Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012241 Vanilla planifolia HOM05D029139 ORTHO05D001650 1.1e-54 217.6 257 100.0
HPP92_012208 Vanilla planifolia HOM05D029139 ORTHO05D001650 2.0e-48 196.8 257 95.3
HPP92_012240 Vanilla planifolia HOM05D029139 ORTHO05D051546 1.6e-21 107.5 79 65.8
Zm00001eb327160 Zea mays HOM05D001797 ORTHO05D001650 6.5e-15 85.5 80 50.0
Os03g0412300 Oryza sativa ssp. japonica HOM05D001797 ORTHO05D001650 4.2e-14 82.8 76 48.7
Zm00001eb108730 Zea mays HOM05D037261 ORTHO05D001650 3.6e-13 79.7 85 44.7
Os07g0682000 Oryza sativa ssp. japonica HOM05D053677 ORTHO05D050076 1.0e-12 78.2 75 50.7
Nn1g07498 Nelumbo nucifera HOM05D001797 ORTHO05D001650 2.3e-12 77.0 85 45.9
Zm00001eb166490 Zea mays HOM05D001797 ORTHO05D001650 8.8e-12 75.1 76 44.7
Os11g0629100 Oryza sativa ssp. japonica HOM05D001797 ORTHO05D001650 1.1e-11 74.7 76 46.1
Zm00001eb057470 Zea mays HOM05D013577 ORTHO05D001650 5.7e-11 72.4 72 41.7
Zm00001eb214820 Zea mays HOM05D013577 ORTHO05D001650 7.4e-11 72.0 72 43.1
Sed0007136 Sechium edule HOM05D001797 ORTHO05D001650 2.2e-10 70.5 81 43.2
TAR624G1419 Trochodendron aralioides HOM05D001797 ORTHO05D001650 2.2e-10 70.5 81 44.4
HPP92_024938 Vanilla planifolia HOM05D003992 ORTHO05D001650 2.2e-10 70.5 58 56.9
PSO541G2121 Papaver somniferum HOM05D001797 ORTHO05D001650 2.8e-10 70.1 84 45.2
HPP92_024930 Vanilla planifolia HOM05D003992 ORTHO05D004329 2.8e-10 70.1 67 47.8
TAR624G0736 Trochodendron aralioides HOM05D001797 ORTHO05D001650 3.7e-10 69.7 81 45.7
Os03g0751600 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D001650 4.8e-10 69.3 78 42.3
Os04g0401000 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D030350 6.3e-10 68.9 80 41.2
ClCG01G011010 Citrullus lanatus HOM05D001797 ORTHO05D001650 8.2e-10 68.6 89 40.4
TAR624G0994 Trochodendron aralioides HOM05D001797 ORTHO05D001650 8.2e-10 68.6 83 44.6
PSO675G8410 Papaver somniferum HOM05D001797 ORTHO05D001650 1.8e-09 67.4 82 43.9
Zm00001eb019860 Zea mays HOM05D001797 ORTHO05D001650 1.8e-09 67.4 72 43.1
Zm00001eb216700 Zea mays HOM05D000737 ORTHO05D015469 2.4e-09 67.0 76 47.4
MELO3C026077.2 Cucumis melo HOM05D001797 ORTHO05D001650 4.1e-09 66.2 86 38.4
MBI19_g11108_MAGBIO Magnolia biondii HOM05D001797 ORTHO05D001650 4.1e-09 66.2 86 46.5
MBI19_g41118_MAGBIO Magnolia biondii HOM05D001797 ORTHO05D001650 4.1e-09 66.2 84 46.4
RhsimUnG0175900 Rhododendron simsii HOM05D001797 ORTHO05D001650 4.1e-09 66.2 86 41.9
TPR.G5982 Trifolium pratense HOM05D001797 ORTHO05D001650 4.1e-09 66.2 83 41.0
Zm00001eb421540 Zea mays HOM05D013577 ORTHO05D001650 5.3e-09 65.9 82 47.6
Cc03_g07690 Coffea canephora HOM05D001797 ORTHO05D001650 7.0e-09 65.5 85 41.2
Ca_20999_v3 Cicer arietinum L. HOM05D001797 ORTHO05D001650 9.1e-09 65.1 83 41.0
Os04g0401100 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D030350 9.1e-09 65.1 76 44.7
TAR375G1050 Trochodendron aralioides HOM05D001797 ORTHO05D001650 9.1e-09 65.1 86 43.0
TAR624G0157 Trochodendron aralioides HOM05D001797 ORTHO05D001650 9.1e-09 65.1 77 46.8
