Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011709 Vanilla planifolia HOM05D007981 ORTHO05D001345 9.8e-240 833.2 458 100.0
HPP92_001255 Vanilla planifolia HOM05D007981 ORTHO05D001345 1.3e-50 204.9 462 41.8
HPP92_001919 Vanilla planifolia HOM05D007981 ORTHO05D001345 6.6e-26 122.9 167 46.7
MBI07_g42070_MAGBIO Magnolia biondii HOM05D007981 ORTHO05D001345 7.5e-22 109.4 448 29.7
Os09g0518600 Oryza sativa ssp. japonica HOM05D007981 ORTHO05D001345 2.3e-18 97.8 120 47.5
Peaxi162Scf00344g00031 Petunia axillaris HOM05D007981 ORTHO05D001345 2.9e-18 97.4 121 47.1
ECA246G2938 Erigeron canadensis HOM05D007981 ORTHO05D001345 8.6e-18 95.9 343 31.8
TAR633G1356 Trochodendron aralioides HOM05D007981 ORTHO05D001345 1.5e-17 95.1 455 28.1
Ciclev10017970m.g Citrus clementina HOM05D007981 ORTHO05D001345 2.5e-17 94.4 437 29.3
GSVIVG01031362001 Vitis vinifera HOM05D007981 ORTHO05D001345 9.5e-17 92.4 305 31.1
Thecc.09G196000 Theobroma cacao HOM05D007981 ORTHO05D001345 1.2e-16 92.0 452 29.6
TWI36G0229 Tripterygium wilfordii HOM05D007981 ORTHO05D001345 4.7e-16 90.1 302 34.1
Gohir.D05G001500 Gossypium hirsutum HOM05D007981 ORTHO05D001345 6.1e-16 89.7 161 42.2
Prupe.6G365700 Prunus persica HOM05D007981 ORTHO05D001345 8.0e-16 89.4 111 46.8
Atru.chr10.126 Acer truncatum HOM05D007981 ORTHO05D001345 1.4e-15 88.6 149 40.9
Lsat_1_v5_gn_3_25100 Lactuca sativa HOM05D007981 ORTHO05D001345 1.4e-15 88.6 293 32.8
Os08g0543000 Oryza sativa ssp. japonica HOM05D007981 ORTHO05D001345 2.3e-15 87.8 146 42.5
SalBow2G2157 Salvia bowleyana HOM05D007981 ORTHO05D001345 5.2e-15 86.7 104 49.0
MBI07_g10349_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 2.2e-13 81.3 86 51.2
arahy.Tifrunner.gnm1.ann1.26SKGH Arachis hypogaea HOM05D007981 ORTHO05D001345 3.7e-13 80.5 117 44.4
Gorai.009G001400 Gossypium raimondii HOM05D007981 ORTHO05D001345 4.9e-13 80.1 310 31.9
Hma1.2p1_0662F.1_g198260 Hydrangea macrophylla HOM05D007981 ORTHO05D001345 8.3e-13 79.3 332 29.8
Gohir.A05G001200 Gossypium hirsutum HOM05D007981 ORTHO05D001345 1.1e-12 79.0 292 32.2
PSO801G0843 Papaver somniferum HOM05D001930 ORTHO05D001345 1.1e-12 79.0 181 38.1
RcHm_v2.0_Chr1g0369981 Rosa chinensis HOM05D001930 ORTHO05D001345 1.9e-12 78.2 150 42.7
Solyc11g008840.3 Solanum lycopersicum HOM05D007981 ORTHO05D001345 3.2e-12 77.4 142 39.4
FAN09G0734 Fragaria x ananassa HOM05D007981 ORTHO05D001345 4.1e-12 77.0 329 30.7
arahy.Tifrunner.gnm1.ann1.I8BS46 Arachis hypogaea HOM05D001930 ORTHO05D001345 5.4e-12 76.6 98 51.0
FvH4_7g24320 Fragaria vesca HOM05D001930 ORTHO05D001345 5.4e-12 76.6 144 41.7
FAN10G2989 Fragaria x ananassa HOM05D001930 ORTHO05D001345 5.4e-12 76.6 159 38.4
PSO339G3119 Papaver somniferum HOM05D001930 ORTHO05D001345 7.0e-12 76.3 181 35.9
FAN01G1543 Fragaria x ananassa HOM05D001930 ORTHO05D001345 9.2e-12 75.9 151 41.7
FAN03G2510 Fragaria x ananassa HOM05D001930 ORTHO05D001345 9.2e-12 75.9 144 41.7
