Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012356 Vanilla planifolia HOM05D002949 ORTHO05D003151 8.0e-91 337.0 165 100.0
HPP92_014080 Vanilla planifolia HOM05D002949 ORTHO05D003151 4.6e-38 161.8 164 53.0
HanXRQChr16g0517451 Helianthus annuus HOM05D002949 ORTHO05D003151 9.9e-17 90.9 127 38.6
ECA236G1522 Erigeron canadensis HOM05D002949 ORTHO05D003151 6.0e-14 81.6 104 41.3
HanXRQChr16g0502961 Helianthus annuus HOM05D002949 ORTHO05D003151 7.9e-14 81.3 102 40.2
Eucgr.D00712 Eucalyptus grandis HOM05D002949 ORTHO05D003151 3.9e-13 79.0 164 32.3
Lsat_1_v5_gn_7_19621 Lactuca sativa HOM05D002949 ORTHO05D003151 3.9e-13 79.0 104 43.3
ECA234G2368 Erigeron canadensis HOM05D002949 ORTHO05D003151 1.9e-12 76.6 104 38.5
Lsat_1_v5_gn_4_57061 Lactuca sativa HOM05D002949 ORTHO05D003151 1.9e-12 76.6 99 40.4
GSVIVG01003193001 Vitis vinifera HOM05D007484 ORTHO05D003151 1.9e-12 76.6 132 35.6
Dinv40479 Davidia involucrata HOM05D002949 ORTHO05D003151 2.5e-12 76.3 128 34.4
TWI63G1783 Tripterygium wilfordii HOM05D002949 ORTHO05D003151 2.5e-12 76.3 129 35.7
AUR62016898 Chenopodium quinoa HOM05D002949 ORTHO05D003151 3.3e-12 75.9 111 36.0
Manes.16G020700 Manihot esculenta HOM05D002949 ORTHO05D003151 4.3e-12 75.5 102 39.2
Sabra11G0029400 Salix brachista HOM05D002949 ORTHO05D003151 4.3e-12 75.5 102 38.2
Atru.chr10.2010 Acer truncatum HOM05D002949 ORTHO05D003151 7.4e-12 74.7 128 35.2
Potri.004G034400 Populus trichocarpa HOM05D002949 ORTHO05D003151 7.4e-12 74.7 102 35.3
GSVIVG01003188001 Vitis vinifera HOM05D002949 ORTHO05D003151 7.4e-12 74.7 102 38.2
vmacro03809 Vaccinium macrocarpon HOM05D002949 ORTHO05D003151 9.6e-12 74.3 137 32.1
Gohir.A05G165700 Gossypium hirsutum HOM05D002949 ORTHO05D003151 1.3e-11 73.9 128 34.4
Thecc.06G199500 Theobroma cacao HOM05D002949 ORTHO05D003151 1.3e-11 73.9 127 33.1
Duzib192G0121 Durio zibethinus HOM05D002949 ORTHO05D003151 1.6e-11 73.6 128 31.2
EL10Ac8g20529 Beta vulgaris HOM05D002949 ORTHO05D003151 2.8e-11 72.8 132 33.3
Rhsim13G0169900 Rhododendron simsii HOM05D002949 ORTHO05D003151 2.8e-11 72.8 125 32.0
Os07g0561300 Oryza sativa ssp. japonica HOM05D002949 ORTHO05D003151 3.7e-11 72.4 97 44.3
CiPaw.09G158000 Carya illinoinensis HOM05D002949 ORTHO05D003151 4.8e-11 72.0 105 35.2
QL04p018313 Quercus lobata HOM05D002949 ORTHO05D003151 4.8e-11 72.0 103 37.9
CANSAT56G3193 Cannabis sativa HOM05D002949 ORTHO05D003151 6.2e-11 71.6 133 33.8
