Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.7e-302 1040.4 536 100.0
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.7e-297 1024.6 536 98.5
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 1.3e-198 696.8 538 66.5
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 1.5e-191 673.3 538 64.9
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 2.2e-190 669.5 539 64.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 2.1e-188 662.9 541 63.6
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 2.1e-188 662.9 541 63.6
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 2.1e-188 662.9 539 63.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 1.0e-187 660.6 539 64.0
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 4.3e-186 655.2 541 62.5
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.6e-186 654.8 540 63.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 7.3e-186 654.4 539 62.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.2e-185 653.7 539 62.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 2.1e-185 652.9 541 62.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 2.8e-185 652.5 539 62.5
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 4.0e-184 648.7 541 61.6
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 4.0e-184 648.7 539 60.9
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.2e-183 647.1 539 61.8
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 7.6e-183 644.4 539 60.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.7e-182 643.3 547 61.6
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 1.7e-182 643.3 542 60.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 1.1e-181 640.6 540 61.5
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 1.1e-181 640.6 540 61.7
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 1.9e-181 639.8 541 61.0
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 2.4e-181 639.4 537 60.7
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 2.4e-181 639.4 540 61.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 7.1e-181 637.9 540 61.3
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 9.3e-181 637.5 540 60.9
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.6e-180 636.7 537 61.1
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 2.7e-180 636.0 543 61.9
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 7.8e-180 634.4 539 61.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 1.7e-179 633.3 540 61.5
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 2.3e-179 632.9 540 61.1
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 6.6e-179 631.3 542 62.5
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 1.5e-178 630.2 539 60.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.9e-178 629.8 539 60.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 3.3e-178 629.0 537 60.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 3.3e-178 629.0 543 60.4
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 1.6e-177 626.7 538 59.3
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 2.8e-177 625.9 536 59.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 3.6e-177 625.5 535 60.4
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 8.1e-177 624.4 512 60.9
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.0e-176 622.1 536 60.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 5.3e-176 621.7 540 58.0
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.5e-175 618.6 538 59.1
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 4.5e-175 618.6 539 59.4
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 7.6e-175 617.8 538 59.1
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 9.9e-175 617.5 538 58.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-174 617.1 538 58.7
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 3.8e-174 615.5 538 58.9
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 6.4e-174 614.8 537 58.5
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 6.4e-174 614.8 539 59.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.4e-174 614.4 538 58.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.4e-174 614.4 538 58.7
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 1.1e-173 614.0 538 59.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 1.4e-173 613.6 538 59.1
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.4e-173 613.6 538 58.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 1.9e-173 613.2 538 59.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.9e-173 613.2 538 59.1
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 1.9e-173 613.2 540 59.3
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.4e-173 612.8 538 58.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 4.2e-173 612.1 542 59.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.2e-173 612.1 538 58.6
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 4.2e-173 612.1 542 58.5
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 5.4e-173 611.7 538 59.1
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 7.1e-173 611.3 538 58.4
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 1.2e-172 610.5 538 58.9
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 2.7e-172 609.4 542 59.2
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 4.6e-172 608.6 542 59.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 7.9e-172 607.8 526 59.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 1.0e-171 607.4 541 58.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 1.0e-171 607.4 537 57.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 1.0e-171 607.4 539 57.9
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 3.9e-171 605.5 521 59.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 4.3e-170 602.1 543 58.9
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 5.6e-170 601.7 538 59.3
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 9.6e-170 600.9 538 58.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 2.8e-169 599.4 538 59.1
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 3.6e-169 599.0 539 57.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.4e-168 597.0 540 59.8
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 5.3e-168 595.1 521 59.1
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.2e-167 594.0 539 55.8
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 3.4e-167 592.4 548 57.5
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 3.4e-167 592.4 539 58.3
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 3.8e-166 589.0 511 59.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 3.2e-165 585.9 517 57.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 7.1e-165 584.7 539 57.9
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 5.1e-163 578.6 535 55.9
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 1.1e-162 577.4 542 56.1
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 9.6e-162 574.3 510 58.0
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 2.1e-161 573.2 540 56.3
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 3.4e-159 565.8 552 54.2
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 1.1e-157 560.8 542 55.4
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 5.5e-157 558.5 536 55.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 7.1e-157 558.1 537 55.3
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.7e-156 556.2 539 54.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.3e-154 549.3 539 55.7
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 1.9e-149 533.5 450 60.7
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 4.5e-143 512.3 486 58.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 2.5e-141 506.5 531 54.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.8e-137 493.0 538 51.3
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.5e-135 485.7 416 59.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 2.0e-130 470.3 537 49.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 1.0e-115 421.4 353 61.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 4.8e-113 412.5 354 59.3
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.2e-107 392.5 567 41.3
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.0e-103 380.6 565 41.4
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.7e-103 380.2 321 58.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.3e-101 372.1 493 44.0
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.8e-100 370.2 562 41.6
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.2e-99 365.9 494 43.5
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 7.5e-98 362.1 320 56.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.7e-95 353.6 494 42.3
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 3.0e-94 350.1 294 61.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-93 347.8 494 41.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.4e-90 336.3 297 57.9
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.7e-89 334.3 546 37.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 3.5e-87 326.6 308 53.9
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 2.7e-71 273.9 550 33.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 4.3e-69 266.5 219 61.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 8.4e-65 252.3 267 50.6
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-61 241.1 210 57.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.2e-57 227.6 187 64.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.8e-52 210.7 185 61.1
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.2e-47 195.3 438 31.7
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.8e-44 183.3 148 62.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 4.8e-44 183.3 148 62.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.5e-42 178.3 456 30.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.0e-34 151.4 173 51.4
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.1e-30 136.7 126 54.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.4e-24 118.6 95 62.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 3.7e-20 104.0 656 23.9
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.2e-16 89.7 480 24.4
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.7e-15 87.8 82 58.5
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 3.6e-15 87.4 78 57.7
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 9.7e-13 79.3 63 63.5
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 4.8e-12 77.0 72 54.2
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 6.3e-12 76.6 82 54.9
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.4e-11 75.5 314 26.4
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.1e-11 73.9 76 48.7
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 9.4e-08 62.8 52 59.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 9.4e-08 62.8 52 59.6


User provided reference genes

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