Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011199 Vanilla planifolia HOM05D002457 ORTHO05D005750 1.7e-148 529.3 251 100.0
HPP92_011193 Vanilla planifolia HOM05D002457 ORTHO05D005750 7.5e-133 477.2 256 89.8
HPP92_011163 Vanilla planifolia HOM05D002457 ORTHO05D005750 8.1e-79 297.7 136 100.0
Nn1g05429 Nelumbo nucifera HOM05D002457 ORTHO05D005750 6.1e-66 255.0 213 57.3
TAR381G1374 Trochodendron aralioides HOM05D002457 ORTHO05D005750 1.9e-64 250.0 254 50.0
Aqoxy6G00731 Aquilegia oxysepala HOM05D002457 ORTHO05D005750 1.1e-62 244.2 224 55.8
PSO210G3704 Papaver somniferum HOM05D002457 ORTHO05D005750 1.0e-60 237.7 237 47.7
PSO447G0244 Papaver somniferum HOM05D002457 ORTHO05D005750 1.3e-60 237.3 237 47.7
Dinv19118 Davidia involucrata HOM05D002457 ORTHO05D005750 2.2e-60 236.5 226 52.2
SGA_v2.0_scaffold28G11909 Striga asiatica HOM05D002457 ORTHO05D005750 3.8e-60 235.7 224 51.3
GSVIVG01009071001 Vitis vinifera HOM05D002457 ORTHO05D005750 3.8e-60 235.7 224 53.6
Atru.chr13.1133 Acer truncatum HOM05D002457 ORTHO05D005750 8.5e-60 234.6 225 52.9
Actinidia10339 Actinidia chinensis HOM05D002457 ORTHO05D005750 1.1e-59 234.2 225 51.1
CDE03G0287 Ceratophyllum demersum HOM05D002457 ORTHO05D005750 1.1e-59 234.2 223 52.0
Glyma.06G101600 Glycine max HOM05D002457 ORTHO05D005750 4.2e-59 232.3 237 47.7
MD08G1186800 Malus domestica HOM05D002457 ORTHO05D005750 4.2e-59 232.3 223 52.0
Sopen04g029500 Solanum pennellii HOM05D002457 ORTHO05D005750 5.5e-59 231.9 224 53.1
Thecc.08G103800 Theobroma cacao HOM05D002457 ORTHO05D005750 5.5e-59 231.9 239 51.9
Cfa013661 Carpinus fangiana HOM05D002457 ORTHO05D005750 7.2e-59 231.5 223 53.4
vmacro21299 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 7.2e-59 231.5 224 50.4
Dinv44797 Davidia involucrata HOM05D002457 ORTHO05D005750 9.4e-59 231.1 235 50.6
vmacro21245 Vaccinium macrocarpon HOM05D002457 ORTHO05D005750 9.4e-59 231.1 224 50.4
ATR0782G122 Amborella trichopoda HOM05D002457 ORTHO05D005750 1.2e-58 230.7 226 53.1
Solyc04g074490.3 Solanum lycopersicum HOM05D002457 ORTHO05D005750 1.6e-58 230.3 224 52.7
Oeu054770.1 Olea europaea HOM05D002457 ORTHO05D005750 2.1e-58 229.9 219 50.2
Manes.18G065400 Manihot esculenta HOM05D002457 ORTHO05D005750 2.7e-58 229.6 240 49.6
Haze_22295 Corylus avellana HOM05D002457 ORTHO05D005750 3.6e-58 229.2 218 53.2
Migut.N02884 Erythranthe guttata HOM05D002457 ORTHO05D005750 4.6e-58 228.8 224 50.9
Lj4C97T15 Lonicera japonica HOM05D002457 ORTHO05D005750 6.1e-58 228.4 214 51.4
Nitab4.5_0000786g0170 Nicotiana tabacum HOM05D002457 ORTHO05D005750 6.1e-58 228.4 224 52.2