Cpa.g.sc2820.1 Carica papaya HOM05D002949 ORTHO05D003151 6.2e-11 71.6 128 35.9
Gohir.D10G021700 Gossypium hirsutum HOM05D002949 ORTHO05D003151 6.2e-11 71.6 103 33.0
Lj2A279T59 Lonicera japonica HOM05D002949 ORTHO05D003151 6.2e-11 71.6 128 35.2
Potri.011G042800 Populus trichocarpa HOM05D002949 ORTHO05D003151 6.2e-11 71.6 102 36.3
Ciclev10016832m.g Citrus clementina HOM05D002949 ORTHO05D003151 8.1e-11 71.2 123 32.5
COL.COLO4_31585 Corchorus olitorius HOM05D002949 ORTHO05D003151 8.1e-11 71.2 162 29.0
Gohir.D05G168700 Gossypium hirsutum HOM05D002949 ORTHO05D003151 8.1e-11 71.2 128 33.6
Hma1.2p1_1182F.1_g264820 Hydrangea macrophylla HOM05D002949 ORTHO05D003151 8.1e-11 71.2 130 35.4
Sabra04G0020200 Salix brachista HOM05D002949 ORTHO05D003151 8.1e-11 71.2 102 36.3
Gorai.009G173900 Gossypium raimondii HOM05D002949 ORTHO05D003151 1.1e-10 70.9 128 33.6
Aqoxy1G03877 Aquilegia oxysepala HOM05D002949 ORTHO05D003151 1.4e-10 70.5 133 36.1
MELO3C007321.2 Cucumis melo HOM05D002949 ORTHO05D003151 1.4e-10 70.5 104 35.6
SGA_v2.0_scaffold114G31981 Striga asiatica HOM05D002949 ORTHO05D003151 1.4e-10 70.5 125 35.2
Migut.M01213 Erythranthe guttata HOM05D002949 ORTHO05D003151 2.4e-10 69.7 99 38.4
Gohir.A10G020900 Gossypium hirsutum HOM05D002949 ORTHO05D003151 2.4e-10 69.7 99 32.3
Prupe.4G036800 Prunus persica HOM05D002949 ORTHO05D003151 2.4e-10 69.7 110 37.3
Gorai.011G022800 Gossypium raimondii HOM05D002949 ORTHO05D003151 3.1e-10 69.3 103 32.0
Lalb_Chr18g0057181 Lupinus albus HOM05D002949 ORTHO05D003151 3.1e-10 69.3 137 35.0
Zm00001eb106850 Zea mays HOM05D002949 ORTHO05D003151 3.1e-10 69.3 132 39.4
CsaV3_6G049750 Cucumis sativus L. HOM05D002949 ORTHO05D003151 4.0e-10 68.9 105 34.3
FAN11G3871 Fragaria x ananassa HOM05D002949 ORTHO05D003151 5.3e-10 68.6 139 32.4
MD10G1303400 Malus domestica HOM05D002949 ORTHO05D003151 5.3e-10 68.6 131 33.6
Oeu051329.1 Olea europaea HOM05D002949 ORTHO05D003151 5.3e-10 68.6 96 37.5
MSTRG.13182 Avicennia marina HOM05D002949 ORTHO05D003151 6.9e-10 68.2 99 35.4
FAN21G3300 Fragaria x ananassa HOM05D002949 ORTHO05D003151 6.9e-10 68.2 139 31.7
Gohir.A09G070900 Gossypium hirsutum HOM05D002949 ORTHO05D003151 6.9e-10 68.2 129 32.6
Actinidia24059 Actinidia chinensis HOM05D002949 ORTHO05D003151 9.0e-10 67.8 130 33.8
Actinidia26996 Actinidia chinensis HOM05D002949 ORTHO05D003151 9.0e-10 67.8 108 34.3
DCAR_004138 Daucus carota HOM05D002949 ORTHO05D003151 9.0e-10 67.8 105 36.2
Nn1g03898 Nelumbo nucifera HOM05D002949 ORTHO05D003151 9.0e-10 67.8 102 35.3
