Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012258 Vanilla planifolia HOM05D003582 ORTHO05D431925 1.3e-148 529.6 262 100.0
HPP92_012242 Vanilla planifolia HOM05D003582 ORTHO05D004789 2.2e-66 256.5 223 66.4
HPP92_012207 Vanilla planifolia HOM05D003582 ORTHO05D004789 8.5e-63 244.6 219 65.3
Gohir.A07G180200 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.2e-43 181.0 184 53.3
Gohir.D07G187100 Gossypium hirsutum HOM05D003582 ORTHO05D004789 6.4e-42 175.3 211 47.4
Gohir.D11G165800 Gossypium hirsutum HOM05D003582 ORTHO05D004789 6.4e-42 175.3 202 49.5
Gorai.001G207700 Gossypium raimondii HOM05D003582 ORTHO05D004789 6.4e-42 175.3 211 47.4
Gorai.007G176800 Gossypium raimondii HOM05D003582 ORTHO05D004789 6.4e-42 175.3 202 49.5
Gohir.A11G159700 Gossypium hirsutum HOM05D003582 ORTHO05D004789 1.1e-41 174.5 202 49.0
TWI32G0037 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 3.2e-41 172.9 211 47.9
Thecc.04G104800 Theobroma cacao HOM05D003582 ORTHO05D004789 1.6e-40 170.6 211 46.9
CSS0004005 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 3.5e-40 169.5 209 46.9
CSS0033422 Camellia sinensis var. sinensis HOM05D003582 ORTHO05D004789 3.5e-40 169.5 209 46.9
Ciclev10011357m.g Citrus clementina HOM05D003582 ORTHO05D004789 3.5e-40 169.5 208 47.6
Duzib133G0617 Durio zibethinus HOM05D003582 ORTHO05D004789 3.5e-40 169.5 211 46.9
Nn4g23497 Nelumbo nucifera HOM05D003582 ORTHO05D004789 3.5e-40 169.5 221 46.6
Oeu004424.1 Olea europaea HOM05D003582 ORTHO05D004789 3.5e-40 169.5 209 47.4
PGR042G1977 Punica granatum HOM05D003582 ORTHO05D004789 1.0e-39 167.9 229 48.0
THA.LOC104827143 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 1.0e-39 167.9 209 47.4
Duzib138G0134 Durio zibethinus HOM05D003582 ORTHO05D004789 1.3e-39 167.5 211 46.4
THA.LOC104802987 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 1.7e-39 167.2 210 46.2
BcaC09g47692 Brassica carinata HOM05D003582 ORTHO05D004789 2.3e-39 166.8 198 47.5
BolC1t05913H Brassica oleracea HOM05D003582 ORTHO05D004789 2.3e-39 166.8 198 47.5
Dinv33857 Davidia involucrata HOM05D003582 ORTHO05D004789 2.3e-39 166.8 208 48.1
Oeu021205.1 Olea europaea HOM05D003582 ORTHO05D004789 2.3e-39 166.8 209 45.9
BraSC141t45620Z Brassica rapa HOM05D003582 ORTHO05D004789 3.0e-39 166.4 197 48.7
Carub.0003s0143 Capsella rubella HOM05D003582 ORTHO05D004789 3.0e-39 166.4 205 45.9
AT3G02320 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 3.9e-39 166.0 205 47.3
Cc00_g14200 Coffea canephora HOM05D003582 ORTHO05D004789 3.9e-39 166.0 209 46.9
AL3G11610 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 5.0e-39 165.6 205 45.9
Ah.16g101080 Amaranthus hybridus HOM05D003582 ORTHO05D004789 6.6e-39 165.2 214 49.1
Cpa.g.sc14.212 Carica papaya HOM05D003582 ORTHO05D004789 8.6e-39 164.9 212 44.3
HanXRQChr09g0264801 Helianthus annuus HOM05D003582 ORTHO05D004789 1.1e-38 164.5 193 49.7