Lj1A953G44 Lonicera japonica HOM05D001930 ORTHO05D001345 9.2e-12 75.9 154 38.3
GSVIVG01032844001 Vitis vinifera HOM05D001930 ORTHO05D001345 9.2e-12 75.9 172 37.8
SGA_v2.0_scaffold44G16687 Striga asiatica HOM05D001930 ORTHO05D001345 1.6e-11 75.1 137 40.9
Lj6g0015169 Lotus japonicus HOM05D001930 ORTHO05D001345 2.0e-11 74.7 171 37.4
LjContig00142g0017848 Lotus japonicus HOM05D001930 ORTHO05D001345 2.0e-11 74.7 171 37.4
Rhsim03G0142000 Rhododendron simsii HOM05D001930 ORTHO05D001345 2.0e-11 74.7 168 39.9
Ca_15267_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 2.7e-11 74.3 145 40.7
FvH4_6g00040 Fragaria vesca HOM05D007981 ORTHO05D001345 2.7e-11 74.3 336 30.1
Aqoxy2G00919 Aquilegia oxysepala HOM05D001930 ORTHO05D001345 4.6e-11 73.6 172 39.0
Cfa001331 Carpinus fangiana HOM05D001930 ORTHO05D001345 4.6e-11 73.6 169 35.5
Lalb_Chr15g0084191 Lupinus albus HOM05D001930 ORTHO05D001345 4.6e-11 73.6 132 42.4
MBI14_g28262_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 4.6e-11 73.6 155 36.1
Peaxi162Scf01208g00017 Petunia axillaris HOM05D001930 ORTHO05D001345 6.0e-11 73.2 91 45.1
TAR369G0785 Trochodendron aralioides HOM05D001930 ORTHO05D001345 6.0e-11 73.2 155 39.4
MBI05_g34494_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 7.8e-11 72.8 128 40.6
Migut.G01304 Erythranthe guttata HOM05D007981 ORTHO05D001345 1.0e-10 72.4 141 38.3
MD01G1132400 Malus domestica HOM05D001930 ORTHO05D001345 1.0e-10 72.4 146 41.8
Rhsim05G0162500 Rhododendron simsii HOM05D007981 ORTHO05D001345 1.0e-10 72.4 454 27.3
CAN.G691.25 Capsicum annuum HOM05D007981 ORTHO05D001345 1.7e-10 71.6 295 29.8
Ciclev10030993m.g Citrus clementina HOM05D001930 ORTHO05D001345 1.7e-10 71.6 169 36.7
Cpa.g.sc19.190 Carica papaya HOM05D001930 ORTHO05D001345 2.3e-10 71.2 171 40.4
PGR031G0831 Punica granatum HOM05D007981 ORTHO05D001345 2.3e-10 71.2 337 30.9
SalBow1G7719 Salvia bowleyana HOM05D007981 ORTHO05D001345 2.3e-10 71.2 159 39.0
Hund13841 Selenicereus undatus HOM05D001930 ORTHO05D001345 2.3e-10 71.2 90 50.0
CDE07G0205 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 3.0e-10 70.9 91 47.3
Manes.12G000800 Manihot esculenta HOM05D007981 ORTHO05D001345 3.0e-10 70.9 414 26.1
ClCG11G006220 Citrullus lanatus HOM05D001930 ORTHO05D001345 3.9e-10 70.5 161 36.0
MELO3C008291.2 Cucumis melo HOM05D001930 ORTHO05D001345 3.9e-10 70.5 161 36.0
ATR0618G241 Amborella trichopoda HOM05D001930 ORTHO05D001345 5.0e-10 70.1 155 39.4
CiPaw.01G297400 Carya illinoinensis HOM05D001930 ORTHO05D001345 5.0e-10 70.1 169 36.7
CsaV3_6G001770 Cucumis sativus L. HOM05D001930 ORTHO05D001345 5.0e-10 70.1 160 35.6
Nitab4.5_0000802g0030 Nicotiana tabacum HOM05D001930 ORTHO05D001345 5.0e-10 70.1 143 39.9
BolC4t22362H Brassica oleracea HOM05D001930 ORTHO05D001345 6.6e-10 69.7 106 44.3
Phvul.011G197200 Phaseolus vulgaris HOM05D007981 ORTHO05D001345 6.6e-10 69.7 296 30.1
CAN.G301.5 Capsicum annuum HOM05D001930 ORTHO05D001345 8.6e-10 69.3 163 35.0