Os10g0207700 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D001650 1.2e-08 64.7 79 46.8
CsaV3_1G015440 Cucumis sativus L. HOM05D001797 ORTHO05D001650 1.6e-08 64.3 83 38.6
Actinidia01445 Actinidia chinensis HOM05D001797 ORTHO05D001650 2.6e-08 63.5 86 41.9
CDE04G1610 Ceratophyllum demersum HOM05D001797 ORTHO05D001650 2.6e-08 63.5 81 42.0
Cc00_g26060 Coffea canephora HOM05D001797 ORTHO05D001650 2.6e-08 63.5 88 40.9
DCAR_030844 Daucus carota HOM05D001797 ORTHO05D001650 2.6e-08 63.5 89 42.7
Solyc11g012680.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 2.6e-08 63.5 83 43.4
Sopen11g007410 Solanum pennellii HOM05D001797 ORTHO05D001650 2.6e-08 63.5 83 43.4
Duzib192G0521 Durio zibethinus HOM05D001797 ORTHO05D001650 3.5e-08 63.2 86 39.5
Rhsim13G0141800 Rhododendron simsii HOM05D001797 ORTHO05D001650 3.5e-08 63.2 84 40.5
SGA_v2.0_scaffold630G53285 Striga asiatica HOM05D001797 ORTHO05D001650 3.5e-08 63.2 86 41.9
MSTRG.16049 Avicennia marina HOM05D001797 ORTHO05D001650 4.5e-08 62.8 85 37.6
Medtr4g133900 Medicago truncatula HOM05D001797 ORTHO05D001650 4.5e-08 62.8 83 39.8
AUR62021820 Chenopodium quinoa HOM05D001797 ORTHO05D001650 5.9e-08 62.4 85 40.0
MBI19_g31739_MAGBIO Magnolia biondii HOM05D001797 ORTHO05D001650 5.9e-08 62.4 72 45.8
RhsimUnG0175400 Rhododendron simsii HOM05D001797 ORTHO05D001650 5.9e-08 62.4 85 38.8
Glyma.17G006300 Glycine max HOM05D001797 ORTHO05D001650 7.7e-08 62.0 88 40.9
Gohir.D06G162900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 1.0e-07 61.6 86 38.4
arahy.Tifrunner.gnm1.ann1.CMF379 Arachis hypogaea HOM05D001797 ORTHO05D001650 1.3e-07 61.2 85 42.4
arahy.Tifrunner.gnm1.ann1.Q4MEBS Arachis hypogaea HOM05D001797 ORTHO05D001650 1.3e-07 61.2 85 42.4
vmacro03617 Vaccinium macrocarpon HOM05D001797 ORTHO05D001650 1.3e-07 61.2 85 41.2
Aqoxy1G04251 Aquilegia oxysepala HOM05D001797 ORTHO05D001650 1.7e-07 60.8 77 44.2
CSS0000720 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.7e-07 60.8 88 40.9
Ciclev10017543m.g Citrus clementina HOM05D001797 ORTHO05D001650 1.7e-07 60.8 86 39.5
Dinv15346 Davidia involucrata HOM05D001797 ORTHO05D001650 1.7e-07 60.8 83 41.0
Potri.006G019200 Populus trichocarpa HOM05D001797 ORTHO05D001650 1.7e-07 60.8 87 35.6
Os07g0606900 Oryza sativa ssp. japonica HOM05D037261 ORTHO05D001650 2.2e-07 60.5 47 51.1
SGA_v2.0_scaffold7G03707 Striga asiatica HOM05D001797 ORTHO05D001650 2.2e-07 60.5 86 38.4
unitig_26.g10038 Utricularia gibba HOM05D001797 ORTHO05D001650 2.2e-07 60.5 82 40.2
Actinidia35737 Actinidia chinensis HOM05D001797 ORTHO05D001650 2.9e-07 60.1 83 41.0
Ah.14g087420 Amaranthus hybridus HOM05D001797 ORTHO05D001650 2.9e-07 60.1 84 39.3
Cc09_g08340 Coffea canephora HOM05D001797 ORTHO05D001650 2.9e-07 60.1 77 42.9
Migut.M01438 Erythranthe guttata HOM05D001797 ORTHO05D001650 2.9e-07 60.1 86 40.7
Gorai.010G190100 Gossypium raimondii HOM05D001797 ORTHO05D001650 2.9e-07 60.1 86 37.2
TWI38G0899 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 2.9e-07 60.1 82 36.6
Potri.016G006700 Populus trichocarpa HOM05D001797 ORTHO05D001650 5.0e-07 59.3 85 37.6
