Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 0.0e+00 1624.4 803 100.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 8.4e-279 963.8 812 60.2
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 2.4e-273 945.7 811 58.9
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 9.4e-270 933.7 807 56.9
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.4e-264 915.2 814 56.6
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 5.0e-263 911.4 808 56.6
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.6e-261 906.4 811 55.6
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 1.8e-260 902.9 808 57.3
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 2.0e-259 899.4 812 56.2
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 1.7e-258 896.3 811 56.4
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.7e-258 896.3 812 55.5
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 4.8e-258 894.8 811 56.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 6.3e-258 894.4 812 55.4
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 6.3e-258 894.4 810 56.4
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.6e-256 889.8 806 54.3
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.5e-256 888.3 813 55.5
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 2.9e-255 885.6 869 53.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.2e-254 881.7 804 54.1
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 4.2e-254 881.7 814 54.8
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 7.2e-254 880.9 804 54.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 7.2e-254 880.9 814 55.0
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 2.1e-253 879.4 811 55.0
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 3.6e-253 878.6 806 56.1
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 6.1e-253 877.9 808 55.7
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 8.0e-253 877.5 809 55.4
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 8.0e-253 877.5 812 53.9
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.4e-252 876.7 809 54.0
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.4e-252 876.7 804 54.0
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.0e-252 875.5 807 54.6
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 1.1e-251 873.6 806 55.8
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 2.6e-251 872.5 811 55.0
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 5.7e-251 871.3 813 53.3
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.7e-250 869.8 807 55.1
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 3.7e-250 868.6 818 55.0
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 6.3e-250 867.8 807 54.9
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 8.2e-250 867.5 818 53.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.4e-249 866.7 807 53.9
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.8e-249 866.3 806 54.0
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 7.0e-249 864.4 807 54.8
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.2e-248 863.6 829 54.5
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.2e-248 863.6 807 54.6
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 4.5e-248 861.7 814 54.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 7.7e-248 860.9 807 54.4
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 7.7e-248 860.9 849 52.1
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.7e-247 859.8 810 54.3
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 5.5e-246 854.7 806 54.3
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 7.2e-246 854.4 810 54.0
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 3.6e-245 852.0 808 53.1
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 4.7e-245 851.7 809 53.5
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 3.0e-244 849.0 807 53.2
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 6.8e-244 847.8 812 51.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 2.6e-243 845.9 807 53.9
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.4e-241 839.3 807 53.3
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 4.1e-241 838.6 806 53.8
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.1e-241 837.4 813 53.4
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.2e-240 837.0 814 52.8
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.3e-239 833.6 807 53.0
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.1e-238 830.5 806 52.0
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.5e-238 828.2 808 53.2
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 7.2e-238 827.8 785 52.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.5e-238 827.4 809 53.0
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.2e-237 827.0 801 53.1
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.6e-237 826.6 818 52.2
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 4.7e-237 825.1 815 53.4
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 1.8e-236 823.2 814 52.7
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.2e-235 820.5 807 53.2
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 7.5e-235 817.8 816 52.0
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.3e-234 817.0 818 52.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 8.3e-234 814.3 804 52.5
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.4e-233 813.5 818 52.4
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-233 813.5 802 52.6
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.4e-233 812.8 813 52.3
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.4e-233 812.8 813 52.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.4e-233 812.8 822 52.1
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 3.1e-233 812.4 813 52.3
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.1e-233 812.0 816 51.2
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 4.5e-232 808.5 819 50.9
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.5e-230 800.8 870 49.4
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.0e-228 797.3 820 51.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 1.8e-228 796.6 800 50.8
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 4.4e-227 792.0 804 51.6
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 9.8e-227 790.8 800 51.1
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 3.2e-225 785.8 805 50.9
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 4.1e-225 785.4 804 50.2
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 1.6e-224 783.5 839 51.1
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 5.9e-224 781.6 805 50.9
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 3.0e-223 779.2 808 52.5
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 6.6e-223 778.1 805 52.3
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 2.5e-222 776.2 817 49.2
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 3.5e-216 755.7 809 49.4
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.5e-214 750.4 808 49.4
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.1e-212 742.7 820 49.4
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 1.4e-209 733.8 813 49.2
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.9e-206 723.4 626 55.4
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.3e-206 722.6 807 48.0
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.1e-201 705.7 730 50.8
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 3.6e-197 692.6 582 58.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 9.3e-193 677.9 887 44.9
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 4.5e-187 659.1 561 57.0
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 7.1e-185 651.7 811 45.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 4.8e-181 639.0 818 42.1
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.9e-158 563.9 818 41.6
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.0e-154 549.3 825 40.8
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 8.8e-151 538.5 462 57.6
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.5e-150 537.7 846 39.5
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 3.8e-146 523.1 820 38.9
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.9e-145 520.8 841 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 4.4e-142 509.6 825 36.2
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.7e-136 489.6 475 52.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 3.3e-134 483.4 817 37.7
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 4.8e-133 479.6 846 34.8
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.4e-119 434.9 584 42.6
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 3.4e-118 430.3 674 39.6
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.0e-114 418.7 809 36.2
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 6.6e-114 416.0 818 35.9
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 1.9e-113 414.5 845 32.7
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 2.4e-108 397.5 337 58.2
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 8.9e-87 325.9 392 44.4
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 2.0e-86 324.7 669 30.2
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.5e-73 282.0 368 43.8
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 8.1e-64 249.6 744 28.5
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.6e-54 218.0 268 45.1
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.0e-53 216.1 155 63.9
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.2e-53 214.9 268 44.8
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.9e-53 214.5 268 44.4
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.8e-45 187.6 163 58.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 5.1e-42 177.2 846 23.4
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.1e-41 176.0 200 46.0
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.2e-36 157.9 172 48.3
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.2e-30 139.4 107 62.6
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 5.9e-30 137.1 347 29.7
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 3.6e-27 127.9 132 53.0
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.6e-25 121.7 133 49.6
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 6.1e-19 100.5 120 43.3
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 9.7e-17 93.2 82 57.3
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.4e-15 88.6 63 60.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.5e-12 78.6 130 35.4
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 5.5e-12 77.4 60 66.7
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 7.2e-12 77.0 103 44.7
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.6e-11 75.9 103 42.7
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 2.0e-09 68.9 45 62.2
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.4e-09 68.2 45 62.2


User provided reference genes

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