Eucgr.G03055 Eucalyptus grandis HOM05D001930 ORTHO05D001345 8.6e-10 69.3 89 44.9
Lalb_Chr18g0052641 Lupinus albus HOM05D001930 ORTHO05D001345 8.6e-10 69.3 90 47.8
Oeu022685.1 Olea europaea HOM05D007981 ORTHO05D001345 8.6e-10 69.3 306 30.4
Phvul.001G241800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 8.6e-10 69.3 175 35.4
LjContig00357g0006827 Lotus japonicus HOM05D001930 ORTHO05D001345 1.1e-09 68.9 174 33.9
SalBow1G1067 Salvia bowleyana HOM05D007981 ORTHO05D001345 1.1e-09 68.9 152 36.2
Migut.G01332 Erythranthe guttata HOM05D007981 ORTHO05D001345 1.5e-09 68.6 248 31.5
Sopen03g026190 Solanum pennellii HOM05D001930 ORTHO05D001345 1.5e-09 68.6 146 34.2
PGSC0003DMG401011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 1.5e-09 68.6 146 34.9
Duzib114G0676 Durio zibethinus HOM05D001930 ORTHO05D001345 1.9e-09 68.2 185 35.1
PSO339G2624 Papaver somniferum HOM05D001930 ORTHO05D001345 1.9e-09 68.2 94 48.9
Psat4g190600 Pisum sativum HOM05D007981 ORTHO05D001345 1.9e-09 68.2 144 36.8
TAR636G1519 Trochodendron aralioides HOM05D007981 ORTHO05D001345 1.9e-09 68.2 342 29.8
VMungo1383G0091 Vigna mungo HOM05D001930 ORTHO05D001345 1.9e-09 68.2 154 39.0
Duzib106G1667 Durio zibethinus HOM05D001930 ORTHO05D001345 2.5e-09 67.8 95 47.4
MD12G1164800 Malus domestica HOM05D001930 ORTHO05D001345 2.5e-09 67.8 173 32.9
Manes.10G014000 Manihot esculenta HOM05D001930 ORTHO05D001345 2.5e-09 67.8 172 37.8
Medtr3g070300 Medicago truncatula HOM05D001930 ORTHO05D001345 2.5e-09 67.8 160 36.9
Ah.10g036510 Amaranthus hybridus HOM05D001930 ORTHO05D001345 3.3e-09 67.4 132 40.2
Hma1.2p1_0446F.1_g154590 Hydrangea macrophylla HOM05D001930 ORTHO05D001345 4.3e-09 67.0 162 35.8
Lalb_Chr10g0105111 Lupinus albus HOM05D001930 ORTHO05D001345 4.3e-09 67.0 182 35.2
Ciclev10011390m.g Citrus clementina HOM05D001930 ORTHO05D001345 5.6e-09 66.6 155 38.7
Gohir.D04G067400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 7.3e-09 66.2 133 36.1
Nitab4.5_0003138g0040 Nicotiana tabacum HOM05D001930 ORTHO05D001345 9.5e-09 65.9 92 42.4
Gorai.012G076400 Gossypium raimondii HOM05D001930 ORTHO05D001345 1.2e-08 65.5 133 36.1
arahy.Tifrunner.gnm1.ann1.1VS4ZL Arachis hypogaea HOM05D001930 ORTHO05D001345 1.6e-08 65.1 167 35.3
BcaB02g09056 Brassica carinata HOM05D001930 ORTHO05D001345 1.6e-08 65.1 205 33.2
COL.COLO4_25689 Corchorus olitorius HOM05D001930 ORTHO05D001345 1.6e-08 65.1 160 35.6
HanXRQChr12g0370531 Helianthus annuus HOM05D001930 ORTHO05D001345 1.6e-08 65.1 86 43.0
TPR.G2544 Trifolium pratense HOM05D001930 ORTHO05D001345 1.6e-08 65.1 146 39.0
HPP92_019257 Vanilla planifolia HOM05D001930 ORTHO05D001345 1.6e-08 65.1 147 40.8
VMungo0647G2500 Vigna mungo HOM05D001930 ORTHO05D001345 1.6e-08 65.1 155 38.1
Migut.A01091 Erythranthe guttata HOM05D007981 ORTHO05D001345 2.8e-08 64.3 282 29.8
Phvul.008G224800 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 2.8e-08 64.3 156 37.2
