Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.5e-62 242.7 118 100.0
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.5e-46 188.7 112 82.1
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 4.3e-46 188.0 112 79.5
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 9.5e-46 186.8 112 81.2
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 9.5e-46 186.8 112 80.4
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 2.1e-45 185.7 112 80.4
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 3.6e-45 184.9 112 81.2
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.4e-44 183.0 112 79.5
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.1e-44 181.8 112 79.5
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 3.1e-44 181.8 112 78.6
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 4.0e-44 181.4 112 79.5
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.2e-44 181.0 112 78.6
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 5.2e-44 181.0 112 78.6
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 5.2e-44 181.0 110 77.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 6.8e-44 180.6 112 77.7
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 6.8e-44 180.6 112 77.7
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 6.8e-44 180.6 110 76.4
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 8.9e-44 180.3 112 76.8
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.2e-43 179.9 110 76.4
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.2e-43 179.9 112 77.7
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.2e-43 179.9 110 79.1
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 1.2e-43 179.9 110 77.3
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.5e-43 179.5 112 78.6
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.5e-43 179.5 110 79.1
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.5e-43 179.5 110 77.3
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 2.0e-43 179.1 112 76.8
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.0e-43 179.1 112 76.8
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.0e-43 179.1 110 78.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.0e-43 179.1 112 79.5
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 2.6e-43 178.7 112 76.8
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.6e-43 178.7 112 76.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 2.6e-43 178.7 111 77.5
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.6e-43 178.7 112 77.7
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 3.4e-43 178.3 112 75.9
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 4.4e-43 177.9 112 77.7
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.8e-43 177.6 110 78.2
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 5.8e-43 177.6 112 75.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 7.5e-43 177.2 111 75.7
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 7.5e-43 177.2 112 77.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 7.5e-43 177.2 112 76.8
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 9.8e-43 176.8 112 75.0
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.8e-43 176.8 112 77.7
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.8e-43 176.8 112 77.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 9.8e-43 176.8 112 77.7
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 9.8e-43 176.8 110 75.5
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 9.8e-43 176.8 110 76.4
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.3e-42 176.4 112 75.9
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.3e-42 176.4 112 77.7
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.3e-42 176.4 112 76.8
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.3e-42 176.4 110 74.5
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.3e-42 176.4 112 75.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.7e-42 176.0 112 75.0
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.2e-42 175.6 111 72.1
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.2e-42 175.6 112 75.9
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 2.2e-42 175.6 110 74.5
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.9e-42 175.3 112 75.0
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 4.9e-42 174.5 110 74.5
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 4.9e-42 174.5 112 74.1
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 4.9e-42 174.5 112 76.8
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 6.4e-42 174.1 112 75.0
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 6.4e-42 174.1 112 73.2
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 6.4e-42 174.1 110 75.5
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 8.3e-42 173.7 112 75.0
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 8.3e-42 173.7 110 73.6
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 8.3e-42 173.7 112 75.0
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 8.3e-42 173.7 112 75.0
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.1e-41 173.3 112 75.0
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.4e-41 172.9 112 73.2
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.4e-41 172.9 111 73.9
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.9e-41 172.6 112 74.1
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.9e-41 172.6 110 75.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.4e-41 172.2 112 74.1
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.2e-41 171.8 112 75.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.2e-41 171.8 112 75.9
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.2e-41 171.8 112 75.9
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.2e-41 171.8 110 72.7
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.1e-41 171.4 112 74.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 4.1e-41 171.4 109 76.1
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 5.4e-41 171.0 112 75.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 5.4e-41 171.0 110 74.5
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 7.1e-41 170.6 112 73.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 9.2e-41 170.2 112 75.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 9.2e-41 170.2 112 73.2
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 9.2e-41 170.2 112 71.4
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 9.2e-41 170.2 112 75.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 9.2e-41 170.2 112 73.2
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 9.2e-41 170.2 112 72.3
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.2e-40 169.9 110 72.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.6e-40 169.5 112 74.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.6e-40 169.5 112 73.2
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.7e-40 168.7 112 74.1
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 2.7e-40 168.7 108 74.1
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 3.5e-40 168.3 112 74.1
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 3.5e-40 168.3 112 75.0
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 4.6e-40 167.9 111 73.9
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 7.8e-40 167.2 112 74.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.0e-39 166.8 110 72.7
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.3e-39 166.4 112 72.3
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-39 166.4 112 72.3
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.3e-39 166.4 112 72.3
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 2.3e-39 165.6 112 71.4
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.0e-39 165.2 112 71.4
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 3.0e-39 165.2 112 71.4
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 3.0e-39 165.2 112 72.3
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.0e-39 165.2 112 72.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.9e-39 164.9 109 71.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.9e-39 164.9 108 73.1
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 5.1e-39 164.5 112 70.5
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 6.6e-39 164.1 136 64.0
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 8.6e-39 163.7 112 72.3
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.5e-38 162.9 99 78.8
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 5.6e-38 161.0 112 67.9
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 9.5e-38 160.2 112 68.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 6.2e-37 157.5 107 72.9
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.8e-36 156.0 96 79.2
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 5.2e-36 154.5 112 65.2
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.0e-35 152.5 107 72.0
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.6e-35 152.1 110 65.5
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 4.9e-34 147.9 108 63.0
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.4e-33 146.4 162 53.1
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.7e-32 142.1 110 59.1
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.7e-31 139.4 121 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 3.3e-30 135.2 97 68.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 5.6e-30 134.4 111 54.1
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 9.6e-30 133.7 110 57.3
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 8.1e-29 130.6 110 51.8
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 8.1e-29 130.6 110 51.8
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 3.4e-27 125.2 92 69.6
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.4e-27 124.8 119 52.9
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 8.4e-26 120.6 72 80.6
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.1e-24 115.9 72 79.2
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 3.5e-24 115.2 79 73.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 3.5e-24 115.2 70 82.9
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 7.8e-24 114.0 76 75.0
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.3e-22 108.2 70 78.6
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.6e-21 105.1 70 71.4
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 8.1e-21 104.0 97 59.8
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.8e-20 102.8 67 76.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.3e-20 101.3 70 75.7
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.1e-17 93.6 115 45.2
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.1e-17 93.6 115 45.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.4e-17 92.4 115 45.2
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.2e-16 90.1 60 76.7
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.1e-14 83.6 51 72.5


User provided reference genes

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