Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 4.0e-309 1063.9 529 100.0
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.9e-141 506.9 568 54.4
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.2e-140 504.2 569 54.3
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 2.7e-140 503.1 568 54.2
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.0e-139 499.6 564 53.5
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 8.7e-139 498.0 574 51.7
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.1e-138 497.7 568 53.5
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.3e-138 496.1 568 53.0
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 1.6e-137 493.8 557 53.3
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 2.1e-137 493.4 560 53.2
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 6.2e-137 491.9 557 53.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 3.1e-136 489.6 561 52.4
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.1e-136 489.6 556 53.2
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 9.0e-136 488.0 567 52.6
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.4e-135 486.1 541 52.9
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.4e-135 486.1 557 52.6
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 9.9e-135 484.6 562 53.0
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.9e-133 480.3 564 51.8
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.4e-133 479.9 566 51.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 3.2e-133 479.6 568 52.5
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.2e-132 477.6 558 52.2
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.1e-132 476.9 572 52.1
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 3.5e-132 476.1 559 51.7
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 6.0e-132 475.3 535 52.5
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 7.8e-132 474.9 572 50.9
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.7e-131 473.8 566 52.8
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 6.6e-131 471.9 560 52.9
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 6.6e-131 471.9 562 51.6
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.3e-130 469.5 573 52.0
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.6e-130 468.8 561 52.6
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 7.3e-130 468.4 545 52.5
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 7.3e-130 468.4 558 52.9
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-129 467.6 560 52.0
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.6e-129 467.2 560 52.3
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.8e-129 466.5 541 51.8
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 6.2e-129 465.3 538 53.2
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.1e-129 464.9 565 51.7
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 5.3e-128 462.2 558 52.2
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.3e-126 457.6 559 50.1
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 2.9e-126 456.4 576 49.8
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.9e-126 456.4 572 51.4
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 6.4e-126 455.3 557 50.6
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 6.4e-126 455.3 566 49.3
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.4e-125 454.1 554 50.7
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 3.2e-125 453.0 573 50.6
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 7.1e-125 451.8 574 50.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 7.1e-125 451.8 570 47.9
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 9.3e-125 451.4 569 50.6
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 9.3e-125 451.4 554 48.0
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.1e-124 450.3 552 51.6
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 2.1e-124 450.3 554 49.1
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 7.9e-124 448.4 570 50.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.3e-123 447.6 554 50.0
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.0e-123 446.4 570 48.9
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.0e-123 446.4 555 50.5
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 3.9e-123 446.0 611 45.7
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 5.1e-123 445.7 560 50.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 6.7e-123 445.3 557 50.3
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.1e-122 444.5 554 49.5
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.5e-122 444.1 554 47.5
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 2.5e-122 443.4 552 50.7
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.6e-121 440.7 566 50.7
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 2.1e-121 440.3 567 49.7
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 6.2e-121 438.7 566 50.0
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 6.2e-121 438.7 558 50.4
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 8.1e-121 438.3 549 49.7
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 8.1e-121 438.3 583 50.8
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 2.4e-120 436.8 561 50.6
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 3.1e-120 436.4 566 49.8
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.1e-120 436.4 572 47.9
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.0e-120 436.0 550 50.4
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.2e-119 434.5 553 49.7
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.5e-119 432.6 556 49.3
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.8e-119 432.2 548 50.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 9.9e-119 431.4 581 47.7
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 9.9e-119 431.4 581 47.8
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.7e-118 430.6 553 49.7
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 2.2e-118 430.3 550 49.1
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 3.8e-118 429.5 562 49.6
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 4.9e-118 429.1 518 50.6
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.9e-118 429.1 565 49.6
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 8.4e-118 428.3 542 49.3
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 4.2e-117 426.0 557 50.1
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 9.3e-117 424.9 589 48.6
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 9.3e-117 424.9 559 48.7
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 2.7e-116 423.3 557 49.6
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 4.8e-113 412.5 643 44.2
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.1e-112 411.4 563 48.5
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 9.0e-112 408.3 541 48.6
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.5e-111 407.5 471 52.4
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.0e-111 407.1 606 45.4
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 4.9e-110 402.5 587 45.5
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 6.5e-110 402.1 556 47.3
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 6.5e-110 402.1 556 47.5
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 8.4e-110 401.7 489 51.7
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 1.1e-109 401.4 556 47.1
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 1.4e-109 401.0 576 45.3
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.4e-109 401.0 549 47.5
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.4e-109 401.0 568 47.4
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.9e-109 400.6 556 47.1
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.9e-109 400.6 556 47.1
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.5e-108 396.4 496 51.8
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.3e-107 394.4 547 45.7
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.0e-107 393.3 543 46.0
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 7.4e-106 388.7 540 46.7
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.3e-105 387.9 551 45.2
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.6e-105 387.5 628 41.9
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.4e-104 384.4 467 49.5
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 2.4e-104 383.6 544 46.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 1.3e-97 361.3 454 49.6
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 3.7e-97 359.8 429 52.7
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.7e-94 350.9 474 46.2
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.7e-94 350.9 391 51.9
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.9e-94 350.1 474 46.0
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 7.2e-85 318.9 420 48.8
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.4e-80 304.7 572 40.7
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.0e-78 298.5 435 45.5
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.1e-64 251.9 348 44.8
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.7e-49 201.4 466 34.3
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 8.6e-46 189.1 271 41.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.4e-40 171.8 305 41.0
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 9.9e-26 122.5 442 29.9
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.1e-19 100.9 278 27.7
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 9.0e-19 99.4 99 56.6
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 7.6e-18 96.3 218 31.7
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.9e-18 95.9 233 30.5
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 9.9e-18 95.9 160 43.1
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.2e-15 89.0 88 53.4
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.0e-14 85.9 243 30.0
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 1.3e-14 85.5 96 53.1
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.7e-14 85.1 228 28.5
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.3e-12 79.0 112 43.8
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.6e-12 78.6 77 53.2


User provided reference genes

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