PGSC0003DMG402011931 Solanum tuberosum HOM05D001930 ORTHO05D001345 2.8e-08 64.3 134 34.3
Atru.chr12.18 Acer truncatum HOM05D001930 ORTHO05D001345 3.6e-08 63.9 94 43.6
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 3.6e-08 63.9 156 35.3
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 3.6e-08 63.9 169 36.1
Thecc.10G020700 Theobroma cacao HOM05D001930 ORTHO05D001345 3.6e-08 63.9 173 35.8
FAN02G3477 Fragaria x ananassa HOM05D001930 ORTHO05D001345 4.7e-08 63.5 105 41.9
TWI74G0539 Tripterygium wilfordii HOM05D001930 ORTHO05D001345 4.7e-08 63.5 155 39.4
MSTRG.8950 Avicennia marina HOM05D001930 ORTHO05D001345 6.2e-08 63.2 171 33.9
PGR142G0208 Punica granatum HOM05D001930 ORTHO05D001345 6.2e-08 63.2 157 33.1
AUR62022866 Chenopodium quinoa HOM05D001930 ORTHO05D001345 8.0e-08 62.8 157 35.0
arahy.Tifrunner.gnm1.ann1.238B6D Arachis hypogaea HOM05D001930 ORTHO05D001345 1.1e-07 62.4 159 35.2
Glyma.02G256600 Glycine max HOM05D001930 ORTHO05D001345 1.1e-07 62.4 168 35.7
Actinidia00941 Actinidia chinensis HOM05D001930 ORTHO05D001345 1.4e-07 62.0 166 34.3
Migut.G01306 Erythranthe guttata HOM05D007981 ORTHO05D001345 1.4e-07 62.0 296 30.1
FAN05G1780 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.4e-07 62.0 104 41.3
FAN05G4567 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.4e-07 62.0 104 41.3
FAN09G1606 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.4e-07 62.0 104 41.3
FAN14G0995 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.4e-07 62.0 104 41.3
FAN14G1428 Fragaria x ananassa HOM05D001930 ORTHO05D001345 1.4e-07 62.0 104 41.3
Glyma.14G060100 Glycine max HOM05D001930 ORTHO05D001345 1.4e-07 62.0 159 35.8
PSO384G0402 Papaver somniferum HOM05D001930 ORTHO05D001345 1.4e-07 62.0 148 38.5
Migut.G01327 Erythranthe guttata HOM05D007981 ORTHO05D001345 1.8e-07 61.6 288 29.5
Oeu064385.2 Olea europaea HOM05D001930 ORTHO05D001345 1.8e-07 61.6 152 34.9
Hund13843 Selenicereus undatus HOM05D001930 ORTHO05D001345 1.8e-07 61.6 90 46.7
A05p06400 Brassica napus HOM05D001930 ORTHO05D001345 2.3e-07 61.2 156 34.0
BraA05t19608Z Brassica rapa HOM05D001930 ORTHO05D001345 2.3e-07 61.2 156 34.0
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 2.3e-07 61.2 157 35.7
THA.LOC104810086 Tarenaya hassleriana HOM05D001930 ORTHO05D001345 2.3e-07 61.2 89 42.7
TWI77G0036 Tripterygium wilfordii HOM05D001930 ORTHO05D001345 2.3e-07 61.2 130 40.0
arahy.Tifrunner.gnm1.ann1.84M4BY Arachis hypogaea HOM05D001930 ORTHO05D001345 3.1e-07 60.8 159 35.2
Cfa017216 Carpinus fangiana HOM05D001930 ORTHO05D001345 3.1e-07 60.8 154 33.8
HanXRQChr08g0222141 Helianthus annuus HOM05D001930 ORTHO05D001345 3.1e-07 60.8 153 35.3
Lsat_1_v5_gn_2_122761 Lactuca sativa HOM05D001930 ORTHO05D001345 3.1e-07 60.8 191 30.9
arahy.Tifrunner.gnm1.ann1.CY1II1 Arachis hypogaea HOM05D001930 ORTHO05D001345 5.2e-07 60.1 157 34.4
CSS0007963 Camellia sinensis var. sinensis HOM05D007981 ORTHO05D001345 5.2e-07 60.1 316 29.4
