Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.7e-112 408.7 205 100.0
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 9.1e-52 207.6 152 62.5
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.8e-50 202.2 157 62.4
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.1e-49 200.7 149 63.1
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.4e-49 200.3 157 61.8
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.4e-49 200.3 157 59.2
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.5e-49 198.4 178 56.2
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 7.2e-49 198.0 166 55.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 7.2e-49 198.0 159 61.6
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 9.4e-49 197.6 169 58.6
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 9.4e-49 197.6 171 59.1
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.2e-48 197.2 171 59.1
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.1e-48 196.4 173 57.8
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 2.7e-48 196.1 173 57.8
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 2.7e-48 196.1 158 62.0
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 2.7e-48 196.1 175 56.6
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 3.6e-48 195.7 157 58.6
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.6e-48 195.7 172 58.7
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 3.6e-48 195.7 154 61.0
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 6.1e-48 194.9 164 58.5
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 7.9e-48 194.5 153 59.5
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 7.9e-48 194.5 171 55.6
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 7.9e-48 194.5 153 58.8
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.0e-47 194.1 176 54.0
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.0e-47 194.1 152 58.6
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 1.0e-47 194.1 161 60.9
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 1.4e-47 193.7 176 56.8
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.4e-47 193.7 161 59.6
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.4e-47 193.7 153 59.5
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.8e-47 193.4 183 54.1
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 2.3e-47 193.0 153 60.1
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 2.3e-47 193.0 152 58.6
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 3.0e-47 192.6 153 58.8
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 3.9e-47 192.2 154 59.1
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.9e-47 192.2 171 57.3
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 3.9e-47 192.2 182 54.4
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 5.1e-47 191.8 153 58.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 6.7e-47 191.4 158 57.0
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 6.7e-47 191.4 146 64.4
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.1e-46 190.7 162 55.6
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.1e-46 190.7 165 57.6
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.5e-46 190.3 175 55.4
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 2.0e-46 189.9 153 58.8
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.6e-46 189.5 176 54.0
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 3.3e-46 189.1 143 65.0
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 4.4e-46 188.7 156 60.9
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 5.7e-46 188.3 156 60.3
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 5.7e-46 188.3 152 57.2
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 9.7e-46 187.6 176 54.0
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 9.7e-46 187.6 176 54.0
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.3e-45 187.2 153 58.2
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 1.7e-45 186.8 154 56.5
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.7e-45 186.8 171 56.7
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 3.7e-45 185.7 153 58.2
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 8.2e-45 184.5 172 55.2
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.1e-44 184.1 203 49.3
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.8e-44 183.3 152 53.9
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 2.4e-44 183.0 179 52.5
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.1e-44 182.6 177 51.4
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.1e-44 182.6 155 56.1
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 4.1e-44 182.2 167 57.5
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 6.9e-44 181.4 203 48.8
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 1.5e-43 180.3 152 57.2
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 2.0e-43 179.9 161 55.9
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 2.6e-43 179.5 185 49.7
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 3.4e-43 179.1 152 55.9
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 4.5e-43 178.7 178 51.1
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.0e-42 177.6 164 54.3
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 2.2e-42 176.4 192 51.6
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.8e-42 175.6 174 52.3
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.8e-42 175.6 152 55.3
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 5.0e-42 175.3 161 55.3
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.4e-41 173.7 159 54.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.9e-41 173.3 113 70.8
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 2.5e-41 172.9 143 58.7
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.2e-41 172.6 157 55.4
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 7.2e-41 171.4 167 55.1
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 9.4e-41 171.0 143 58.0
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.6e-40 170.2 167 52.1
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 2.3e-39 166.4 153 52.3
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 5.2e-39 165.2 159 50.3
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 8.8e-39 164.5 165 52.7
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.1e-36 157.5 187 46.0
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.8e-36 156.8 161 50.9
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 4.1e-36 155.6 138 56.5
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 5.3e-36 155.2 127 58.3
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 3.5e-35 152.5 126 57.9
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 7.7e-35 151.4 167 47.9
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 2.2e-34 149.8 154 49.4
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 5.0e-34 148.7 123 56.9
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 6.5e-34 148.3 125 54.4
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 8.5e-34 147.9 172 49.4
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.5e-33 147.1 171 48.0
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.5e-33 147.1 131 54.2
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 2.5e-33 146.4 125 54.4
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 7.2e-33 144.8 138 47.8
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 9.4e-33 144.4 125 53.6
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 9.4e-33 144.4 125 53.6
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-31 140.6 120 59.2
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 8.8e-31 137.9 119 52.9
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.8e-29 132.9 162 45.7
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.8e-29 132.9 119 55.5
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.1e-28 131.0 136 50.7
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.4e-28 130.6 112 54.5
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 8.3e-21 104.8 65 70.8
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 8.3e-21 104.8 162 38.3
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 8.3e-21 104.8 103 52.4
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-20 104.0 174 37.9
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.4e-20 104.0 174 37.9
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.2e-19 100.9 91 54.9
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 4.5e-19 99.0 56 76.8
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 7.7e-19 98.2 63 68.3
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.0e-18 97.8 109 42.2
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 6.5e-18 95.1 125 40.0
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.5e-17 93.2 91 51.6
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 5.5e-17 92.0 116 41.4
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.3e-15 86.7 99 43.4
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 5.2e-15 85.5 66 62.1
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 8.8e-15 84.7 94 47.9
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 3.4e-14 82.8 51 70.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 5.7e-14 82.0 98 41.8
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 7.5e-14 81.6 45 82.2
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.1e-12 76.3 40 87.5
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.0e-10 71.2 126 35.7
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.9e-10 69.7 63 50.8
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-08 64.3 91 41.8


User provided reference genes

Program Settings