Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.5e-142 508.8 273 100.0
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 1.5e-94 350.1 273 59.0
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 1.4e-92 343.6 273 61.2
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 7.0e-92 341.3 273 60.4
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 1.6e-91 340.1 273 60.4
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.5e-91 339.0 273 59.3
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 4.5e-91 338.6 276 56.9
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 4.5e-91 338.6 273 61.5
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 7.7e-91 337.8 274 59.5
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.3e-90 337.0 276 60.9
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.2e-90 336.3 276 56.9
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 5.0e-90 335.1 278 57.6
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 5.0e-90 335.1 278 58.3
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 8.5e-90 334.3 273 58.6
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 1.1e-89 334.0 278 57.2
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 1.5e-89 333.6 286 61.2
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 3.2e-89 332.4 276 58.7
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 4.2e-89 332.0 274 59.1
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 5.5e-89 331.6 274 58.0
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 5.5e-89 331.6 280 56.8
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 9.4e-89 330.9 273 58.6
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 9.4e-89 330.9 273 59.3
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 1.2e-88 330.5 273 57.9
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.2e-88 330.5 273 58.6
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.2e-88 330.5 273 58.6
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.6e-88 330.1 273 58.2
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 2.1e-88 329.7 281 59.4
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 2.7e-88 329.3 272 56.6
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.7e-88 329.3 272 57.7
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 2.7e-88 329.3 237 65.4
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 3.6e-88 328.9 272 57.4
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.4e-87 327.0 269 57.2
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 1.4e-87 327.0 274 58.0
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.4e-87 327.0 276 56.9
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.8e-87 326.6 271 59.0
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 1.8e-87 326.6 276 56.9
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 1.8e-87 326.6 269 58.4
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 1.8e-87 326.6 277 63.5
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 2.3e-87 326.2 274 56.9
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 3.0e-87 325.9 238 63.9
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 3.0e-87 325.9 274 57.7
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 3.0e-87 325.9 238 64.3
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 3.0e-87 325.9 274 57.7
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 4.0e-87 325.5 277 57.4
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 5.2e-87 325.1 273 58.2
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 5.2e-87 325.1 273 57.9
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 5.2e-87 325.1 277 57.8
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 1.2e-86 323.9 279 57.0
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 1.2e-86 323.9 280 56.4
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 1.5e-86 323.6 236 63.6
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.5e-86 323.6 279 55.2
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 1.5e-86 323.6 278 55.0
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.4e-86 322.4 275 57.5
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 3.4e-86 322.4 281 58.0
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 4.4e-86 322.0 280 57.1
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 7.5e-86 321.2 279 57.3
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 7.5e-86 321.2 274 56.2
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 9.8e-86 320.9 281 57.3
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 9.8e-86 320.9 236 63.6
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 9.8e-86 320.9 273 57.9
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.2e-85 319.7 281 56.6
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.8e-85 319.3 292 55.1
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.7e-85 318.9 282 58.2
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 4.8e-85 318.5 274 58.8
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 4.8e-85 318.5 275 63.3
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 8.3e-85 317.8 280 56.1
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 8.3e-85 317.8 281 57.3
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 8.3e-85 317.8 281 57.7
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 8.3e-85 317.8 282 56.7
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 8.3e-85 317.8 281 57.7
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 8.3e-85 317.8 282 56.7
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 8.3e-85 317.8 281 57.7
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 8.3e-85 317.8 281 57.7
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 8.3e-85 317.8 276 56.2
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 8.3e-85 317.8 281 57.3
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 8.3e-85 317.8 273 57.1
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 8.3e-85 317.8 271 64.2
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 8.3e-85 317.8 236 63.1
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 1.4e-84 317.0 281 56.9
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.8e-84 316.6 281 57.7
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 1.8e-84 316.6 281 56.9
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 1.8e-84 316.6 278 56.1
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 1.8e-84 316.6 273 57.5
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 2.4e-84 316.2 283 56.5
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 2.4e-84 316.2 280 56.1