Gohir.A10G234900 Gossypium hirsutum HOM05D001930 ORTHO05D001345 5.2e-07 60.1 179 34.1
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 5.2e-07 60.1 168 34.5
VMungo1127G1819 Vigna mungo HOM05D007981 ORTHO05D001345 5.2e-07 60.1 283 31.4
Nitab4.5_0008493g0010 Nicotiana tabacum HOM05D001930 ORTHO05D001345 6.8e-07 59.7 152 34.9
AUR62012234 Chenopodium quinoa HOM05D001930 ORTHO05D001345 8.9e-07 59.3 166 31.3
Ca_05952_v3 Cicer arietinum L. HOM05D001930 ORTHO05D001345 8.9e-07 59.3 161 36.6
DCAR_011804 Daucus carota HOM05D001930 ORTHO05D001345 8.9e-07 59.3 167 31.7
Dinv03280 Davidia involucrata HOM05D007981 ORTHO05D001345 8.9e-07 59.3 62 53.2
Lj3A954T67 Lonicera japonica HOM05D001930 ORTHO05D001345 8.9e-07 59.3 93 38.7
Nn2g13688 Nelumbo nucifera HOM05D001930 ORTHO05D001345 8.9e-07 59.3 350 30.3
Nitab4.5_0004338g0070 Nicotiana tabacum HOM05D001930 ORTHO05D001345 8.9e-07 59.3 180 31.7
Ah.16g103400 Amaranthus hybridus HOM05D001930 ORTHO05D001345 1.2e-06 58.9 156 33.3
PGSC0003DMG400042123 Solanum tuberosum HOM05D007981 ORTHO05D001345 1.2e-06 58.9 312 30.4
HPP92_006184 Vanilla planifolia HOM05D003830 ORTHO05D004446 1.2e-06 58.9 149 35.6
Medtr7g068220 Medicago truncatula HOM05D001930 ORTHO05D001345 1.5e-06 58.5 176 35.2
SEGI_29321 Sequoiadendron giganteum HOM05D001930 ORTHO05D001345 1.5e-06 58.5 151 34.4
Cc02_g06660 Coffea canephora HOM05D001930 ORTHO05D001345 2.6e-06 57.8 149 32.2
Haze_20991 Corylus avellana HOM05D001930 ORTHO05D001345 2.6e-06 57.8 154 32.5
ECA233G1150 Erigeron canadensis HOM05D001930 ORTHO05D001345 2.6e-06 57.8 125 34.4
Migut.F00675 Erythranthe guttata HOM05D001930 ORTHO05D001345 2.6e-06 57.8 483 25.9
Phvul.008G105200 Phaseolus vulgaris HOM05D001930 ORTHO05D001345 2.6e-06 57.8 93 46.2
Duzib128G0280 Durio zibethinus HOM05D001930 ORTHO05D001345 3.4e-06 57.4 188 33.0
Sabra16G0110800 Salix brachista HOM05D001930 ORTHO05D001345 3.4e-06 57.4 96 42.7
Actinidia19656 Actinidia chinensis HOM05D007981 ORTHO05D001345 4.4e-06 57.0 459 26.4
CDE03G0399 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 4.4e-06 57.0 83 39.8
SEGI_04024 Sequoiadendron giganteum HOM05D001930 ORTHO05D001345 4.4e-06 57.0 150 34.0
CiPaw.02G191500 Carya illinoinensis HOM05D001930 ORTHO05D001345 5.8e-06 56.6 150 33.3
ClCG01G001160 Citrullus lanatus HOM05D007981 ORTHO05D001345 5.8e-06 56.6 363 30.3
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 7.5e-06 56.2 164 32.3
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 7.5e-06 56.2 159 34.0
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 7.5e-06 56.2 157 31.2
Actinidia29110 Actinidia chinensis HOM05D001930 ORTHO05D001345 9.8e-06 55.8 106 34.9
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 9.8e-06 55.8 157 31.8
PGSC0003DMG401027184 Solanum tuberosum HOM05D001930 ORTHO05D001345 9.8e-06 55.8 73 46.6


User provided reference genes

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