Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.3e-108 396.4 194 100.0
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 1.0e-57 227.3 190 60.5
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.5e-56 223.4 186 60.2
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.3e-55 220.3 184 60.3
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.9e-55 218.4 186 57.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 1.8e-54 216.5 185 56.8
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 3.1e-54 215.7 185 58.4
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.1e-54 215.3 185 57.8
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 9.2e-54 214.2 147 67.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 9.2e-54 214.2 185 57.3
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.2e-53 213.8 184 58.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.6e-53 213.4 187 59.4
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.0e-53 213.0 185 56.2
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.7e-53 212.6 146 66.4
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 3.5e-53 212.2 161 64.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 3.5e-53 212.2 185 56.2
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 4.5e-53 211.8 182 59.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.9e-53 211.5 186 57.0
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.9e-53 211.5 187 57.8
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 7.7e-53 211.1 185 56.2
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 7.7e-53 211.1 134 73.1
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 7.7e-53 211.1 160 63.8
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.0e-52 210.7 185 57.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-52 210.3 186 57.5
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.7e-52 209.9 185 57.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.3e-52 209.5 168 58.9
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 2.3e-52 209.5 185 55.7
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 2.9e-52 209.1 186 57.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.9e-52 209.1 185 55.1
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.6e-52 207.6 188 58.0
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-51 207.2 179 59.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.9e-51 206.5 186 57.0
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.9e-51 206.5 186 57.0
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.5e-51 206.1 185 57.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 4.3e-51 205.3 187 54.5
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.6e-51 204.9 185 55.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 5.6e-51 204.9 185 55.7
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 7.3e-51 204.5 134 69.4
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 7.3e-51 204.5 161 63.4
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 9.5e-51 204.1 189 57.1
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 9.5e-51 204.1 189 56.6
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.2e-50 203.8 189 56.1
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.2e-50 203.8 142 67.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.2e-50 203.8 186 55.9
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.2e-50 203.8 187 55.1
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.1e-50 203.0 137 70.1
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.8e-50 202.6 161 62.1
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.8e-50 202.6 119 79.8
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 4.7e-50 201.8 137 69.3
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 6.1e-50 201.4 185 53.5
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 6.1e-50 201.4 185 56.8
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 8.0e-50 201.1 188 53.7
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.0e-49 200.7 187 53.5
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.0e-49 200.7 134 67.9
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.0e-49 200.7 147 63.9
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.0e-49 200.7 189 56.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.0e-49 200.7 142 67.6
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.4e-49 200.3 121 76.9
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.4e-49 200.3 191 57.6
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.8e-49 199.9 136 67.6
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.3e-49 199.5 135 66.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.3e-49 199.5 134 70.1
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.0e-49 199.1 134 67.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 3.0e-49 199.1 142 66.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 3.0e-49 199.1 146 65.1
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 4.0e-49 198.7 184 53.8
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 4.0e-49 198.7 186 55.9
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 5.2e-49 198.4 189 54.5
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 5.2e-49 198.4 134 67.2
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 5.2e-49 198.4 134 67.2
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 5.2e-49 198.4 134 67.2
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 6.8e-49 198.0 134 67.2
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 6.8e-49 198.0 135 68.9
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 6.8e-49 198.0 187 52.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 6.8e-49 198.0 145 64.8
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.8e-49 198.0 189 57.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 8.9e-49 197.6 189 54.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 8.9e-49 197.6 142 66.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.2e-48 197.2 187 52.4
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.5e-48 196.8 135 65.9
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 1.5e-48 196.8 135 65.9
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.5e-48 196.8 161 61.5
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-48 196.8 126 73.0
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 2.0e-48 196.4 146 62.3
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.0e-48 196.4 174 57.5
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.0e-48 196.4 145 65.5
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 2.6e-48 196.1 188 54.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.4e-48 195.7 134 66.4
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 5.7e-48 194.9 146 63.0
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 7.5e-48 194.5 135 66.7
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.3e-47 193.7 134 64.9
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.7e-47 193.4 144 63.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.2e-47 193.0 187 53.5
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.9e-47 192.6 200 50.5
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 2.9e-47 192.6 133 67.7
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.7e-47 192.2 136 66.2
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 6.4e-47 191.4 222 47.7
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 8.3e-47 191.0 141 65.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 8.3e-47 191.0 189 51.9
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.1e-46 190.7 145 64.1
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.1e-46 190.7 186 52.7
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.1e-46 190.7 120 73.3
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 2.4e-46 189.5 209 51.7
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.1e-46 188.7 127 70.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.1e-46 188.7 161 60.2
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.6e-45 186.8 192 52.6
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.7e-45 186.0 178 55.1
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.7e-44 183.3 187 54.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.7e-44 183.3 110 73.6
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 3.9e-44 182.2 114 71.1
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 5.0e-44 181.8 220 45.9
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 6.6e-44 181.4 135 63.7
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.5e-43 180.3 248 42.7
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.5e-43 179.5 188 54.3
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 7.3e-43 177.9 111 72.1
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 2.1e-42 176.4 149 59.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.9e-39 166.0 116 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.4e-38 162.9 116 61.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.6e-37 160.2 156 53.8
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.6e-37 160.2 115 58.3
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.6e-37 160.2 125 63.2
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.5e-37 159.1 156 55.8
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.7e-36 156.8 111 64.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.9e-36 155.6 93 78.5
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 8.6e-36 154.5 149 51.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.1e-35 154.1 111 62.2
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.6e-34 150.2 147 52.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.0e-33 145.6 113 59.3
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.0e-32 143.3 137 50.4
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.2e-31 139.8 185 43.8
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.6e-29 133.7 114 54.4
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 3.5e-29 132.5 81 74.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.3e-23 114.0 133 44.4
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.9e-23 112.1 105 49.5
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.1e-22 110.9 152 42.8
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-21 107.5 134 41.0
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.7e-21 106.3 114 47.4
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.0e-20 104.4 116 43.1
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.3e-20 103.2 131 47.3
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 8.4e-15 84.7 89 44.9
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 8.7e-12 74.7 69 53.6


User provided reference genes

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