Zm00001eb324220 Zea mays HOM05D002949 ORTHO05D003151 9.0e-10 67.8 95 43.2
ClCG00G005360 Citrullus lanatus HOM05D002949 ORTHO05D003151 1.2e-09 67.4 104 35.6
ClCG01G022560 Citrullus lanatus HOM05D002949 ORTHO05D003151 1.2e-09 67.4 104 35.6
FvH4_3g04020 Fragaria vesca HOM05D002949 ORTHO05D003151 1.2e-09 67.4 139 31.7
Gorai.006G085400 Gossypium raimondii HOM05D002949 ORTHO05D003151 1.2e-09 67.4 129 31.0
Sed0028194 Sechium edule HOM05D002949 ORTHO05D003151 1.2e-09 67.4 129 32.6
THA.LOC104806276 Tarenaya hassleriana HOM05D002949 ORTHO05D003151 1.2e-09 67.4 115 35.7
TAR629G2049 Trochodendron aralioides HOM05D002949 ORTHO05D003151 1.2e-09 67.4 103 35.9
PGR004G0173 Punica granatum HOM05D002949 ORTHO05D003151 1.5e-09 67.0 110 33.6
unitig_21.g20225 Utricularia gibba HOM05D002949 ORTHO05D003151 1.5e-09 67.0 105 41.0
Duzib160G0394 Durio zibethinus HOM05D002949 ORTHO05D003151 2.0e-09 66.6 102 35.3
MD05G1325400 Malus domestica HOM05D002949 ORTHO05D003151 2.0e-09 66.6 103 37.9
TWI38G1696 Tripterygium wilfordii HOM05D002949 ORTHO05D003151 2.0e-09 66.6 103 33.0
DCAR_008070 Daucus carota HOM05D002949 ORTHO05D003151 2.6e-09 66.2 108 38.0
Oeu043690.1 Olea europaea HOM05D002949 ORTHO05D003151 2.6e-09 66.2 96 36.5
RcHm_v2.0_Chr2g0138281 Rosa chinensis HOM05D002949 ORTHO05D003151 2.6e-09 66.2 68 45.6
Sed0023614 Sechium edule HOM05D002949 ORTHO05D003151 2.6e-09 66.2 105 34.3
MSTRG.15935 Avicennia marina HOM05D002949 ORTHO05D003151 3.4e-09 65.9 99 35.4
FAN25G2238 Fragaria x ananassa HOM05D002949 ORTHO05D003151 3.4e-09 65.9 139 32.4
HanXRQChr05g0131241 Helianthus annuus HOM05D002949 ORTHO05D003151 4.5e-09 65.5 106 37.7
Aa31LG2G9330 Aethionema arabicum HOM05D002949 ORTHO05D003151 5.8e-09 65.1 110 31.8
CSS0042931 Camellia sinensis var. sinensis HOM05D002949 ORTHO05D003151 5.8e-09 65.1 128 28.9
Lj6g0014531 Lotus japonicus HOM05D002949 ORTHO05D003151 5.8e-09 65.1 99 39.4
MBI02_g06001_MAGBIO Magnolia biondii HOM05D002949 ORTHO05D003151 5.8e-09 65.1 108 30.6
THA.LOC104809546 Tarenaya hassleriana HOM05D002949 ORTHO05D003151 5.8e-09 65.1 99 34.3
Gohir.D09G070700 Gossypium hirsutum HOM05D002949 ORTHO05D003151 7.6e-09 64.7 129 30.2
Nitab4.5_0002222g0070 Nicotiana tabacum HOM05D002949 ORTHO05D003151 7.6e-09 64.7 129 34.9
Oeu059547.2 Olea europaea HOM05D002949 ORTHO05D003151 7.6e-09 64.7 95 35.8
Oeu014708.1 Olea europaea HOM05D002949 ORTHO05D003151 1.0e-08 64.3 99 33.3
