Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 6.7e-227 790.4 423 100.0
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.5e-133 479.6 281 80.4
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.5e-130 470.3 282 77.7
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.4e-130 469.2 283 77.0
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 4.5e-130 468.8 280 75.7
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 4.5e-130 468.8 220 99.1
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 5.9e-130 468.4 282 77.3
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.9e-130 468.4 283 75.3
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.3e-129 467.2 289 75.8
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 2.9e-129 466.1 280 75.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.8e-129 465.7 281 75.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 5.0e-129 465.3 281 75.1
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 6.5e-129 464.9 277 77.6
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.6e-127 460.3 283 76.0
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 3.6e-127 459.1 274 76.6
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.7e-127 458.8 283 75.3
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 6.1e-127 458.4 280 75.0
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 7.9e-127 458.0 281 76.2
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.4e-126 457.2 281 75.1
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.4e-126 457.2 281 75.1
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.8e-126 456.8 282 74.8
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.8e-126 456.8 282 73.4
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 2.3e-126 456.4 283 73.1
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 3.0e-126 456.1 283 75.6
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 3.9e-126 455.7 280 75.0
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 5.1e-126 455.3 280 74.3
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 1.1e-125 454.1 281 74.7
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 4.4e-125 452.2 275 74.9
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 5.7e-125 451.8 284 73.9
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 7.4e-125 451.4 297 69.7
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.8e-124 448.7 283 73.5
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 8.2e-124 448.0 277 72.6
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 1.1e-123 447.6 285 74.7
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.1e-123 447.6 280 73.2
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.4e-123 446.4 280 73.9
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.1e-123 446.0 279 73.5
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 9.1e-123 444.5 282 73.0
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.0e-122 443.4 257 78.6
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 2.6e-122 443.0 292 70.2
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.4e-122 442.6 282 72.0
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 3.4e-122 442.6 257 77.4
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 3.4e-122 442.6 260 78.1
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 5.9e-122 441.8 292 70.9
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 5.9e-122 441.8 257 78.2
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.9e-122 441.8 282 71.6
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.0e-121 441.0 262 76.3
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.3e-121 440.7 302 68.5
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.3e-121 440.7 287 71.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.7e-121 440.3 298 69.5
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.2e-121 439.9 277 72.9
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.9e-121 439.5 275 72.4
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.9e-121 439.5 280 72.9
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.9e-121 439.5 266 74.4
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 3.8e-121 439.1 289 72.7
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 3.8e-121 439.1 271 73.1
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.8e-121 439.1 287 70.7
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 5.0e-121 438.7 301 68.4
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 5.0e-121 438.7 285 71.9
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 6.5e-121 438.3 260 75.4
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 8.5e-121 438.0 265 75.8
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.1e-120 437.6 262 76.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.1e-120 437.6 263 75.3
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.9e-120 436.8 290 71.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.9e-120 436.8 301 68.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.5e-120 436.4 256 77.7
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 4.2e-120 435.6 276 71.0
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 4.2e-120 435.6 276 73.2
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 5.5e-120 435.3 298 70.1
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 9.4e-120 434.5 264 75.8
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 9.4e-120 434.5 263 74.1
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 9.4e-120 434.5 278 71.6
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.2e-119 434.1 276 71.0
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 1.6e-119 433.7 275 71.6
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.6e-119 433.7 277 71.1
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.6e-119 433.7 257 76.7
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 2.1e-119 433.3 275 71.3
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.7e-119 433.0 278 69.8
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 2.7e-119 433.0 257 75.9
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 3.6e-119 432.6 257 75.9
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 1.0e-118 431.0 257 75.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.4e-118 430.6 278 70.5
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.4e-118 430.6 267 74.9
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 1.8e-118 430.3 276 71.4
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 2.3e-118 429.9 267 75.3
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 5.2e-118 428.7 257 76.7
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 6.7e-118 428.3 256 76.2
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.1e-117 427.6 289 68.9
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.0e-117 426.8 286 69.6
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.6e-117 426.4 260 74.6
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 7.4e-117 424.9 262 76.0
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 7.4e-117 424.9 255 74.5
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 9.7e-117 424.5 257 74.3
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 9.7e-117 424.5 255 76.5
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.2e-116 423.3 290 71.0
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.2e-116 423.3 289 69.2
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.2e-116 423.3 342 62.6
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 4.8e-116 422.2 259 74.5
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 7.0e-115 418.3 277 70.4
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.0e-113 414.5 263 73.0
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.2e-113 413.3 302 67.9
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.8e-113 412.5 252 73.0
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 5.0e-113 412.1 253 72.7
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 5.0e-113 412.1 224 82.6
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 5.5e-112 408.7 302 67.2
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 2.1e-111 406.8 233 78.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.6e-111 406.0 272 69.5
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 4.0e-110 402.5 292 65.8
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.3e-109 399.4 275 69.1
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.7e-109 398.7 284 66.9
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.3e-108 397.5 249 73.5
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 3.1e-107 392.9 331 58.9
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 3.5e-106 389.4 238 75.2
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.9e-105 386.3 283 67.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.9e-104 383.6 282 63.1
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.7e-98 363.2 305 56.1
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.0e-97 359.0 303 56.1
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 2.5e-96 356.7 207 75.8
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 3.0e-94 349.7 310 53.2
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.5e-93 347.4 269 65.1
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.6e-87 327.4 276 59.4
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.0e-85 320.5 197 76.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 5.8e-85 318.9 274 56.6
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.3e-81 307.0 181 76.2
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.1e-80 304.7 173 79.8
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 1.1e-80 304.7 173 79.8
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.5e-80 304.3 270 55.9
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 4.7e-79 299.3 173 78.0
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 1.1e-78 298.1 177 79.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.2e-77 294.7 271 55.4
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 9.8e-77 291.6 179 74.3
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 4.9e-76 289.3 270 56.3
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-74 284.6 205 67.3
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.6e-74 282.7 173 73.4
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.9e-68 263.5 204 64.7
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.9e-68 262.7 282 50.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.4e-67 260.4 242 52.9
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 7.8e-66 255.4 232 52.6
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.7e-60 237.7 250 47.2
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.3e-57 227.3 191 58.1
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 2.5e-56 223.8 203 57.6
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.4e-54 218.0 141 74.5
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.8e-54 217.6 137 76.6
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.4e-53 213.4 151 70.9
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 5.8e-53 212.6 183 55.2
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 1.6e-47 194.5 228 47.4
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 4.8e-47 193.0 222 45.5
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 6.9e-46 189.1 251 43.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 8.4e-44 182.2 170 52.9
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 4.0e-38 163.3 128 57.8
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 6.9e-38 162.5 124 57.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.5e-32 144.8 83 71.1
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.2e-27 126.7 79 69.6
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 3.7e-15 87.0 61 65.6
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-09 68.6 47 61.7
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-09 68.6 47 61.7
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 5.1e-09 66.6 146 32.9
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 1.3e-07 62.0 191 30.9
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 2.4e-06 57.8 86 40.7
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 5.3e-06 56.6 202 29.2
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 7.0e-06 56.2 196 30.1
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 9.1e-06 55.8 179 31.3
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 9.1e-06 55.8 229 28.4


User provided reference genes

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