Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 0.0e+00 1091.3 559 100.0
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 5.6e-112 409.1 571 46.8
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 1.0e-105 388.3 429 52.7
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.3e-105 387.1 595 42.9
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 1.8e-102 377.5 591 42.6
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 1.2e-101 374.8 526 44.7
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.5e-101 374.4 524 45.2
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 1.7e-100 370.9 392 53.6
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.8e-100 369.8 432 49.3
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.1e-99 368.2 477 46.1
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 7.1e-99 365.5 382 52.4
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.6e-98 364.4 363 53.7
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 6.0e-98 362.5 519 44.9
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 2.3e-97 360.5 601 40.6
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 3.0e-97 360.1 604 39.4
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 3.0e-97 360.1 398 51.3
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 5.1e-97 359.4 386 52.6
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 8.7e-97 358.6 531 43.7
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 2.5e-96 357.1 526 43.2
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 3.3e-96 356.7 599 41.4
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 4.3e-96 356.3 528 42.0
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 5.6e-96 355.9 523 43.4
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 7.3e-96 355.5 519 44.5
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 1.3e-95 354.8 462 47.0
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 1.3e-95 354.8 529 43.1
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 1.3e-95 354.8 473 46.5
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 3.6e-95 353.2 388 52.1
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 3.6e-95 353.2 384 51.6
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 1.8e-94 350.9 529 44.0
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 4.0e-94 349.7 498 44.8
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 4.0e-94 349.7 498 44.8
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 4.0e-94 349.7 381 52.5
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 4.0e-94 349.7 455 47.3
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 6.9e-94 349.0 515 44.7
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 1.2e-93 348.2 498 44.6
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.5e-93 347.8 385 51.4
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 7.6e-93 345.5 472 44.7
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 7.6e-93 345.5 517 44.1
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 9.9e-93 345.1 509 42.4
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.3e-92 344.7 391 50.6
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.3e-92 344.7 385 50.6
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 3.8e-92 343.2 473 44.0
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 1.1e-91 341.7 604 37.4
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 1.4e-91 341.3 384 51.0
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 1.9e-91 340.9 521 43.8
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 2.4e-91 340.5 407 48.6
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 4.2e-91 339.7 384 50.8
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 4.2e-91 339.7 452 44.9
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 5.4e-91 339.3 526 41.3
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 5.4e-91 339.3 506 44.1
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 7.1e-91 339.0 487 44.8
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 9.3e-91 338.6 372 50.8
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 1.2e-90 338.2 527 42.1
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.2e-90 338.2 453 47.2
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 2.1e-90 337.4 453 46.6
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 4.6e-90 336.3 374 50.3
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 7.8e-90 335.5 543 41.3
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 1.0e-89 335.1 418 46.4
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 3.9e-89 333.2 383 48.3
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 5.1e-89 332.8 383 48.0
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 5.1e-89 332.8 600 38.7
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 6.6e-89 332.4 507 42.0
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 6.6e-89 332.4 520 42.5
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 1.1e-88 331.6 444 45.9
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 1.1e-88 331.6 383 48.3
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.1e-88 331.6 410 48.5
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.5e-88 331.3 560 40.2
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.9e-88 330.9 493 44.2
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 3.3e-88 330.1 388 49.2
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.3e-88 329.7 523 41.3
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 5.6e-88 329.3 523 41.9
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 7.3e-88 328.9 378 49.2
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 7.3e-88 328.9 543 41.1
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 3.6e-87 326.6 382 48.4
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 3.6e-87 326.6 373 49.3
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 1.4e-86 324.7 456 45.6
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.1e-86 323.6 375 50.1
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 5.3e-86 322.8 473 41.9
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 9.0e-86 322.0 374 48.4
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 2.0e-85 320.9 386 49.5
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 2.6e-85 320.5 446 45.3
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 2.6e-85 320.5 342 51.5
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.4e-85 320.1 386 47.4
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 4.5e-85 319.7 387 47.5
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 4.5e-85 319.7 383 46.7
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 4.5e-85 319.7 383 46.7
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 4.5e-85 319.7 445 45.6
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 5.8e-85 319.3 517 42.6
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 9.9e-85 318.5 470 42.6
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.7e-84 317.8 427 44.0
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.9e-84 316.2 374 49.5
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 8.4e-84 315.5 381 48.0
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 8.4e-84 315.5 334 51.8
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 1.4e-83 314.7 330 50.3
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 2.4e-83 313.9 556 37.2
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 2.1e-82 310.8 368 48.1
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 4.6e-82 309.7 354 47.2
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 7.9e-82 308.9 482 40.9
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 7.9e-82 308.9 378 46.8
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 3.0e-81 307.0 386 47.4
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.1e-80 305.1 431 43.2
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 3.3e-80 303.5 382 47.4
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 4.3e-80 303.1 314 50.6
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.1e-79 300.8 385 44.4
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 3.7e-79 300.1 455 41.5
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 1.8e-78 297.7 367 46.6
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.8e-78 297.7 340 50.3
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 4.5e-77 293.1 392 45.2
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.7e-76 291.2 401 43.4
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 2.2e-76 290.8 533 38.1
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 1.9e-75 287.7 412 41.3
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 1.9e-75 287.7 435 40.7
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 1.9e-75 287.7 412 41.3
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 3.2e-75 287.0 441 42.9
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 5.5e-75 286.2 413 41.2
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 2.1e-74 284.3 440 40.5
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 6.0e-74 282.7 388 43.6
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 2.8e-71 273.9 407 42.0
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 6.2e-71 272.7 339 46.3
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 5.3e-70 269.6 381 42.8
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 1.4e-67 261.5 321 47.0
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.9e-67 261.2 375 43.7
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 7.9e-66 255.8 444 38.1
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.1e-62 245.4 405 39.0
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 6.9e-62 242.7 550 35.6
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.1e-59 235.3 308 48.4
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 7.2e-59 232.6 321 42.4
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.4e-54 218.4 295 44.1
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 7.7e-53 212.6 353 39.4
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 2.2e-52 211.1 387 39.8
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 6.5e-52 209.5 355 38.0
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.1e-51 208.8 258 49.6
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.8e-49 201.4 358 36.3
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.8e-47 194.1 227 50.2
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 3.7e-47 193.7 247 44.9
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.1e-43 182.2 308 39.6
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 6.7e-41 172.9 157 56.1
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 2.3e-33 147.9 285 38.2
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.4e-30 138.7 403 31.5
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.6e-29 135.2 383 31.3
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 2.7e-29 134.4 510 29.0
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 1.5e-27 128.6 170 49.4
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 7.2e-27 126.3 239 34.7
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 1.2e-26 125.6 166 48.8
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 3.7e-23 114.0 202 38.1
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 2.7e-21 107.8 393 28.2
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 8.6e-20 102.8 151 49.0
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 1.5e-16 92.0 223 33.6
CDE03G0290 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.2e-10 72.4 201 28.4
SEGI_27964 Sequoiadendron giganteum HOM05D002617 ORTHO05D006076 5.8e-08 63.5 51 56.9


User provided reference genes

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