Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 0.0e+00 1461.0 734 100.0
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 4.4e-157 559.3 681 49.8
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 4.6e-146 522.7 668 49.0
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 8.6e-145 518.5 679 48.9
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 5.6e-144 515.8 705 47.7
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.0e-142 511.5 697 46.9
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.8e-142 510.8 648 49.4
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 3.2e-139 500.0 699 46.6
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.2e-138 498.0 685 47.0
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.6e-138 497.7 672 49.0
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 4.6e-138 496.1 676 47.3
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.0e-137 495.0 681 47.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 8.6e-137 491.9 687 47.5
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 4.3e-136 489.6 692 47.1
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 9.5e-136 488.4 707 46.0
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.2e-135 488.0 642 47.7
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.1e-135 487.3 708 46.5
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 6.2e-135 485.7 685 45.8
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 8.1e-135 485.3 621 49.9
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.1e-134 485.0 695 45.6
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 2.3e-134 483.8 705 45.7
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 3.1e-134 483.4 697 45.1
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 4.0e-134 483.0 687 47.3
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 8.9e-134 481.9 688 46.8
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 2.0e-133 480.7 668 46.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 4.4e-133 479.6 686 45.9
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 5.8e-133 479.2 663 45.6
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 7.5e-133 478.8 653 45.3
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.7e-132 477.6 688 45.8
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.7e-132 477.6 694 46.0
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 3.7e-132 476.5 689 45.1
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.9e-132 476.1 687 46.0
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 4.9e-132 476.1 683 46.1
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 8.3e-132 475.3 698 45.4
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.1e-131 474.9 653 45.9
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.4e-131 474.6 679 44.6
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 4.1e-131 473.0 623 49.1
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 5.4e-131 472.6 638 46.9
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 7.1e-131 472.2 683 45.1
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 9.2e-131 471.9 686 45.6
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 9.2e-131 471.9 680 46.0
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 9.2e-131 471.9 694 45.8
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 7.8e-130 468.8 659 45.4
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.7e-129 467.6 684 45.2
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 2.3e-129 467.2 670 46.0
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 5.1e-129 466.1 700 45.6
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.5e-128 464.5 662 45.2
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 3.3e-128 463.4 685 45.1
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.6e-127 461.1 676 43.6
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 6.2e-127 459.1 697 44.2
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 8.1e-127 458.8 684 46.3
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.1e-126 458.4 675 44.0
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 5.2e-126 456.1 679 46.1
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 8.9e-126 455.3 667 45.1
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 1.2e-125 454.9 704 43.9
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.2e-125 454.9 814 40.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 2.0e-125 454.1 686 43.7
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 2.0e-125 454.1 647 46.2
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 3.4e-125 453.4 674 44.8
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 5.8e-125 452.6 673 44.6
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 7.6e-125 452.2 691 45.4
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 7.6e-125 452.2 691 43.6
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.3e-124 451.4 631 46.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.7e-124 451.1 668 45.7
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.9e-124 450.3 642 45.3
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 4.9e-124 449.5 685 44.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 6.4e-124 449.1 681 44.1
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-123 448.4 650 45.8
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.1e-123 448.4 649 45.6
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.4e-123 448.0 685 44.4
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 1.9e-123 447.6 650 45.7
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.9e-123 447.6 681 44.2
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 3.2e-123 446.8 703 44.2
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 3.2e-123 446.8 719 42.8
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 4.1e-123 446.4 668 45.2
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.2e-122 444.9 626 46.0
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 1.2e-122 444.9 677 44.6
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 2.1e-122 444.1 677 44.0
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 4.6e-122 443.0 626 46.0
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 6.0e-122 442.6 650 45.8
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 2.3e-121 440.7 680 44.6
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 3.0e-121 440.3 670 44.9
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 3.9e-121 439.9 676 44.1
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 3.9e-121 439.9 644 45.5
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 1.1e-120 438.3 708 43.4
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.5e-120 438.0 691 43.7
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.9e-120 437.6 606 46.0
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 4.3e-120 436.4 723 42.3
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 4.3e-120 436.4 659 43.7
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 1.6e-119 434.5 651 45.5
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.1e-119 434.1 639 44.9
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 6.2e-119 432.6 673 44.7
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 8.1e-119 432.2 854 38.6
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.4e-118 430.6 675 44.3
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 6.8e-118 429.1 732 41.4
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 6.8e-118 429.1 646 44.9
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.4e-115 421.4 635 42.8
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.2e-115 420.2 703 42.5
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 9.3e-115 418.7 630 43.8
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.2e-114 418.3 684 42.8
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 8.7e-113 412.1 730 41.2
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.6e-111 407.9 676 43.0
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.6e-111 407.9 589 44.1
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 9.0e-110 402.1 681 41.9
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.5e-109 401.4 685 41.9
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 2.9e-108 397.1 628 41.1
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 9.3e-107 392.1 712 40.9
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 6.0e-106 389.4 618 42.9
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.0e-106 389.4 678 40.6
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 2.4e-102 377.5 657 38.8
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 4.0e-102 376.7 665 41.5
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 7.6e-101 372.5 618 42.2
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.8e-97 361.3 593 42.0
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 8.7e-97 359.0 630 39.5
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.3e-92 345.1 747 37.5
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 7.1e-91 339.3 672 37.2
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 7.4e-88 329.3 578 40.8
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 9.0e-86 322.4 600 39.3
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.0e-76 292.4 501 41.9
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 6.7e-73 279.6 622 34.6
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 3.7e-71 273.9 633 35.2
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 8.2e-71 272.7 430 43.5
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 3.1e-62 244.2 630 31.9
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 4.8e-47 193.7 658 31.0
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 8.5e-44 183.0 218 50.9
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 3.4e-40 171.0 172 56.4
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.4e-40 171.0 168 58.3
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 6.3e-39 166.8 734 27.2
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.8e-38 165.2 210 47.1
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.8e-38 165.2 489 31.1
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.0e-36 157.1 307 38.1
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.0e-28 132.9 636 25.9
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.5e-27 128.3 98 69.4
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 4.7e-26 124.0 122 55.7
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 1.1e-19 102.8 105 48.6
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 1.1e-17 96.3 126 48.4
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.1e-12 77.4 83 57.8
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 1.6e-10 72.4 109 40.4
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.6e-10 72.4 62 54.8


User provided reference genes

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