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.4e-84 316.2 275 58.2
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 2.4e-84 316.2 272 58.8
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 3.1e-84 315.8 280 55.4
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 3.1e-84 315.8 281 56.9
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 4.1e-84 315.5 283 56.2
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 5.4e-84 315.1 282 56.0
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 7.0e-84 314.7 284 55.3
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 7.0e-84 314.7 284 55.3
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 9.1e-84 314.3 283 56.5
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 9.1e-84 314.3 236 62.7
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.2e-83 313.9 280 55.7
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.6e-83 313.5 283 56.2
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.6e-83 313.5 281 56.6
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.6e-83 313.5 283 56.2
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 2.0e-83 313.2 274 55.5
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.7e-83 312.8 277 54.9
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.5e-83 312.4 277 55.6
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 7.7e-83 311.2 278 55.4
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 7.7e-83 311.2 273 56.0
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 1.0e-82 310.8 278 56.8
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 1.3e-82 310.5 278 56.8
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 1.3e-82 310.5 273 55.3
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.3e-82 309.7 277 54.9
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 2.9e-82 309.3 238 60.9
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 3.8e-82 308.9 273 55.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 3.8e-82 308.9 238 59.7
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.8e-82 308.9 237 61.2
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 5.0e-82 308.5 276 55.8
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 5.0e-82 308.5 275 54.2
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 5.0e-82 308.5 275 54.2
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 1.5e-81 307.0 236 60.6
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.5e-81 307.0 276 53.6
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.5e-81 307.0 274 55.5
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 2.5e-81 306.2 276 54.7
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 4.2e-81 305.4 274 57.3
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 4.2e-81 305.4 274 54.7
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 4.2e-81 305.4 274 56.2
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 5.5e-81 305.1 276 53.6
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 5.5e-81 305.1 239 59.4
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 1.2e-80 303.9 269 57.2
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 2.8e-80 302.8 273 54.6
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 3.6e-80 302.4 273 55.7
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 3.6e-80 302.4 232 62.5
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 3.6e-80 302.4 276 60.9
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 3.6e-80 302.4 274 54.4
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-79 300.8 237 58.6
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.0e-79 300.8 237 58.6
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 2.3e-79 299.7 273 53.8
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 5.2e-79 298.5 238 59.7
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 3.4e-78 295.8 242 58.7
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 5.7e-78 295.0 275 60.0
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 9.8e-78 294.3 305 51.1
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 2.2e-77 293.1 236 58.5
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 2.2e-77 293.1 270 52.2
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 4.9e-77 292.0 274 55.1
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 9.2e-76 287.7 274 51.8
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 8.0e-72 274.6 237 56.1
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 9.8e-70 267.7 235 54.0
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.4e-68 263.1 273 50.2
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 5.4e-68 261.9 273 50.2
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 1.3e-66 257.3 224 53.6
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 8.6e-66 254.6 198 58.1
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.3e-65 252.7 241 54.8
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 4.3e-65 252.3 240 49.2
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 3.6e-64 249.2 180 64.4
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 4.4e-62 242.3 195 59.0
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 3.3e-57 226.1 235 46.8
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 5.6e-57 225.3 283 42.4
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 5.8e-54 215.3 185 53.0
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 1.1e-49 201.1 187 54.5
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 3.4e-46 189.5 155 56.8
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 1.0e-42 177.9 207 44.0
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 3.3e-41 172.9 155 54.2
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 5.6e-41 172.2 157 54.1
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 7.3e-41 171.8 235 37.9
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.4e-38 162.9 207 44.9
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 6.4e-37 158.7 172 49.4
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 3.1e-31 139.8 138 53.6
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 5.3e-31 139.0 139 52.5
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 5.3e-31 139.0 139 52.5
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-22 109.0 121 39.7
BcaNung05202 Brassica carinata HOM05D004171 ORTHO05D004983 1.3e-18 97.8 113 46.0
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 4.3e-17 92.8 73 58.9
CDE05G1305 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 1.8e-10 70.9 180 30.6


User provided reference genes

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