Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 7.8e-244 846.7 414 100.0
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 5.3e-208 727.6 397 91.9
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 3.5e-127 459.1 311 70.4
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 5.0e-126 455.3 327 67.6
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.3e-125 452.6 311 69.8
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 4.3e-125 452.2 317 67.8
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 9.5e-125 451.1 309 69.9
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.6e-124 450.3 320 68.4
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 2.8e-124 449.5 327 67.0
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 6.2e-124 448.4 314 68.2
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.0e-123 447.6 309 69.6
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 1.4e-123 447.2 320 67.8
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.8e-123 446.8 322 64.9
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.8e-123 446.8 311 68.5
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 1.8e-123 446.8 311 68.2
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 3.1e-123 446.0 311 68.5
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 4.0e-123 445.7 311 68.5
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 4.0e-123 445.7 378 58.5
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 5.2e-123 445.3 321 67.0
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 5.2e-123 445.3 311 68.2
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 6.8e-123 444.9 364 60.2
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 6.8e-123 444.9 311 69.5
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 6.8e-123 444.9 311 66.6
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 8.9e-123 444.5 424 56.1
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.5e-122 443.7 311 68.5
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.5e-122 443.7 311 68.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.5e-122 443.7 311 68.5
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 2.0e-122 443.4 311 68.2
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 2.0e-122 443.4 311 66.9
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 3.4e-122 442.6 321 66.4
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 4.4e-122 442.2 311 69.1
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 4.4e-122 442.2 317 65.3
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 1.3e-121 440.7 363 60.6
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.3e-121 440.7 330 64.5
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-121 440.7 311 69.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 2.9e-121 439.5 311 66.9
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 3.7e-121 439.1 395 57.5
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 4.9e-121 438.7 330 64.2
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 8.3e-121 438.0 311 65.6
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 1.1e-120 437.6 311 66.2
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.1e-120 437.6 311 67.2
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.9e-120 436.8 371 59.8
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.9e-120 436.8 328 65.2
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.9e-120 436.8 309 68.3
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.9e-120 436.8 311 67.2
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 1.9e-120 436.8 310 68.1
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.9e-120 436.8 311 66.2
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 2.4e-120 436.4 312 66.3
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 3.2e-120 436.0 313 67.1
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 3.2e-120 436.0 306 68.6
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 3.2e-120 436.0 306 68.6
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 3.2e-120 436.0 306 68.6
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 4.1e-120 435.6 306 68.6
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 5.4e-120 435.3 388 56.4
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 7.0e-120 434.9 312 65.4
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 7.0e-120 434.9 308 67.2
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 9.2e-120 434.5 310 66.8
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 9.2e-120 434.5 311 65.9
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.2e-119 434.1 325 65.2
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 1.2e-119 434.1 311 65.9
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.6e-119 433.7 370 57.8
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 2.7e-119 433.0 309 66.0
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 6.0e-119 431.8 311 64.6
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 6.0e-119 431.8 311 66.9
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 7.8e-119 431.4 335 63.6
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 7.8e-119 431.4 309 66.3
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 1.3e-118 430.6 310 65.5
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.3e-118 430.6 310 65.5
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.3e-118 430.6 311 67.5
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.3e-118 430.6 388 57.5
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.7e-118 430.3 310 65.2
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 1.7e-118 430.3 310 65.2
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.7e-118 430.3 310 65.2
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.7e-118 430.3 311 65.9
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.7e-118 430.3 311 66.6
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.9e-118 429.1 304 66.1
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 5.0e-118 428.7 314 65.9
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 5.0e-118 428.7 311 65.0
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 5.0e-118 428.7 311 64.6
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 6.6e-118 428.3 312 65.4
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 8.6e-118 427.9 311 66.2
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 8.6e-118 427.9 311 65.9
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 8.6e-118 427.9 330 61.8
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.1e-117 427.6 310 65.2
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.5e-117 427.2 304 65.8
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 2.5e-117 426.4 310 64.5
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 5.6e-117 425.2 324 63.6
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 5.6e-117 425.2 325 62.8
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 5.6e-117 425.2 391 56.3
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 7.3e-117 424.9 312 64.4
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 7.3e-117 424.9 379 57.5
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 9.5e-117 424.5 330 63.9
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 1.2e-116 424.1 312 64.7
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.6e-116 423.7 304 65.1
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 2.1e-116 423.3 319 64.3
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 2.8e-116 422.9 304 65.1
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.8e-116 422.9 313 65.5
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 3.6e-116 422.5 326 62.0
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 8.1e-116 421.4 313 64.9
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 8.1e-116 421.4 309 64.7
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.1e-115 421.0 326 61.7
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 1.8e-115 420.2 304 64.5
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 1.8e-115 420.2 304 64.5
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.8e-115 420.2 304 65.5
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.3e-115 419.9 309 64.4
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 2.3e-115 419.9 315 63.5
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.1e-115 419.5 304 65.1
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-115 419.1 304 65.1
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 4.0e-115 419.1 304 65.1
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 5.2e-115 418.7 391 55.5
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 1.2e-114 417.5 304 63.8
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.2e-114 417.5 323 64.1
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 2.0e-114 416.8 304 64.8
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 2.0e-114 416.8 304 64.8
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 8.3e-113 411.4 304 64.5
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.6e-111 407.1 335 59.7
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.1e-111 406.8 285 68.1
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.9e-110 402.5 304 63.2
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.9e-110 402.5 335 59.1
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 6.2e-108 395.2 287 64.1
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 2.6e-106 389.8 307 61.9
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.7e-105 387.1 311 62.1
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.4e-99 366.7 286 61.9
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 6.9e-99 365.2 299 58.2
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 6.0e-95 352.1 311 55.9
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 9.6e-93 344.7 306 53.9
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.6e-92 344.0 321 55.1
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 6.9e-91 338.6 304 52.6
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 9.9e-90 334.7 303 54.8
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 1.7e-89 334.0 252 63.9
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 7.4e-85 318.5 299 48.8
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 2.9e-81 306.6 213 68.1
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 1.6e-79 300.8 300 50.0
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.1e-72 278.1 325 43.4
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 7.4e-69 265.4 257 54.5
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.1e-63 245.7 249 53.4
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 2.5e-61 240.4 294 43.5
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 2.0e-58 230.7 297 39.7
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 7.4e-53 212.2 154 68.8
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 6.3e-36 156.0 135 56.3
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 1.0e-33 148.7 152 53.9
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 2.5e-32 144.1 163 48.5
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.3e-28 131.7 111 53.2
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.3e-28 129.4 128 48.4
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 7.0e-27 125.9 128 55.5
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 4.2e-24 116.7 75 62.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 9.8e-21 105.5 64 73.4
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.3e-17 95.1 82 52.4
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 2.8e-15 87.4 100 50.0
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 1.5e-13 81.6 41 87.8


User provided reference genes

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