Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.3e-227 792.7 390 100.0
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 1.5e-108 397.1 392 52.6
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 1.2e-105 387.5 395 52.2
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.1e-105 386.7 381 55.6
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 2.7e-105 386.3 398 51.0
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 2.7e-105 386.3 398 51.0
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 2.7e-105 386.3 398 51.0
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 6.0e-105 385.2 381 55.1
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 5.1e-104 382.1 387 51.9
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 6.7e-104 381.7 352 53.7
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 5.6e-103 378.6 364 51.6
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 4.8e-102 375.6 395 49.4
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 6.2e-102 375.2 396 50.5
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 1.1e-101 374.4 389 50.4
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 1.8e-101 373.6 328 55.5
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 4.0e-101 372.5 377 52.5
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 3.4e-100 369.4 394 47.2
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 3.4e-100 369.4 406 49.3
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 5.8e-100 368.6 400 47.5
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 1.0e-99 367.9 268 65.3
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 1.3e-99 367.5 396 51.3
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 2.2e-99 366.7 398 48.5
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 2.2e-99 366.7 290 59.7
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 3.8e-99 365.9 399 50.6
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 4.9e-99 365.5 395 49.6
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 6.5e-99 365.2 398 48.7
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 8.4e-99 364.8 280 60.0
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.9e-98 363.6 397 51.4
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 2.5e-98 363.2 377 50.4
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 2.5e-98 363.2 403 47.1
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 3.2e-98 362.8 346 54.3
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 4.2e-98 362.5 402 48.8
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 4.2e-98 362.5 402 48.8
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 4.2e-98 362.5 375 51.2
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 5.5e-98 362.1 402 48.3
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 5.5e-98 362.1 392 49.2
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 9.3e-98 361.3 393 48.1
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.2e-97 360.9 290 58.6
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 1.6e-97 360.5 401 49.6
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 2.1e-97 360.1 403 47.9
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 2.1e-97 360.1 283 60.1
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 2.1e-97 360.1 398 48.7
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.7e-97 359.8 250 68.0
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 3.5e-97 359.4 349 54.2
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 4.6e-97 359.0 402 48.0
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 4.6e-97 359.0 397 48.9
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 4.6e-97 359.0 395 48.6
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 6.0e-97 358.6 345 53.6
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 1.0e-96 357.8 394 49.2
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 1.3e-96 357.5 402 47.3
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 1.8e-96 357.1 400 49.5
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 2.3e-96 356.7 408 48.5
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 2.3e-96 356.7 345 53.6
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 2.3e-96 356.7 341 53.1
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 3.0e-96 356.3 395 49.4
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 3.9e-96 355.9 413 47.5
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 3.9e-96 355.9 414 46.9
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 5.1e-96 355.5 404 48.3
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 8.7e-96 354.8 403 47.6
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 8.7e-96 354.8 395 48.1
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 1.5e-95 354.0 377 49.3
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 1.9e-95 353.6 410 47.1
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 2.5e-95 353.2 402 48.8
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 2.5e-95 353.2 392 49.7
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 3.3e-95 352.8 283 59.4
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 7.4e-95 351.7 402 46.8
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 1.3e-94 350.9 401 47.9
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 1.3e-94 350.9 394 48.7
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 1.6e-94 350.5 399 48.6
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 2.1e-94 350.1 368 50.3
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 2.1e-94 350.1 393 47.6
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 2.1e-94 350.1 341 51.9
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 2.8e-94 349.7 350 49.7
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 2.8e-94 349.7 396 48.0
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 2.8e-94 349.7 408 47.1
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 4.8e-94 349.0 396 47.5
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 4.8e-94 349.0 344 51.7
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 4.8e-94 349.0 392 48.2
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 8.2e-94 348.2 269 63.2
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 1.1e-93 347.8 388 45.9
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 1.1e-93 347.8 405 47.2
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 1.1e-93 347.8 396 47.5
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 1.4e-93 347.4 268 61.9
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.4e-93 347.4 351 51.9
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 1.8e-93 347.1 392 48.2
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 2.4e-93 346.7 398 47.2
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 2.4e-93 346.7 358 50.0
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 2.4e-93 346.7 377 50.4
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 3.1e-93 346.3 268 60.4
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 4.1e-93 345.9 401 47.4
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 5.3e-93 345.5 393 48.3
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 5.3e-93 345.5 394 47.0