arahy.Tifrunner.gnm1.ann1.CAN000 Arachis hypogaea HOM05D002949 ORTHO05D003151 1.3e-08 63.9 109 34.9
MSTRG.7290 Avicennia marina HOM05D002949 ORTHO05D003151 1.7e-08 63.5 97 35.1
RcHm_v2.0_Chr5g0006321 Rosa chinensis HOM05D002949 ORTHO05D003151 1.7e-08 63.5 132 31.8
arahy.Tifrunner.gnm1.ann1.72AI1G Arachis hypogaea HOM05D002949 ORTHO05D003151 2.2e-08 63.2 109 34.9
BcaNung02792 Brassica carinata HOM05D002949 ORTHO05D003151 2.2e-08 63.2 104 35.6
BolC1t01498H Brassica oleracea HOM05D002949 ORTHO05D003151 2.2e-08 63.2 104 35.6
CSS0030314 Camellia sinensis var. sinensis HOM05D002949 ORTHO05D003151 2.2e-08 63.2 102 33.3
PSO541G5210 Papaver somniferum HOM05D002949 ORTHO05D003151 2.2e-08 63.2 99 37.4
PSO675G0167 Papaver somniferum HOM05D002949 ORTHO05D003151 2.2e-08 63.2 99 37.4
unitig_749.g13642 Utricularia gibba HOM05D002949 ORTHO05D003151 2.2e-08 63.2 94 36.2
TAR626G0808 Trochodendron aralioides HOM05D002949 ORTHO05D003151 2.9e-08 62.8 99 37.4
Actinidia11808 Actinidia chinensis HOM05D002949 ORTHO05D003151 3.8e-08 62.4 103 35.0
BcaB04g20333 Brassica carinata HOM05D002949 ORTHO05D003151 3.8e-08 62.4 110 30.9
A01p12820 Brassica napus HOM05D002949 ORTHO05D003151 3.8e-08 62.4 104 35.6
BraA01t01226Z Brassica rapa HOM05D002949 ORTHO05D003151 3.8e-08 62.4 104 35.6
CARHR228170 Cardamine hirsuta HOM05D002949 ORTHO05D003151 3.8e-08 62.4 99 31.3
Hund23608 Selenicereus undatus HOM05D002949 ORTHO05D003151 3.8e-08 62.4 126 30.2
Sc17g0006630 Simmondsia chinensis HOM05D002949 ORTHO05D003151 3.8e-08 62.4 99 33.3
THA.LOC104819031 Tarenaya hassleriana HOM05D002949 ORTHO05D003151 3.8e-08 62.4 103 35.0
TWI38G1709 Tripterygium wilfordii HOM05D002949 ORTHO05D003151 3.8e-08 62.4 105 31.4
unitig_744.g24531 Utricularia gibba HOM05D002949 ORTHO05D003151 3.8e-08 62.4 95 42.1
Cc02_g12440 Coffea canephora HOM05D002949 ORTHO05D003151 4.9e-08 62.0 129 32.6
Lj4g0021109 Lotus japonicus HOM05D002949 ORTHO05D003151 4.9e-08 62.0 130 34.6
Lalb_Chr20g0119471 Lupinus albus HOM05D002949 ORTHO05D003151 4.9e-08 62.0 132 34.1
Psat7g108440 Pisum sativum HOM05D002949 ORTHO05D003151 4.9e-08 62.0 167 28.1
Solyc03g006640.3 Solanum lycopersicum HOM05D002949 ORTHO05D003151 4.9e-08 62.0 132 30.3
THA.LOC104812725 Tarenaya hassleriana HOM05D002949 ORTHO05D003151 4.9e-08 62.0 86 40.7
vmacro15865 Vaccinium macrocarpon HOM05D002949 ORTHO05D003151 4.9e-08 62.0 131 31.3
AL7G32540 Arabidopsis lyrata HOM05D002949 ORTHO05D003151 6.5e-08 61.6 107 32.7