MSTRG.7137 Avicennia marina HOM05D001797 ORTHO05D001650 6.5e-07 58.9 90 40.0
CSS0036445 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 6.5e-07 58.9 85 40.0
Duzib192G0736 Durio zibethinus HOM05D001797 ORTHO05D001650 6.5e-07 58.9 79 38.0
Gohir.A06G156500 Gossypium hirsutum HOM05D001797 ORTHO05D001650 6.5e-07 58.9 86 37.2
TWI38G0564 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 6.5e-07 58.9 85 34.1
Aqoxy4G01882 Aquilegia oxysepala HOM05D001797 ORTHO05D001650 8.5e-07 58.5 88 39.8
Cc09_g00440 Coffea canephora HOM05D001797 ORTHO05D001650 8.5e-07 58.5 85 40.0
FAN25G0318 Fragaria x ananassa HOM05D001797 ORTHO05D001650 8.5e-07 58.5 82 37.8
MSTRG.7138 Avicennia marina HOM05D001797 ORTHO05D001650 1.1e-06 58.2 85 38.8
Cc09_g00470 Coffea canephora HOM05D001797 ORTHO05D001650 1.1e-06 58.2 88 39.8
VMungo1215G2802 Vigna mungo HOM05D001797 ORTHO05D001650 1.1e-06 58.2 83 39.8
Manes.09G077799 Manihot esculenta HOM05D001797 ORTHO05D001650 1.5e-06 57.8 83 36.1
Sopen05g032700 Solanum pennellii HOM05D001797 ORTHO05D001650 1.5e-06 57.8 80 41.2
Solyc05g054210.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 1.9e-06 57.4 80 41.2
TWI38G0363 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 1.9e-06 57.4 85 34.1
Nitab4.5_0002478g0050 Nicotiana tabacum HOM05D001797 ORTHO05D001650 2.5e-06 57.0 83 41.0
PGR042G3950 Punica granatum HOM05D001797 ORTHO05D001650 2.5e-06 57.0 84 34.5
SGA_v2.0_scaffold89G27532 Striga asiatica HOM05D001797 ORTHO05D001650 3.2e-06 56.6 93 37.6
BcaB04g17203 Brassica carinata HOM05D001797 ORTHO05D001650 4.2e-06 56.2 86 41.9
FAN21G3005 Fragaria x ananassa HOM05D001797 ORTHO05D001650 4.2e-06 56.2 87 37.9
Oeu062947.1 Olea europaea HOM05D001797 ORTHO05D001650 4.2e-06 56.2 86 34.9
Psat4g002360 Pisum sativum HOM05D001797 ORTHO05D001650 4.2e-06 56.2 87 37.9
CSS0035696 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 5.5e-06 55.8 82 39.0
FAN14G5464 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.5e-06 55.8 86 36.0
vmacro03619 Vaccinium macrocarpon HOM05D001797 ORTHO05D001650 5.5e-06 55.8 82 37.8
Ca_00757_v3 Cicer arietinum L. HOM05D001797 ORTHO05D001650 7.2e-06 55.5 88 39.8
Duzib235G0111 Durio zibethinus HOM05D001797 ORTHO05D001650 7.2e-06 55.5 80 38.8
Lsat_1_v5_gn_7_13200 Lactuca sativa HOM05D001797 ORTHO05D001650 7.2e-06 55.5 90 37.8
Nitab4.5_0001668g0160 Nicotiana tabacum HOM05D001797 ORTHO05D001650 7.2e-06 55.5 82 39.0
Oeu052841.1 Olea europaea HOM05D001797 ORTHO05D001650 7.2e-06 55.5 80 38.8
Sed0004833 Sechium edule HOM05D001797 ORTHO05D001650 7.2e-06 55.5 78 37.2
PGSC0003DMG400008441 Solanum tuberosum HOM05D001797 ORTHO05D001650 7.2e-06 55.5 80 38.8
CSS0032208 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 9.4e-06 55.1 86 38.4
HanXRQChr05g0129061 Helianthus annuus HOM05D001797 ORTHO05D001650 9.4e-06 55.1 85 37.6
Medtr7g056413 Medicago truncatula HOM05D001797 ORTHO05D001650 9.4e-06 55.1 89 36.0
Oeu052859.1 Olea europaea HOM05D001797 ORTHO05D001650 9.4e-06 55.1 88 37.5


User provided reference genes

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