Atru.chr8.571 Acer truncatum HOM05D003582 ORTHO05D004789 1.5e-38 164.1 210 46.2
TAR629G1978 Trochodendron aralioides HOM05D003582 ORTHO05D004789 1.5e-38 164.1 209 46.4
Lsat_1_v5_gn_2_89661 Lactuca sativa HOM05D003582 ORTHO05D004789 1.9e-38 163.7 196 48.5
Hund13680 Selenicereus undatus HOM05D003582 ORTHO05D004789 1.9e-38 163.7 213 46.9
A10p23210 Brassica napus HOM05D003582 ORTHO05D004789 2.5e-38 163.3 200 49.5
BraA10t44389Z Brassica rapa HOM05D003582 ORTHO05D004789 2.5e-38 163.3 200 49.5
Sc10g0000640 Simmondsia chinensis HOM05D003582 ORTHO05D004789 2.5e-38 163.3 214 45.8
TWI60G0725 Tripterygium wilfordii HOM05D003582 ORTHO05D004789 2.5e-38 163.3 212 45.3
TAR371G0699 Trochodendron aralioides HOM05D003582 ORTHO05D004789 2.5e-38 163.3 209 46.9
MD09G1073500 Malus domestica HOM05D003582 ORTHO05D004789 3.3e-38 162.9 212 45.8
BcaC09g47691 Brassica carinata HOM05D003582 ORTHO05D004789 4.3e-38 162.5 194 47.4
CDE04G3698 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 4.3e-38 162.5 207 46.4
AUR62023166 Chenopodium quinoa HOM05D003582 ORTHO05D004789 7.3e-38 161.8 228 43.9
BraA03t10061Z Brassica rapa HOM05D003582 ORTHO05D004789 9.5e-38 161.4 203 48.3
HanXRQChr14g0452431 Helianthus annuus HOM05D003582 ORTHO05D004789 9.5e-38 161.4 206 47.6
Aqoxy3G01120 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 1.6e-37 160.6 212 46.7
ECA232G0785 Erigeron canadensis HOM05D003582 ORTHO05D004789 1.6e-37 160.6 208 46.2
Eucgr.J01408 Eucalyptus grandis HOM05D003582 ORTHO05D004789 1.6e-37 160.6 211 46.0
Nn3g17508 Nelumbo nucifera HOM05D003582 ORTHO05D004789 1.6e-37 160.6 210 45.2
Nn3g17509 Nelumbo nucifera HOM05D003582 ORTHO05D004789 1.6e-37 160.6 210 45.2
Sp3g01380 Schrenkiella parvula HOM05D003582 ORTHO05D004789 1.6e-37 160.6 201 45.3
CARHR076300 Cardamine hirsuta HOM05D003582 ORTHO05D004789 2.1e-37 160.2 201 45.3
ECA238G0900 Erigeron canadensis HOM05D003582 ORTHO05D004789 2.1e-37 160.2 206 47.1
SGA_v2.0_scaffold4G02360 Striga asiatica HOM05D003582 ORTHO05D004789 2.8e-37 159.8 209 45.0
CANSAT64G2522 Cannabis sativa HOM05D003582 ORTHO05D004789 3.6e-37 159.5 214 44.9
Aa31LG5G12860 Aethionema arabicum HOM05D003582 ORTHO05D004789 4.7e-37 159.1 206 44.7
CDE07G0251 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 4.7e-37 159.1 203 45.3
AUR62009488 Chenopodium quinoa HOM05D003582 ORTHO05D004789 4.7e-37 159.1 226 43.4
Migut.H00593 Erythranthe guttata HOM05D003582 ORTHO05D004789 4.7e-37 159.1 209 45.5
Nitab4.5_0005120g0010 Nicotiana tabacum HOM05D003582 ORTHO05D004789 4.7e-37 159.1 207 45.4
Aa31LG11G13760 Aethionema arabicum HOM05D003582 ORTHO05D004789 6.2e-37 158.7 198 45.5
DCAR_011024 Daucus carota HOM05D003582 ORTHO05D004789 6.2e-37 158.7 152 57.2
arahy.Tifrunner.gnm1.ann1.90NIGC Arachis hypogaea HOM05D003582 ORTHO05D004789 8.0e-37 158.3 225 43.1
arahy.Tifrunner.gnm1.ann1.YPLH9H Arachis hypogaea HOM05D003582 ORTHO05D004789 8.0e-37 158.3 225 43.1