C01p15440 Brassica napus HOM05D002949 ORTHO05D003151 6.5e-08 61.6 104 35.6
CARHR051300 Cardamine hirsuta HOM05D002949 ORTHO05D003151 6.5e-08 61.6 89 34.8
Phvul.006G192100 Phaseolus vulgaris HOM05D002949 ORTHO05D003151 6.5e-08 61.6 113 34.5
SalBow8G4484 Salvia bowleyana HOM05D002949 ORTHO05D003151 6.5e-08 61.6 112 33.0
Sp2g03160 Schrenkiella parvula HOM05D002949 ORTHO05D003151 6.5e-08 61.6 99 34.3
Ah.09g236130 Amaranthus hybridus HOM05D002949 ORTHO05D003151 8.4e-08 61.2 105 36.2
BcaNung02793 Brassica carinata HOM05D002949 ORTHO05D003151 8.4e-08 61.2 104 34.6
Nitab4.5_0005936g0030 Nicotiana tabacum HOM05D002949 ORTHO05D003151 8.4e-08 61.2 128 32.8
Sopen03g002650 Solanum pennellii HOM05D002949 ORTHO05D003151 1.1e-07 60.8 132 29.5
CARHR011490 Cardamine hirsuta HOM05D002949 ORTHO05D003151 1.4e-07 60.5 100 34.0
Solyc02g079150.2 Solanum lycopersicum HOM05D002949 ORTHO05D003151 1.4e-07 60.5 103 32.0
Actinidia05572 Actinidia chinensis HOM05D002949 ORTHO05D003151 1.9e-07 60.1 92 35.9
Carub.0007s1991 Capsella rubella HOM05D002949 ORTHO05D003151 1.9e-07 60.1 105 30.5
PSO210G1336 Papaver somniferum HOM05D002949 ORTHO05D003151 1.9e-07 60.1 105 29.5
AT4G21510 Arabidopsis thaliana HOM05D002949 ORTHO05D003151 2.5e-07 59.7 107 35.5
Sopen02g023950 Solanum pennellii HOM05D002949 ORTHO05D003151 2.5e-07 59.7 103 31.1
Solyc10g005480.3 Solanum lycopersicum HOM05D002949 ORTHO05D003151 3.2e-07 59.3 99 35.4
Sopen10g001460 Solanum pennellii HOM05D002949 ORTHO05D003151 3.2e-07 59.3 99 35.4
CAN.G289.27 Capsicum annuum HOM05D002949 ORTHO05D003151 4.2e-07 58.9 103 31.1
Nitab4.5_0003465g0090 Nicotiana tabacum HOM05D002949 ORTHO05D003151 4.2e-07 58.9 128 32.0
PSO832G3488 Papaver somniferum HOM05D002949 ORTHO05D003151 4.2e-07 58.9 133 28.6
VMungo0251G2283 Vigna mungo HOM05D002949 ORTHO05D003151 4.2e-07 58.9 102 35.3
A01p30160 Brassica napus HOM05D002949 ORTHO05D003151 5.5e-07 58.5 114 29.8
C01p38310 Brassica napus HOM05D002949 ORTHO05D003151 5.5e-07 58.5 114 29.8
Thhalv10026245m.g Eutrema salsugineum HOM05D002949 ORTHO05D003151 5.5e-07 58.5 96 34.4
Rhsim02G0119700 Rhododendron simsii HOM05D002949 ORTHO05D003151 5.5e-07 58.5 102 33.3
PGSC0003DMG400011249 Solanum tuberosum HOM05D002949 ORTHO05D003151 5.5e-07 58.5 98 34.7
ATR0693G092 Amborella trichopoda HOM05D002949 ORTHO05D003151 7.1e-07 58.2 69 46.4
AL2G14990 Arabidopsis lyrata HOM05D002949 ORTHO05D003151 7.1e-07 58.2 99 31.3
Lalb_Chr15g0090111 Lupinus albus HOM05D002949 ORTHO05D003151 7.1e-07 58.2 74 40.5
