Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.8e-162 575.9 298 100.0
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 5.4e-106 388.3 292 69.5
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 7.1e-106 387.9 295 71.9
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.7e-105 386.0 281 71.9
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 2.7e-105 386.0 294 70.7
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 3.5e-105 385.6 292 72.3
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 7.9e-105 384.4 295 68.5
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.9e-104 382.1 296 67.6
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.5e-103 379.4 297 67.7
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.5e-103 379.4 297 67.7
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 3.3e-103 379.0 291 68.7
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 3.3e-103 379.0 291 68.4
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 3.3e-103 379.0 297 69.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.3e-102 377.1 282 70.6
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.6e-102 376.7 297 68.4
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.6e-102 376.7 294 68.7
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 1.1e-101 374.0 295 68.1
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.1e-101 374.0 296 67.6
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.4e-101 373.6 297 67.3
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.4e-101 373.6 298 68.1
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.8e-101 373.2 297 67.7
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.4e-101 372.9 293 67.9
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.4e-101 372.9 293 67.9
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.1e-101 372.5 297 67.0
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 4.0e-101 372.1 296 66.9
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.0e-101 372.1 297 67.7
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 5.3e-101 371.7 293 67.2
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 5.3e-101 371.7 307 67.8
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.3e-101 371.7 291 69.1
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 5.3e-101 371.7 296 66.6
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.0e-100 369.8 281 69.8
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.6e-100 369.4 297 68.4
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.6e-100 369.4 240 77.5
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 4.5e-100 368.6 295 65.8
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 4.5e-100 368.6 301 67.1
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 7.6e-100 367.9 297 66.7
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 7.6e-100 367.9 297 68.4
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 7.6e-100 367.9 244 76.2
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 7.6e-100 367.9 298 67.4
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 7.6e-100 367.9 296 65.2
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 9.9e-100 367.5 285 68.8
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.3e-99 367.1 290 68.6
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.3e-99 367.1 293 67.2
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.3e-99 367.1 298 68.5
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.3e-99 367.1 292 69.9
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.7e-99 366.7 294 67.7
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.7e-99 366.7 293 67.6
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.7e-99 366.7 292 66.4
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 2.2e-99 366.3 308 65.6
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.9e-99 365.9 286 68.9
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 2.9e-99 365.9 295 67.5
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.8e-99 365.5 297 67.0
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 4.9e-99 365.2 288 67.7
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 4.9e-99 365.2 239 77.4
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 6.4e-99 364.8 295 65.8
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 8.4e-99 364.4 291 66.7
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-98 364.0 296 69.6
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.1e-98 364.0 289 68.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.4e-98 363.6 295 66.8
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.4e-98 363.6 291 68.7
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.9e-98 363.2 291 64.9
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.9e-98 363.2 238 76.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.4e-98 362.8 292 66.1
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.2e-98 362.5 295 67.1
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.2e-98 362.5 297 65.7
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 3.2e-98 362.5 280 68.9
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 4.2e-98 362.1 291 64.3
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 5.5e-98 361.7 295 66.1
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 7.1e-98 361.3 288 67.4
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 7.1e-98 361.3 293 66.6
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 9.3e-98 360.9 284 65.5
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.2e-97 360.5 291 66.7
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.6e-97 360.1 308 64.6
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.1e-97 359.8 290 65.9
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 2.1e-97 359.8 296 64.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 3.5e-97 359.0 288 68.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 3.5e-97 359.0 294 65.3
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 4.6e-97 358.6 289 66.4
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 6.0e-97 358.2 288 66.3
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 6.0e-97 358.2 289 66.4
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.9e-97 357.8 289 65.7
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.9e-97 357.8 292 68.2
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.3e-96 357.1 300 63.7
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.3e-96 357.1 296 65.9
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.3e-96 357.1 289 67.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-96 357.1 289 66.1
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-96 357.1 289 66.1
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.8e-96 356.7 291 65.6
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.8e-96 356.7 278 67.6
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.3e-96 356.3 297 64.3
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.3e-96 356.3 297 64.3
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 5.1e-96 355.1 288 66.0
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 5.1e-96 355.1 288 66.0
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 8.7e-96 354.4 288 65.6
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 8.7e-96 354.4 332 61.7
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.1e-95 354.0 288 65.6
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 5.6e-95 351.7 293 63.8
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 5.6e-95 351.7 242 73.6
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.4e-95 351.3 296 66.2
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 7.4e-95 351.3 317 62.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 9.6e-95 350.9 293 63.8
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 2.8e-94 349.4 297 63.0
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 3.7e-94 349.0 288 64.2
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.8e-94 348.6 275 68.4
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.8e-94 348.6 275 68.4
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 4.8e-94 348.6 296 62.8
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.1e-93 347.4 288 63.9
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.1e-93 345.9 292 64.0
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.1e-93 345.9 248 73.0
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 6.9e-93 344.7 315 61.0
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.8e-92 341.7 286 63.3
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.7e-91 340.1 298 63.8
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 1.7e-91 340.1 287 63.8
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.2e-91 339.7 343 56.6
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.9e-91 339.3 345 56.2
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 8.4e-91 337.8 227 73.1
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.4e-90 337.0 266 66.5
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 5.5e-90 335.1 349 55.0
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 1.6e-89 333.6 224 74.6
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.8e-88 330.1 221 74.2
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.5e-87 327.0 355 54.4
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.5e-87 327.0 268 64.9
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 4.8e-86 322.0 282 63.1
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 6.9e-85 318.2 200 79.5
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 3.4e-84 315.8 336 56.2
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 7.6e-84 314.7 247 67.6
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 6.5e-83 311.6 290 59.0
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 9.3e-82 307.8 226 71.2
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.7e-79 298.5 219 69.4
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.7e-79 298.5 242 63.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 7.4e-79 298.1 193 77.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.9e-76 288.5 225 65.3
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.3e-75 287.3 199 70.9
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 2.2e-75 286.6 213 67.1
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 6.5e-75 285.0 233 64.8
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.7e-73 279.6 291 56.4
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 7.4e-71 271.6 230 65.2
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 5.0e-67 258.8 225 61.8
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 7.2e-66 255.0 261 55.6
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 7.2e-66 255.0 227 58.1
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.6e-55 219.9 225 50.7
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 9.7e-55 218.0 224 51.8
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 3.7e-54 216.1 186 62.9
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 5.9e-52 208.8 186 60.8
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 5.0e-51 205.7 241 49.4
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 5.7e-47 192.2 147 67.3
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.1e-42 177.9 181 54.7
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 3.7e-38 162.9 242 40.1
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 1.1e-34 151.4 165 52.7
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 4.7e-25 119.4 71 85.9
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.4e-21 107.8 85 70.6
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.7e-20 103.6 59 88.1
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 3.4e-15 86.7 118 45.8
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 3.4e-15 86.7 281 31.0
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.1e-10 71.6 47 76.6
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.3e-10 70.1 75 49.3


User provided reference genes

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