Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.4e-122 443.0 218 100.0
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.9e-48 195.3 139 77.0
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.7e-30 136.3 139 52.5
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 7.9e-30 134.8 139 52.5
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.8e-29 133.7 139 53.2
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.8e-29 133.7 138 52.9
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.8e-29 133.7 138 52.9
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 8.8e-29 131.3 139 50.4
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 8.8e-29 131.3 138 52.9
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.1e-28 131.0 138 51.4
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 3.3e-28 129.4 138 51.4
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 4.4e-28 129.0 139 49.6
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 5.7e-28 128.6 138 50.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 7.4e-28 128.3 139 51.8
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 9.7e-28 127.9 138 50.7
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.3e-27 127.5 138 50.0
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-27 127.5 92 72.8
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.7e-27 127.1 138 50.7
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.8e-27 125.6 139 48.9
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 6.3e-27 125.2 138 50.7
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 6.3e-27 125.2 139 49.6
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 6.3e-27 125.2 138 48.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 8.2e-27 124.8 139 48.9
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.1e-26 124.4 139 49.6
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.1e-26 124.4 140 47.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.4e-26 124.0 139 48.2
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.4e-26 124.0 139 47.5
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.4e-26 124.0 138 48.6
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 2.4e-26 123.2 139 46.8
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.4e-26 123.2 139 46.0
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 2.4e-26 123.2 139 48.9
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 5.3e-26 122.1 139 48.2
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 5.3e-26 122.1 139 48.2
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 6.9e-26 121.7 138 49.3
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 9.1e-26 121.3 138 50.0
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.5e-25 120.6 139 46.0
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.5e-25 120.6 139 46.0
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.5e-25 120.6 138 48.6
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.5e-25 120.6 138 49.3
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.0e-25 120.2 204 38.2
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 2.6e-25 119.8 140 46.4
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.6e-25 119.8 139 47.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.4e-25 119.4 138 50.0
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 3.4e-25 119.4 138 47.1
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 4.5e-25 119.0 138 48.6
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 7.7e-25 118.2 138 45.7
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.0e-24 117.9 138 46.4
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.0e-24 117.9 139 45.3
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.0e-24 117.9 138 45.7
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.3e-24 117.5 138 47.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.3e-24 117.5 138 46.4
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-24 117.5 138 46.4
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.7e-24 117.1 138 48.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.7e-24 117.1 138 47.8
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.2e-24 116.7 138 49.3
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.9e-24 116.3 138 45.7
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 8.5e-24 114.8 138 47.1
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.1e-23 114.4 138 44.9
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.1e-23 114.4 139 43.2
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.4e-23 114.0 138 44.2
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.4e-23 114.0 138 46.4
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.4e-23 114.0 138 47.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.4e-23 114.0 138 47.1
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.9e-23 113.6 134 44.8
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.5e-23 113.2 137 42.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.2e-23 112.5 138 44.9
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 5.5e-23 112.1 138 44.9
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.5e-23 112.1 138 45.7
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.5e-23 112.1 138 47.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.2e-23 111.7 138 44.2
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 9.4e-23 111.3 138 44.9
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.2e-22 110.9 138 44.9
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.2e-22 110.9 138 44.2
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.2e-22 110.9 138 45.7
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-22 110.9 138 45.7
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.6e-22 110.5 138 43.5
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.6e-22 110.5 138 43.5
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.6e-22 110.5 138 43.5
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.6e-22 110.5 138 45.7
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.1e-22 110.2 162 38.3
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 2.7e-22 109.8 138 43.5
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.7e-22 109.8 138 43.5
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-22 109.8 122 46.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.7e-22 109.8 138 45.7
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 6.1e-22 108.6 138 44.9
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.1e-22 108.6 138 44.2
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 6.1e-22 108.6 138 42.8
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 7.9e-22 108.2 138 44.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.9e-22 108.2 165 40.6
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.0e-21 107.8 138 44.2
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 2.3e-21 106.7 138 43.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.0e-21 106.3 138 44.9
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 3.9e-21 105.9 138 43.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 3.9e-21 105.9 138 43.5
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 3.9e-21 105.9 136 44.9
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 5.2e-21 105.5 138 42.8
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 6.7e-21 105.1 138 42.0
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 6.7e-21 105.1 138 45.7
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 6.7e-21 105.1 122 48.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.0e-20 103.6 122 46.7
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.0e-20 103.6 138 42.8
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.6e-20 103.2 138 39.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 7.4e-20 101.7 139 41.0
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 9.7e-20 101.3 138 43.5
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.3e-19 100.9 139 39.6
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 4.8e-19 99.0 138 42.0
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 4.8e-19 99.0 138 39.9
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 6.3e-19 98.6 120 46.7
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.1e-18 96.3 138 41.3
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 4.1e-18 95.9 138 42.0
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.9e-16 89.7 139 36.7
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.5e-16 88.6 115 44.3
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 1.1e-15 87.8 93 57.0
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.5e-15 86.7 151 37.1
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.2e-15 86.3 137 35.0
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 2.7e-14 83.2 77 53.2
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.7e-14 83.2 69 59.4
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.7e-14 83.2 160 35.0
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 6.1e-14 82.0 124 39.5
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.4e-13 80.9 143 35.0
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.0e-13 79.7 67 61.2
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 5.7e-12 75.5 68 57.4
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 7.5e-12 75.1 130 39.2
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.3e-11 74.3 141 36.2
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.3e-11 74.3 131 38.9
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.2e-11 73.6 74 51.4
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 3.7e-11 72.8 86 46.5
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.7e-09 66.6 141 32.6
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 3.5e-09 66.2 59 52.5
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 5.0e-08 62.4 63 55.6
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.1e-07 61.2 74 44.6
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.9e-07 60.5 43 60.5
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.4e-07 58.2 86 36.0
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.7e-06 56.6 94 39.4
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.0e-06 55.1 76 43.4
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 8.0e-06 55.1 93 39.8


User provided reference genes

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