BcaB01g05025 Brassica carinata HOM05D003582 ORTHO05D004789 8.0e-37 158.3 203 46.3
BcaB08g36862 Brassica carinata HOM05D003582 ORTHO05D004789 8.0e-37 158.3 206 46.1
C03p08560 Brassica napus HOM05D003582 ORTHO05D004789 8.0e-37 158.3 203 46.3
BolC3t13361H Brassica oleracea HOM05D003582 ORTHO05D004789 8.0e-37 158.3 203 46.3
Ca_20768_v3 Cicer arietinum L. HOM05D003582 ORTHO05D004789 8.0e-37 158.3 224 42.9
Hma1.2p1_0069F.1_g037480 Hydrangea macrophylla HOM05D003582 ORTHO05D004789 8.0e-37 158.3 210 46.2
MD17G1065000 Malus domestica HOM05D003582 ORTHO05D004789 8.0e-37 158.3 212 44.3
Prupe.3G249800 Prunus persica HOM05D003582 ORTHO05D004789 8.0e-37 158.3 212 45.3
Actinidia26267 Actinidia chinensis HOM05D003582 ORTHO05D004789 1.1e-36 157.9 209 45.0
EL10Ac2g04447 Beta vulgaris HOM05D003582 ORTHO05D004789 1.1e-36 157.9 214 46.3
A03p07370 Brassica napus HOM05D003582 ORTHO05D004789 1.1e-36 157.9 203 45.8
PSO017G5930 Papaver somniferum HOM05D003582 ORTHO05D004789 1.1e-36 157.9 206 45.6
Sp6g28300 Schrenkiella parvula HOM05D003582 ORTHO05D004789 1.1e-36 157.9 198 47.5
BcaC04g18934 Brassica carinata HOM05D003582 ORTHO05D004789 1.4e-36 157.5 206 45.6
BolC9t58968H Brassica oleracea HOM05D003582 ORTHO05D004789 1.4e-36 157.5 206 45.6
Carub.0006s1397 Capsella rubella HOM05D003582 ORTHO05D004789 1.4e-36 157.5 200 46.0
Manes.01G103000 Manihot esculenta HOM05D003582 ORTHO05D004789 1.4e-36 157.5 238 41.6
C09p61260 Brassica napus HOM05D003582 ORTHO05D004789 1.8e-36 157.1 206 45.1
CAN.G497.77 Capsicum annuum HOM05D003582 ORTHO05D004789 1.8e-36 157.1 215 42.3
Lalb_Chr02g0158711 Lupinus albus HOM05D003582 ORTHO05D004789 1.8e-36 157.1 240 41.7
Nitab4.5_0001434g0060 Nicotiana tabacum HOM05D003582 ORTHO05D004789 1.8e-36 157.1 209 44.0
Potri.004G117900 Populus trichocarpa HOM05D003582 ORTHO05D004789 1.8e-36 157.1 213 45.1
Potri.017G099200 Populus trichocarpa HOM05D003582 ORTHO05D004789 1.8e-36 157.1 213 45.1
vmacro18132 Vaccinium macrocarpon HOM05D003582 ORTHO05D004789 1.8e-36 157.1 209 44.5
Migut.O00385 Erythranthe guttata HOM05D003582 ORTHO05D004789 2.3e-36 156.8 211 44.5
GSVIVG01036556001 Vitis vinifera HOM05D003582 ORTHO05D004789 2.3e-36 156.8 227 43.6
Sabra17G0085700 Salix brachista HOM05D003582 ORTHO05D004789 4.0e-36 156.0 213 45.1
CDE07G0024 Ceratophyllum demersum HOM05D003582 ORTHO05D004789 5.2e-36 155.6 206 43.7
HanXRQChr15g0489031 Helianthus annuus HOM05D003582 ORTHO05D004789 5.2e-36 155.6 197 46.7
Sabra04G0071000 Salix brachista HOM05D003582 ORTHO05D004789 5.2e-36 155.6 233 42.9
Lj4A122T65 Lonicera japonica HOM05D003582 ORTHO05D004789 6.8e-36 155.2 197 47.2
PSO478G3099 Papaver somniferum HOM05D003582 ORTHO05D004789 8.9e-36 154.8 206 45.1
Rhsim08G0076400 Rhododendron simsii HOM05D003582 ORTHO05D004789 8.9e-36 154.8 209 44.0
RcHm_v2.0_Chr2g0165001 Rosa chinensis HOM05D003582 ORTHO05D004789 8.9e-36 154.8 211 43.6
Lj1g0000491 Lotus japonicus HOM05D003582 ORTHO05D004789 1.2e-35 154.5 222 43.7