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 5.3e-93 345.5 401 46.4
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 9.0e-93 344.7 267 60.7
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 9.0e-93 344.7 267 60.7
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 1.2e-92 344.4 386 49.0
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 1.5e-92 344.0 268 61.9
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 2.6e-92 343.2 396 47.0
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 3.4e-92 342.8 395 47.6
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 4.5e-92 342.4 388 47.2
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 7.6e-92 341.7 290 56.9
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 5.0e-91 339.0 397 45.8
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 6.5e-91 338.6 397 48.4
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 8.4e-91 338.2 353 49.0
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 1.4e-90 337.4 374 48.4
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 5.5e-90 335.5 402 46.5
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 1.6e-89 334.0 224 69.6
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 2.7e-89 333.2 342 50.3
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 2.7e-89 333.2 342 50.3
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 3.5e-89 332.8 268 59.7
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 1.0e-88 331.3 402 45.8
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 3.0e-88 329.7 283 54.8
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 8.7e-88 328.2 395 46.3
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 1.1e-87 327.8 251 63.3
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 1.5e-87 327.4 409 44.5
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.5e-87 327.4 268 59.3
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 5.7e-87 325.5 402 44.5
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 9.7e-87 324.7 395 44.6
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 1.3e-86 324.3 272 57.7
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 2.2e-86 323.6 350 47.1
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 4.8e-86 322.4 418 44.5
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 8.2e-86 321.6 406 45.8
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 1.1e-85 321.2 402 45.3
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 4.1e-85 319.3 400 44.8
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 5.3e-85 318.9 410 44.9
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 1.2e-84 317.8 413 44.3
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 1.5e-84 317.4 407 44.0
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 1.5e-84 317.4 410 44.6
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 3.4e-84 316.2 414 44.4
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 3.4e-84 316.2 403 43.9
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 1.0e-83 314.7 420 45.5
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 2.2e-83 313.5 272 55.9
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 3.6e-81 306.2 402 42.3
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 1.0e-80 304.7 389 41.9
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.4e-80 304.3 355 47.6
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.0e-80 303.1 277 52.7
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 5.1e-80 302.4 292 51.7
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 8.8e-80 301.6 276 53.6
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 1.5e-79 300.8 248 58.1
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 6.9e-77 292.0 411 42.1
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 1.0e-75 288.1 290 47.6
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 2.5e-74 283.5 197 66.0
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 3.2e-74 283.1 404 42.6
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 3.6e-73 279.6 272 50.4
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 6.1e-73 278.9 203 63.5
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 2.6e-71 273.5 291 48.8
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 7.0e-69 265.4 271 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 5.0e-67 259.2 273 45.1
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.2e-65 254.6 237 53.2
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 4.7e-65 252.7 379 42.0
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 1.4e-64 251.1 201 59.2
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 2.6e-63 246.9 297 45.5
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 1.1e-61 241.5 226 55.3
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.1e-57 227.3 309 40.8
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.7e-57 226.9 148 70.3
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 4.4e-55 219.5 393 36.4
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 1.3e-51 208.0 273 40.7
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 9.4e-50 201.8 369 36.6
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 5.7e-47 192.6 123 72.4
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 4.5e-44 183.0 401 34.7
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 1.3e-43 181.4 142 61.3
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.8e-40 171.0 173 49.1
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 2.2e-38 164.1 239 38.5
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 4.3e-34 149.8 397 28.7
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 5.6e-34 149.4 150 53.3
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 2.1e-33 147.5 101 67.3
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 8.9e-32 142.1 109 61.5
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 4.9e-22 109.8 135 40.0
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 1.0e-19 102.1 130 44.6
CAN.G225.12 Capsicum annuum HOM05D003642 ORTHO05D004460 3.9e-19 100.1 82 59.8
Pp3c6_3550 Physcomitrium patens HOM05D003642 ORTHO05D004460 6.8e-16 89.4 181 30.4
CBR_g30491 Chara braunii HOM05D003642 ORTHO05D004460 1.3e-11 75.1 225 28.9
CBR_g46720 Chara braunii HOM05D000953 ORTHO05D000231 9.6e-10 68.9 220 26.4
CBR_g39359 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-09 68.6 229 28.8
Lalb_Chr19g0136571 Lupinus albus HOM05D003642 ORTHO05D004460 6.2e-09 66.2 49 67.3
CBR_g20295 Chara braunii HOM05D003642 ORTHO05D002554 1.4e-08 65.1 182 30.8
CBR_g30819 Chara braunii HOM05D003642 ORTHO05D004460 6.9e-08 62.8 242 27.7
CBR_g4114 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-07 60.5 51 58.8
CBR_g49970 Chara braunii HOM05D003642 ORTHO05D004460 4.4e-07 60.1 224 25.4
CBR_g32150 Chara braunii HOM05D003642 ORTHO05D002554 2.2e-06 57.8 56 50.0
CBR_g49425 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-06 57.8 53 49.1
Prupe.5G144500 Prunus persica HOM05D002416 ORTHO05D002554 4.9e-06 56.6 58 48.3
Ciclev10031575m.g Citrus clementina HOM05D002416 ORTHO05D002554 8.4e-06 55.8 58 48.3


User provided reference genes

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