Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.2e-103 379.8 190 100.0
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.3e-94 349.0 181 96.7
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.4e-67 258.1 181 68.0
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 9.2e-67 257.3 179 69.8
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.7e-66 255.8 181 69.1
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 4.6e-66 255.0 179 69.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.0e-65 253.8 181 68.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.0e-65 253.8 179 69.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.0e-65 253.8 179 69.3
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 3.0e-65 252.3 179 69.3
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 5.1e-65 251.5 181 65.7
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.1e-64 250.4 180 66.7
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.5e-64 250.0 181 64.6
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.9e-64 249.6 181 64.6
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.5e-64 249.2 179 68.7
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.3e-64 248.8 179 68.7
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 3.3e-64 248.8 181 66.9
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 3.3e-64 248.8 181 67.4
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 4.3e-64 248.4 181 64.6
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.3e-64 248.4 181 65.7
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 5.6e-64 248.1 181 66.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 5.6e-64 248.1 179 67.0
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 5.6e-64 248.1 181 68.5
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 7.3e-64 247.7 179 65.4
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 7.3e-64 247.7 181 64.1
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 9.6e-64 247.3 190 63.2
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 9.6e-64 247.3 179 68.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.2e-63 246.9 173 71.1
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.2e-63 246.9 181 68.0
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.6e-63 246.5 178 66.9
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.1e-63 246.1 179 64.8
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 2.8e-63 245.7 181 66.3
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 3.6e-63 245.4 181 65.2
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 3.6e-63 245.4 179 64.2
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.6e-63 245.4 183 66.1
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.6e-63 245.4 180 67.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.1e-62 243.8 179 64.8
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.1e-62 243.8 181 63.0
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.4e-62 243.4 181 63.0
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.8e-62 243.0 181 63.5
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.8e-62 243.0 176 67.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 3.1e-62 242.3 186 63.4
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 4.0e-62 241.9 179 65.4
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.2e-62 241.5 178 63.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 5.2e-62 241.5 183 63.9
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.2e-61 240.4 182 62.6
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 1.2e-61 240.4 181 65.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.5e-61 240.0 181 65.2
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.5e-61 240.0 179 65.9
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.5e-61 240.0 181 66.3
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.5e-61 240.0 181 66.3
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.0e-61 239.6 176 67.0
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.0e-61 239.6 181 63.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.6e-61 239.2 176 65.9
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.4e-61 238.8 179 63.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.4e-61 238.8 181 65.2
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 3.4e-61 238.8 181 65.7
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 4.4e-61 238.4 178 62.9
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 4.4e-61 238.4 180 61.7
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 4.4e-61 238.4 179 62.6
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 5.8e-61 238.0 162 68.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 9.9e-61 237.3 179 64.2
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 9.9e-61 237.3 179 63.1
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.3e-60 236.9 181 63.5
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.7e-60 236.5 179 63.1
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-60 236.1 179 64.2
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-60 236.1 179 64.2
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-60 236.1 179 64.2
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.2e-60 236.1 179 64.2
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 2.2e-60 236.1 179 64.2
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.9e-60 235.7 179 64.2
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.9e-60 235.7 179 63.1
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 2.9e-60 235.7 182 63.2
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.8e-60 235.3 171 67.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.8e-60 235.3 181 63.0
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.9e-60 235.0 179 64.2
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.4e-60 234.2 182 65.4
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.1e-59 233.8 162 67.3
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.4e-59 233.4 172 64.0
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.9e-59 233.0 181 60.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-59 233.0 179 62.6
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-59 233.0 179 62.6
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.4e-59 232.6 161 68.3
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 3.2e-59 232.3 200 58.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.2e-59 232.3 179 63.7
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-59 231.9 179 63.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 4.2e-59 231.9 179 63.7
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 7.1e-59 231.1 200 58.0
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 9.3e-59 230.7 179 62.0
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.3e-59 230.7 162 67.3
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-58 230.3 181 61.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.2e-58 230.3 179 62.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.6e-58 229.9 183 61.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.1e-58 229.6 179 62.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.7e-58 229.2 183 60.1
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-58 228.8 179 62.6
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 4.6e-58 228.4 181 61.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.6e-58 228.4 181 61.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.0e-57 227.3 162 67.3
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.0e-57 227.3 181 61.3
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.0e-57 227.3 179 63.1
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.3e-57 226.9 162 66.7
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-57 226.5 181 61.3
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.7e-57 226.5 181 61.3
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 8.7e-57 224.2 181 60.8
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 8.7e-57 224.2 162 63.6
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.5e-56 223.4 181 61.9
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-56 223.0 181 61.3
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.5e-56 222.6 180 60.6
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-55 220.3 181 60.8
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 2.8e-55 219.2 244 50.0
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 6.2e-55 218.0 178 63.5
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 2.4e-51 206.1 180 58.3
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 3.2e-51 205.7 155 64.5
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.1e-51 204.5 175 56.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.7e-50 202.6 161 60.2
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 5.1e-49 198.4 127 70.1
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.3e-48 194.5 162 53.7
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.1e-46 189.1 175 49.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 6.9e-46 188.0 165 52.1
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.6e-45 186.0 145 55.9
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.5e-45 185.3 127 68.5
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.2e-43 178.7 153 52.9
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 9.3e-35 151.0 151 43.7
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.5e-32 143.7 180 45.0
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.4e-30 137.1 168 38.1
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.8e-30 136.7 162 38.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.1e-30 135.6 156 40.4
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.9e-30 134.8 160 38.1
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-29 133.3 151 37.1
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-28 130.6 140 41.4
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-28 129.8 156 38.5
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-27 127.1 140 42.9
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-27 126.3 123 47.2
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.5e-26 122.5 137 42.3
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.3e-25 120.6 107 57.9
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-25 120.2 134 36.6
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.9e-25 119.0 131 42.7
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.7e-25 118.2 88 58.0
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.1e-22 109.4 177 35.6
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.5e-20 101.3 153 35.3
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.4e-19 100.5 181 36.5
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.2e-19 99.0 153 34.0
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.4e-19 97.8 161 29.2
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-18 97.1 180 27.2
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-18 97.1 153 34.0
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.6e-18 95.9 158 34.8
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 4.6e-18 95.5 179 35.2
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.2e-15 86.7 114 38.6
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 8.2e-15 84.7 75 50.7
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 5.3e-14 82.0 178 32.0
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 9.1e-14 81.3 55 67.3
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.0e-13 80.1 151 29.1
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.9e-12 76.3 62 53.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 2.9e-12 76.3 57 59.6
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 2.9e-12 76.3 89 44.9
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.9e-12 76.3 124 33.9
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 3.2e-11 72.8 91 39.6
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-09 67.4 110 35.5
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.4e-09 67.4 142 28.2
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.3e-09 66.6 157 27.4
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-08 64.3 123 30.1
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.6e-08 63.2 98 36.7
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-06 57.8 98 32.7


User provided reference genes

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