SGA_v2.0_scaffold52G19103 Striga asiatica HOM05D003582 ORTHO05D004789 1.5e-35 154.1 212 45.8
CARHR197510 Cardamine hirsuta HOM05D003582 ORTHO05D004789 2.0e-35 153.7 205 44.9
Thhalv10013036m.g Eutrema salsugineum HOM05D003582 ORTHO05D004789 2.0e-35 153.7 205 45.4
Phvul.004G041500 Phaseolus vulgaris HOM05D003582 ORTHO05D004789 2.0e-35 153.7 227 43.2
Aqoxy7G03254 Aquilegia oxysepala HOM05D003582 ORTHO05D004789 2.6e-35 153.3 213 45.5
arahy.Tifrunner.gnm1.ann1.936LCP Arachis hypogaea HOM05D003582 ORTHO05D004789 2.6e-35 153.3 227 43.2
Sed0004528 Sechium edule HOM05D003582 ORTHO05D004789 2.6e-35 153.3 213 43.7
VMungo0464G0741 Vigna mungo HOM05D003582 ORTHO05D004789 2.6e-35 153.3 229 42.8
TPR.G15956 Trifolium pratense HOM05D003582 ORTHO05D004789 3.4e-35 152.9 224 43.8
AL6G26670 Arabidopsis lyrata HOM05D003582 ORTHO05D004789 4.4e-35 152.5 205 44.4
arahy.Tifrunner.gnm1.ann1.DBFW6U Arachis hypogaea HOM05D001801 ORTHO05D001739 4.4e-35 152.5 225 42.7
MELO3C022046.2 Cucumis melo HOM05D003582 ORTHO05D004789 4.4e-35 152.5 213 44.1
DCAR_025450 Daucus carota HOM05D003582 ORTHO05D004789 4.4e-35 152.5 232 41.8
AT5G15810 Arabidopsis thaliana HOM05D003582 ORTHO05D004789 5.8e-35 152.1 205 43.4
CsaV3_5G038660 Cucumis sativus L. HOM05D003582 ORTHO05D004789 7.5e-35 151.8 213 42.7
Zm00001eb061890 Zea mays HOM05D003582 ORTHO05D004789 7.5e-35 151.8 203 43.8
ClCG11G004930 Citrullus lanatus HOM05D003582 ORTHO05D004789 9.8e-35 151.4 213 42.7
Ah.10g038150 Amaranthus hybridus HOM05D003582 ORTHO05D004789 1.7e-34 150.6 212 43.9
Psat1g066040 Pisum sativum HOM05D003582 ORTHO05D004789 1.7e-34 150.6 222 41.9
unitig_0.g556 Utricularia gibba HOM05D003582 ORTHO05D004789 1.7e-34 150.6 205 44.9
Medtr6g015885 Medicago truncatula HOM05D003582 ORTHO05D004789 2.2e-34 150.2 224 42.4
Zm00001eb230770 Zea mays HOM05D003582 ORTHO05D004789 2.2e-34 150.2 169 49.7
Lj2g0024434 Lotus japonicus HOM05D003582 ORTHO05D004789 2.9e-34 149.8 225 41.8
Glyma.13G053100 Glycine max HOM05D003582 ORTHO05D004789 3.7e-34 149.4 227 42.3
SalBow1G0251 Salvia bowleyana HOM05D003582 ORTHO05D004789 3.7e-34 149.4 206 45.1
Sed0002547 Sechium edule HOM05D003582 ORTHO05D004789 3.7e-34 149.4 213 44.1
CiPaw.03G083900 Carya illinoinensis HOM05D003582 ORTHO05D004789 4.9e-34 149.1 211 44.1
Glyma.19G033700 Glycine max HOM05D003582 ORTHO05D004789 6.4e-34 148.7 227 41.4
Nitab4.5_0000154g0240 Nicotiana tabacum HOM05D003582 ORTHO05D004789 6.4e-34 148.7 202 42.6
MBI16_g37884_MAGBIO Magnolia biondii HOM05D003582 ORTHO05D004789 1.4e-33 147.5 105 68.6
Manes.02G058750 Manihot esculenta HOM05D003582 ORTHO05D004789 1.4e-33 147.5 106 67.9
ATR0827G075 Amborella trichopoda HOM05D003582 ORTHO05D004789 2.4e-33 146.7 205 44.4
Dinv34912 Davidia involucrata HOM05D003582 ORTHO05D004789 1.2e-32 144.4 90 73.3
QL02p066091 Quercus lobata HOM05D003582 ORTHO05D004789 1.2e-32 144.4 208 43.3
