Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 2.8e-64 248.4 124 100.0
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 1.5e-57 226.1 112 100.0
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 6.5e-29 131.0 135 57.0
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 8.5e-29 130.6 137 51.1
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 1.5e-28 129.8 135 56.3
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 4.2e-28 128.3 135 50.4
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 1.2e-27 126.7 140 50.7
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 1.6e-27 126.3 136 51.5
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 3.6e-27 125.2 141 51.1
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 4.7e-27 124.8 137 51.8
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 4.7e-27 124.8 131 49.6
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 4.7e-27 124.8 136 50.0
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 4.7e-27 124.8 137 51.8
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 8.0e-27 124.0 137 49.6
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 8.0e-27 124.0 137 49.6
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 1.0e-26 123.6 135 48.1
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 1.0e-26 123.6 137 48.9
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 1.4e-26 123.2 137 48.2
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.8e-26 122.9 134 50.7
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.3e-26 122.5 135 50.4
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 3.0e-26 122.1 135 49.6
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 4.0e-26 121.7 135 49.6
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 6.7e-26 120.9 135 49.6
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 6.7e-26 120.9 129 51.2
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 8.8e-26 120.6 135 46.7
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 8.8e-26 120.6 136 47.8
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 8.8e-26 120.6 128 50.0
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 8.8e-26 120.6 135 48.1
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 1.1e-25 120.2 127 52.0
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 1.5e-25 119.8 126 50.8
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 1.5e-25 119.8 135 45.9
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 2.0e-25 119.4 135 45.9
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 2.0e-25 119.4 126 48.4
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 2.6e-25 119.0 138 46.4
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 3.3e-25 118.6 140 47.1
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 3.3e-25 118.6 140 45.0
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 3.3e-25 118.6 122 50.8
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 4.4e-25 118.2 137 49.6
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 4.4e-25 118.2 137 49.6
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 4.4e-25 118.2 137 48.2
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 4.4e-25 118.2 133 48.1
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 4.4e-25 118.2 129 48.8
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 5.7e-25 117.9 135 47.4
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 7.5e-25 117.5 137 47.4
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 7.5e-25 117.5 132 50.0
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 7.5e-25 117.5 137 44.5
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 9.7e-25 117.1 137 46.0
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 9.7e-25 117.1 141 47.5
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 9.7e-25 117.1 135 44.4
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 1.3e-24 116.7 138 46.4
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 1.3e-24 116.7 137 46.7
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 1.7e-24 116.3 134 49.3
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 2.2e-24 115.9 135 46.7
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 2.8e-24 115.5 136 46.3
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 2.8e-24 115.5 125 48.0
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 2.8e-24 115.5 122 50.0
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 3.7e-24 115.2 136 46.3
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 4.8e-24 114.8 137 46.0
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 6.3e-24 114.4 147 49.7
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 6.3e-24 114.4 140 45.7
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 6.3e-24 114.4 135 50.4
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 8.2e-24 114.0 137 45.3
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 8.2e-24 114.0 137 45.3
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 1.4e-23 113.2 121 49.6
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 2.4e-23 112.5 137 46.0
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 3.1e-23 112.1 140 47.1
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 3.1e-23 112.1 140 45.0
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 3.1e-23 112.1 140 45.0
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 4.1e-23 111.7 137 45.3
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 4.1e-23 111.7 140 44.3
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 5.3e-23 111.3 137 43.1
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 9.1e-23 110.5 136 48.5
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 1.2e-22 110.2 129 48.1
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 1.2e-22 110.2 137 43.1
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.0e-22 109.4 144 45.1
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.0e-22 109.4 125 50.4
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 2.7e-22 109.0 140 44.3
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 2.7e-22 109.0 140 44.3
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 3.5e-22 108.6 138 43.5
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 3.5e-22 108.6 138 43.5
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 3.5e-22 108.6 138 43.5
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 4.5e-22 108.2 140 47.1
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 5.9e-22 107.8 133 46.6
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 7.7e-22 107.5 131 48.9
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 7.7e-22 107.5 130 47.7
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 1.0e-21 107.1 131 48.9
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 2.9e-21 105.5 141 44.7
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 2.9e-21 105.5 121 47.1
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 1.5e-20 103.2 139 41.7
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 3.2e-20 102.1 137 42.3
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 4.2e-20 101.7 141 44.7
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 2.7e-19 99.0 136 40.4
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 1.0e-18 97.1 173 34.1
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 1.0e-18 97.1 138 42.0
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 2.3e-18 95.9 103 50.5
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 4.0e-18 95.1 126 45.2
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 5.2e-18 94.7 115 47.8
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.2e-17 93.6 120 41.7
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 4.4e-17 91.7 115 44.3
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 1.7e-16 89.7 118 47.5
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 1.8e-15 86.3 137 39.4
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 4.1e-15 85.1 119 41.2
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 4.1e-15 85.1 141 39.7
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 7.0e-15 84.3 112 44.6
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 9.1e-15 84.0 137 37.2
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 2.2e-13 79.3 119 39.5
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 2.9e-13 79.0 142 38.0
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 2.9e-13 79.0 115 36.5
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 6.5e-13 77.8 118 39.0
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.9e-12 76.3 121 38.0
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 2.5e-12 75.9 115 40.0
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 3.2e-12 75.5 116 37.9
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 3.2e-12 75.5 116 37.9
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 1.2e-11 73.6 120 35.0
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.0e-10 70.5 136 39.0
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.4e-10 70.1 136 39.7
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 8.8e-10 67.4 97 38.1
Ah.06g188320 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.7e-08 62.0 41 65.9
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 1.1e-07 60.5 51 51.0
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 1.4e-07 60.1 96 42.7
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 5.4e-07 58.2 97 43.3
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 3.5e-06 55.5 119 27.7
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 3.5e-06 55.5 87 37.9
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 4.5e-06 55.1 105 35.2


User provided reference genes

Program Settings