.3 140 82.9
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 3.3e-59 231.9 140 82.1
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 4.3e-59 231.5 144 79.2
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 4.3e-59 231.5 140 82.1
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 5.6e-59 231.1 140 82.9
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 5.6e-59 231.1 140 81.4
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 5.6e-59 231.1 140 80.7
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 7.4e-59 230.7 147 78.2
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 7.4e-59 230.7 150 76.7
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 9.6e-59 230.3 140 82.1
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.3e-58 229.9 140 80.0
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.3e-58 229.9 140 80.7
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 1.3e-58 229.9 140 82.9
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.1e-58 229.2 135 86.7
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.1e-58 229.2 135 86.7
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 3.6e-58 228.4 140 80.0
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 4.8e-58 228.0 137 81.8
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 4.8e-58 228.0 140 79.3
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 4.8e-58 228.0 134 84.3
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 6.2e-58 227.6 140 78.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 6.2e-58 227.6 147 76.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 6.2e-58 227.6 137 84.7
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 8.1e-58 227.3 140 81.4
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 8.1e-58 227.3 140 81.4
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 8.1e-58 227.3 136 82.4
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 8.1e-58 227.3 134 85.1
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.1e-57 226.9 134 83.6
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.1e-57 226.9 140 79.3
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 1.1e-57 226.9 140 79.3
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.4e-57 226.5 134 84.3
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.4e-57 226.5 140 78.6
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.8e-57 226.1 135 83.7
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.8e-57 226.1 139 80.6
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 1.8e-57 226.1 134 84.3
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.8e-57 226.1 134 84.3
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.8e-57 226.1 134 84.3
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.8e-57 226.1 134 84.3
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.8e-57 226.1 134 85.1
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 2.4e-57 225.7 134 82.8
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.0e-57 224.9 140 77.1
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.0e-57 224.9 140 77.1
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 9.0e-57 223.8 134 82.1
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 9.0e-57 223.8 140 80.7
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.2e-56 223.4 140 80.7
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.2e-56 223.4 136 81.6
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 1.5e-56 223.0 140 79.3
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 1.5e-56 223.0 140 79.3
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.5e-56 223.0 136 80.1
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.6e-56 222.2 140 78.6
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.6e-56 222.2 140 77.1
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 7.6e-56 220.7 136 80.1
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 7.6e-56 220.7 140 79.3
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 7.6e-56 220.7 140 79.3
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 7.6e-56 220.7 136 80.1
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 9.9e-56 220.3 131 82.4
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 9.9e-56 220.3 134 80.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.3e-55 219.9 134 83.6
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.3e-55 219.9 136 79.4
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.2e-55 219.2 139 78.4
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 3.8e-55 218.4 136 78.7
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 4.9e-55 218.0 130 83.8
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 7.1e-54 214.2 166 69.3
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.7e-53 212.2 113 92.9
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 4.6e-53 211.5 153 72.5
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 6.0e-53 211.1 136 77.2
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 3.9e-52 208.4 145 74.5
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 6.7e-52 207.6 145 74.5
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 8.7e-52 207.2 139 74.8
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.5e-51 205.7 147 72.1
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 2.5e-51 205.7 147 72.1
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 3.3e-51 205.3 155 67.7
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.5e-48 196.4 173 62.4
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 6.0e-45 184.5 143 66.4
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 7.9e-45 184.1 140 70.0
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 3.7e-42 175.3 103 82.5
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 9.3e-38 160.6 101 74.3
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 7.9e-37 157.5 93 84.9
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 6.9e-33 144.4 117 61.5
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 3.4e-32 142.1 135 59.3
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.2e-31 139.4 89 75.3
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 8.2e-26 120.9 153 48.4
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.5e-24 116.7 128 51.6
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 2.0e-24 116.3 110 59.1
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 4.2e-22 108.6 120 47.5
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 7.4e-19 97.8 63 77.8
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 4.1e-17 92.0 57 82.5
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.0e-16 89.7 58 79.3
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 9.4e-14 80.9 53 77.4
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 7.5e-11 71.2 108 40.7
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.1e-09 67.4 50 68.0


User provided reference genes

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