Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1570.8 801 100.0
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1342.4 797 84.4
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1342.4 797 84.6
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1332.8 798 84.0
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1317.0 799 81.5
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1314.3 797 82.6
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1313.1 798 82.7
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1311.2 799 81.2
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1310.0 798 81.8
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1309.7 798 82.2
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1302.3 797 81.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1302.3 795 81.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1300.8 797 81.7
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1300.8 797 81.6
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1300.4 798 81.5
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1299.3 797 81.1
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1298.9 795 82.1
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1298.9 797 81.7
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1298.1 796 81.9
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1298.1 798 82.0
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1297.7 797 82.3
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1297.7 797 81.6
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1296.6 797 81.1
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1296.6 797 81.1
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1296.2 796 81.8
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1296.2 797 81.6
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1295.8 797 81.1
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1295.8 796 81.9
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1295.0 797 81.3
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1295.0 797 80.8
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1291.2 797 80.6
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1289.6 799 81.4
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1288.5 797 82.1
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1288.5 795 81.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1284.2 803 80.8
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1280.4 797 80.4
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1280.0 797 81.3
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1280.0 796 81.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1279.6 797 80.9
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1279.6 797 80.1
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1278.5 798 80.3
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1278.1 796 80.4
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1278.1 799 80.4
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1277.7 796 80.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1277.7 797 81.1
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1277.3 796 80.3
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1277.3 797 79.8
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1276.9 799 80.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1276.9 798 80.5
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1276.5 797 80.8
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1276.2 799 79.6
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1275.8 798 80.1
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1275.0 797 80.2
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1274.6 799 79.8
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1274.2 799 80.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1273.1 798 79.7
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1273.1 799 80.7
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1273.1 796 79.5
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1272.7 796 80.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1271.9 797 79.8
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1270.8 798 79.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1270.8 796 80.3
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1270.8 797 80.1
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1270.8 799 79.6
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1270.4 797 79.5
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1270.0 799 79.5
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1268.8 796 79.9
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1268.4 796 80.0
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1268.1 799 79.6
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1268.1 801 78.8
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1267.3 797 79.4
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1266.5 796 79.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1266.5 797 79.2
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1265.8 798 79.2
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1265.4 796 79.8
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1262.3 798 79.2
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1261.9 798 79.4
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1261.9 798 79.4
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1261.9 798 79.4
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1261.9 797 79.4
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1261.5 798 79.3
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1261.5 798 79.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1260.4 797 79.7
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1260.4 798 79.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1258.4 798 79.7
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1251.1 800 78.5
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1251.1 840 76.1
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1248.8 795 79.1
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1246.9 811 77.6
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1245.7 797 80.1
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1232.2 800 78.2
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1232.2 796 78.4
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1224.2 799 77.5
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1223.8 803 77.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1221.8 798 76.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1219.1 800 78.1
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1215.3 797 77.8
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1206.4 795 76.0
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1203.7 802 75.3
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1201.0 798 75.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1147.9 796 71.4
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1146.3 796 71.9
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1080.9 799 68.0
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 1.6e-309 1065.8 800 67.0
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 7.8e-309 1063.5 694 78.5
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 4.4e-296 1021.1 798 64.9
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 1.7e-295 1019.2 627 81.0
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 8.4e-295 1016.9 798 64.9
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 2.8e-290 1001.9 815 62.2
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.3e-268 929.9 576 82.6
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.4e-264 915.2 598 78.4
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 2.2e-263 912.5 573 79.4
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.4e-257 892.5 543 83.4
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 2.4e-233 812.8 827 50.5
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 3.7e-218 762.3 563 66.4
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.5e-206 723.8 422 82.9
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 1.1e-204 717.6 420 83.1
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.4e-203 712.6 601 64.7
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 6.1e-152 542.3 435 65.5
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.4e-140 503.8 292 82.5
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 5.9e-139 499.2 358 72.1
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 9.1e-124 448.7 376 61.4
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.5e-97 361.7 223 77.6
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.1e-95 355.5 223 76.2
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 6.6e-82 309.7 194 77.3
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 3.4e-54 217.6 168 70.8
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 7.1e-44 183.3 108 81.5
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.0e-42 179.5 112 73.2
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 7.4e-41 173.3 143 67.1
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 6.3e-40 170.2 112 79.5
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 6.7e-34 150.2 101 78.2
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 8.8e-34 149.8 108 75.0
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 3.7e-32 144.4 87 78.2
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.3e-29 136.0 95 73.7
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.3e-21 109.4 131 48.1
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.8e-21 107.8 131 46.6
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 2.3e-18 98.6 95 55.8
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 8.5e-13 80.1 51 76.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.1e-12 79.7 51 76.5
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 5.5e-12 77.4 51 76.5


User provided reference genes

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