Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 2.6e-289 998.0 510 100.0
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.3e-160 570.5 484 59.5
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.3e-160 570.5 484 60.1
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 5.0e-160 568.5 485 60.4
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.5e-159 567.0 486 60.3
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.3e-157 559.7 468 61.1
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 8.9e-157 557.8 478 59.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 8.9e-157 557.8 507 58.0
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.4e-156 555.4 468 60.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 5.7e-156 555.1 490 57.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 7.5e-156 554.7 485 59.2
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 7.5e-156 554.7 479 60.5
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 9.8e-156 554.3 525 56.4
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.3e-155 553.9 468 60.7
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 1.3e-155 553.9 526 56.5
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.7e-155 553.5 497 57.3
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 3.7e-155 552.4 482 59.3
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 8.3e-155 551.2 489 57.9
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.1e-154 550.8 487 56.7
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.4e-154 550.4 461 57.7
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.8e-154 550.1 461 60.1
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 4.1e-154 548.9 479 57.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 4.1e-154 548.9 507 57.4
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 5.4e-154 548.5 477 57.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 9.2e-154 547.7 492 57.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 2.0e-153 546.6 511 57.1
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 3.5e-153 545.8 491 58.5
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 4.6e-153 545.4 477 59.5
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.0e-153 545.0 503 57.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 1.3e-152 543.9 500 57.2
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.7e-152 543.5 481 58.2
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 3.0e-152 542.7 500 56.2
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 3.0e-152 542.7 464 58.8
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.9e-152 542.3 504 57.1
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 5.0e-152 542.0 504 55.2
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 5.0e-152 542.0 482 58.1
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 6.6e-152 541.6 578 50.9
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.1e-151 540.8 505 54.7
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.9e-151 540.0 477 58.1
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.9e-151 540.0 477 58.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.9e-151 540.0 486 58.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.5e-151 539.7 453 61.6
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 3.3e-151 539.3 487 57.9
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.5e-151 537.7 477 58.5
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.6e-150 537.0 478 58.6
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 2.1e-150 536.6 497 56.3
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 2.1e-150 536.6 508 56.5
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 2.8e-150 536.2 517 55.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.7e-150 535.4 477 58.3
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 4.7e-150 535.4 487 56.1
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.7e-150 535.4 460 60.4
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 8.0e-150 534.6 489 56.6
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.1e-149 534.3 482 56.4
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-149 534.3 488 57.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.4e-149 533.9 507 55.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 4.0e-149 532.3 500 55.2
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 4.0e-149 532.3 486 57.0
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 6.8e-149 531.6 494 56.9
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.5e-148 530.4 506 56.3
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.0e-148 530.0 487 56.5
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 2.0e-148 530.0 480 56.2
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.6e-148 529.6 477 57.7
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 3.4e-148 529.3 492 55.5
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.3e-147 527.3 483 58.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 2.2e-147 526.6 534 53.2
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.7e-147 525.8 500 56.0
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 4.9e-147 525.4 456 58.1
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 8.3e-147 524.6 492 56.5
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.4e-146 523.9 509 55.2
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 4.1e-146 522.3 512 53.7
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.1e-146 522.3 468 57.9
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.0e-146 521.5 493 55.2
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 9.2e-146 521.2 496 54.2
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 9.2e-146 521.2 496 54.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.2e-145 520.8 480 57.3
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.6e-145 520.4 505 54.9
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 3.5e-145 519.2 479 55.5
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 3.5e-145 519.2 479 55.5
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.5e-145 519.2 484 55.4
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 7.8e-145 518.1 489 55.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-144 516.9 507 53.5
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 3.0e-144 516.2 453 57.0
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 8.6e-144 514.6 455 57.6
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.5e-143 513.8 461 57.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 3.3e-143 512.7 504 55.4
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 4.3e-143 512.3 497 54.5
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 9.5e-143 511.1 468 56.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.6e-140 503.1 427 60.2
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.7e-139 500.4 506 53.6
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 7.8e-137 491.5 437 56.5
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.3e-136 490.7 437 56.8
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 5.2e-133 478.8 553 49.7
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 1.6e-129 467.2 482 53.7
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.3e-127 458.4 455 53.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 5.8e-124 448.7 479 50.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 8.4e-123 444.9 375 58.1
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.4e-122 444.1 489 49.7
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.4e-122 444.1 424 55.2
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.1e-122 441.8 488 50.8
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 1.2e-121 441.0 480 51.2
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-118 430.3 499 48.5
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-117 427.6 398 56.8
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 5.8e-116 422.2 488 49.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.1e-98 364.8 365 54.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.8e-91 339.7 245 67.8
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 3.8e-91 339.7 245 67.8
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 5.0e-91 339.3 266 61.7
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.3e-86 324.7 350 50.0
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.2e-86 323.9 231 66.2
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.1e-82 311.6 340 48.5
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 2.9e-75 287.0 200 67.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 6.5e-75 285.8 201 66.7
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.4e-74 284.6 254 57.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-73 281.6 304 48.4
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.1e-69 268.5 305 51.5
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 7.5e-63 245.7 188 61.2
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 2.8e-62 243.8 186 64.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 7.2e-58 229.2 281 48.4
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.1e-57 227.6 246 49.6
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 8.0e-57 225.7 178 62.9
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.2e-56 223.0 225 54.2
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.1e-53 213.4 223 52.0
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.3e-51 207.6 227 49.3
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 4.2e-50 203.4 231 48.1
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.5e-50 203.0 162 60.5
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-39 168.3 168 54.2
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 7.5e-39 166.0 181 49.2
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 3.7e-38 163.7 435 27.8
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.2e-32 143.3 156 46.2
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 6.4e-30 136.3 500 29.4
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.1e-29 135.6 160 45.0
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.3e-24 117.9 169 42.6
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.3e-19 101.3 278 32.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-17 95.1 232 32.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-17 95.1 132 44.7
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 4.7e-17 93.6 54 75.9
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.4e-14 83.2 66 63.6
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 6.0e-12 76.6 166 32.5
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.1e-11 73.6 110 38.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 6.2e-09 66.6 49 71.4
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.6e-07 61.2 59 49.2
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.8e-07 60.1 82 42.7


User provided reference genes

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