VMungo0540G1141 Vigna mungo HOM05D002949 ORTHO05D003151 7.1e-07 58.2 69 44.9
Carub.0002s0383 Capsella rubella HOM05D002949 ORTHO05D003151 9.3e-07 57.8 111 29.7
Glyma.07G190100 Glycine max HOM05D002949 ORTHO05D003151 9.3e-07 57.8 106 36.8
Nitab4.5_0000190g0100 Nicotiana tabacum HOM05D002949 ORTHO05D003151 9.3e-07 57.8 104 29.8
PGSC0003DMG400005038 Solanum tuberosum HOM05D002949 ORTHO05D003151 9.3e-07 57.8 131 29.0
AT1G61340 Arabidopsis thaliana HOM05D002949 ORTHO05D003151 1.2e-06 57.4 108 28.7
Carub.0001s1084 Capsella rubella HOM05D002949 ORTHO05D003151 1.2e-06 57.4 109 30.3
CAN.G424.14 Capsicum annuum HOM05D002949 ORTHO05D003151 1.6e-06 57.0 103 31.1
Nitab4.5_0012269g0020 Nicotiana tabacum HOM05D002949 ORTHO05D003151 1.6e-06 57.0 99 33.3
Oeu059554.1 Olea europaea HOM05D002949 ORTHO05D003151 1.6e-06 57.0 97 35.1
Thhalv10023716m.g Eutrema salsugineum HOM05D002949 ORTHO05D003151 2.1e-06 56.6 80 33.8
Nitab4.5_0009994g0030 Nicotiana tabacum HOM05D002949 ORTHO05D003151 2.1e-06 56.6 104 29.8
Peaxi162Scf00083g00012 Petunia axillaris HOM05D002949 ORTHO05D003151 2.1e-06 56.6 103 30.1
SGA_v2.0_scaffold739G53543 Striga asiatica HOM05D002949 ORTHO05D003151 2.1e-06 56.6 100 35.0
BcaNung04468 Brassica carinata HOM05D002949 ORTHO05D003151 3.5e-06 55.8 96 30.2
C04p27250 Brassica napus HOM05D002949 ORTHO05D003151 3.5e-06 55.8 96 34.4
C05p09520 Brassica napus HOM05D002949 ORTHO05D003151 3.5e-06 55.8 96 30.2
BolC5t29694H Brassica oleracea HOM05D002949 ORTHO05D003151 3.5e-06 55.8 96 30.2
CAN.G132.15 Capsicum annuum HOM05D002949 ORTHO05D003151 3.5e-06 55.8 98 33.7
Thhalv10009722m.g Eutrema salsugineum HOM05D002949 ORTHO05D003151 3.5e-06 55.8 98 34.7
Glyma.08G058900 Glycine max HOM05D002949 ORTHO05D003151 3.5e-06 55.8 62 48.4
Nn1g06760 Nelumbo nucifera HOM05D002949 ORTHO05D003151 4.6e-06 55.5 90 34.4
arahy.Tifrunner.gnm1.ann1.E8KCWE Arachis hypogaea HOM05D002949 ORTHO05D003151 6.0e-06 55.1 62 43.5
BcaC02g10579 Brassica carinata HOM05D002949 ORTHO05D003151 6.0e-06 55.1 96 34.4
A06p07910 Brassica napus HOM05D002949 ORTHO05D003151 6.0e-06 55.1 96 30.2
BraA06t23991Z Brassica rapa HOM05D002949 ORTHO05D003151 6.0e-06 55.1 96 30.2
BcaC06g31841 Brassica carinata HOM05D002949 ORTHO05D003151 7.9e-06 54.7 97 34.0
BolC4t24257H Brassica oleracea HOM05D002949 ORTHO05D003151 7.9e-06 54.7 90 35.6


User provided reference genes

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