Haze_14390 Corylus avellana HOM05D003582 ORTHO05D004789 2.7e-32 143.3 106 66.0
Actinidia17602 Actinidia chinensis HOM05D003582 ORTHO05D004789 3.5e-32 142.9 108 64.8
Mapoly0103s0023 Marchantia polymorpha HOM05D003582 ORTHO05D004789 3.5e-32 142.9 205 42.9
FvH4_6g46450 Fragaria vesca HOM05D003582 ORTHO05D004789 7.8e-32 141.7 106 65.1
FAN14G2787 Fragaria x ananassa HOM05D003582 ORTHO05D004789 7.8e-32 141.7 106 65.1
FAN02G0181 Fragaria x ananassa HOM05D003582 ORTHO05D004789 1.0e-31 141.4 107 63.6
FAN05G2033 Fragaria x ananassa HOM05D003582 ORTHO05D004789 1.0e-31 141.4 106 64.2
BNapus_Darmor_BZH_scaffold_208p00140 Brassica napus HOM05D003582 ORTHO05D004789 1.7e-31 140.6 191 43.5
THA.LOC104823883 Tarenaya hassleriana HOM05D003582 ORTHO05D004789 3.0e-31 139.8 212 41.5
Cfa007687 Carpinus fangiana HOM05D003582 ORTHO05D004789 3.9e-31 139.4 87 72.4
SEGI_16900 Sequoiadendron giganteum HOM05D003582 ORTHO05D004789 3.9e-31 139.4 120 60.0
Solyc02g089175.2 Solanum lycopersicum HOM05D003582 ORTHO05D004789 3.9e-31 139.4 90 71.1
Sopen02g033970 Solanum pennellii HOM05D003582 ORTHO05D004789 3.9e-31 139.4 90 71.1
PGSC0003DMG400001466 Solanum tuberosum HOM05D003582 ORTHO05D004789 3.9e-31 139.4 90 71.1
arahy.Tifrunner.gnm1.ann1.3TK0C1 Arachis hypogaea HOM05D003582 ORTHO05D004789 5.1e-31 139.0 252 38.5
FAN09G2080 Fragaria x ananassa HOM05D003582 ORTHO05D004789 4.3e-30 136.0 119 57.1
Peaxi162Scf01619g00009 Petunia axillaris HOM05D003582 ORTHO05D004789 5.6e-30 135.6 90 68.9
PGSC0003DMG401007649 Solanum tuberosum HOM05D003582 ORTHO05D004789 5.6e-30 135.6 90 68.9
Os03g0786700 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 1.6e-29 134.0 107 61.7
Os10g0357800 Oryza sativa ssp. japonica HOM05D003582 ORTHO05D004789 6.2e-29 132.1 187 44.4
SMO203G0237 Selaginella moellendorffii HOM05D003582 ORTHO05D004789 6.2e-29 132.1 146 49.3
Pp3c16_12880 Physcomitrium patens HOM05D003582 ORTHO05D004789 1.7e-26 124.0 86 62.8
Nitab4.5_0006516g0040 Nicotiana tabacum HOM05D003582 ORTHO05D004789 2.2e-26 123.6 207 40.6
CBR_g3723 Chara braunii HOM05D003582 ORTHO05D004789 2.4e-25 120.2 101 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1885 Anthoceros agrestis HOM05D003582 ORTHO05D004789 2.1e-24 117.1 246 37.4
HPP92_012243 Vanilla planifolia HOM05D003582 ORTHO05D429714 2.1e-24 117.1 57 100.0
HPP92_012206 Vanilla planifolia HOM05D003582 ORTHO05D431105 6.6e-23 112.1 57 96.5
Cre10.g422000 Chlamydomonas reinhardtii HOM05D003582 ORTHO05D004789 1.8e-20 104.0 150 39.3
PRCOL_00005295 Prasinoderma coloniale HOM05D003582 ORTHO05D004789 1.2e-16 91.3 172 35.5
MCO10G029 Micromonas commoda HOM05D003582 ORTHO05D004789 3.0e-15 86.7 203 30.5
Hma1.2p1_1502F.1_g287410 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 3.3e-06 56.6 106 39.6
Hma1.2p1_2026F.1_g311626 Hydrangea macrophylla HOM05D003582 ORTHO05D022453 3.3e-06 56.6 106 39.6


User provided reference genes

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