Os03g0389900 Oryza sativa ssp. japonica HOM05D002457 ORTHO05D005750 6.1e-58 228.4 216 55.1
MD15G1372700 Malus domestica HOM05D002457 ORTHO05D005750 1.0e-57 227.6 223 52.0
Nitab4.5_0006196g0020 Nicotiana tabacum HOM05D002457 ORTHO05D005750 1.0e-57 227.6 224 52.2
Peaxi162Scf00030g01716 Petunia axillaris HOM05D002457 ORTHO05D005750 1.0e-57 227.6 222 53.6
CSS0003030 Camellia sinensis var. sinensis HOM05D002457 ORTHO05D005750 1.8e-57 226.9 225 51.1
TWI12G1349 Tripterygium wilfordii HOM05D002457 ORTHO05D005750 3.0e-57 226.1 240 49.2
Ciclev10000161m.g Citrus clementina HOM05D002457 ORTHO05D005750 3.9e-57 225.7 223 50.2
Psat5g051160 Pisum sativum HOM05D002457 ORTHO05D005750 5.1e-57 225.3 243 46.5
Phvul.009G032400 Phaseolus vulgaris HOM05D002457 ORTHO05D005750 1.1e-56 224.2 240 48.3
PGR042G2032 Punica granatum HOM05D002457 ORTHO05D005750 1.1e-56 224.2 229 49.3
EL10Ac1g01165 Beta vulgaris HOM05D002457 ORTHO05D005750 2.0e-56 223.4 228 50.9
QL12p037399 Quercus lobata HOM05D002457 ORTHO05D005750 2.5e-56 223.0 224 49.1
QL12p038698 Quercus lobata HOM05D002457 ORTHO05D005750 2.5e-56 223.0 224 49.1
Zm00001eb018970 Zea mays HOM05D002457 ORTHO05D005750 2.5e-56 223.0 224 50.0
RcHm_v2.0_Chr7g0243141 Rosa chinensis HOM05D002457 ORTHO05D005750 3.3e-56 222.6 223 48.9
RcHm_v2.0_Chr7g0243351 Rosa chinensis HOM05D002457 ORTHO05D005750 3.3e-56 222.6 223 48.9
Eucgr.F00367 Eucalyptus grandis HOM05D002457 ORTHO05D005750 7.4e-56 221.5 222 51.8
FvH4_5g36800 Fragaria vesca HOM05D002457 ORTHO05D005750 7.4e-56 221.5 223 49.8
MSTRG.22163 Avicennia marina HOM05D002457 ORTHO05D005750 9.7e-56 221.1 226 50.9
CANSAT54G2291 Cannabis sativa HOM05D002457 ORTHO05D005750 9.7e-56 221.1 224 48.2
Potri.002G099400 Populus trichocarpa HOM05D002457 ORTHO05D005750 9.7e-56 221.1 222 50.5
Medtr3g099370 Medicago truncatula HOM05D002457 ORTHO05D005750 1.7e-55 220.3 242 45.0
SalBow8G1618 Salvia bowleyana HOM05D002457 ORTHO05D005750 3.7e-55 219.2 239 46.4
DCAR_019216 Daucus carota HOM05D002457 ORTHO05D005750 4.8e-55 218.8 217 47.5
Ah.05g169750 Amaranthus hybridus HOM05D002457 ORTHO05D005750 6.3e-55 218.4 220 49.1
Lalb_Chr11g0065321 Lupinus albus HOM05D002457 ORTHO05D005750 6.3e-55 218.4 225 48.4
CAN.G970.12 Capsicum annuum HOM05D002457 ORTHO05D005750 8.2e-55 218.0 224 50.0
Aa31LG4G8280 Aethionema arabicum HOM05D002457 ORTHO05D005750 1.1e-54 217.6 215 52.6
Gohir.A01G132300 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.1e-54 217.6 241 46.1
C06p52240 Brassica napus HOM05D002457 ORTHO05D005750 1.4e-54 217.2 215 51.6
Lj1g0014547 Lotus japonicus HOM05D002457 ORTHO05D005750 1.4e-54 217.2 220 49.5
BcaB03g16003 Brassica carinata HOM05D002457 ORTHO05D005750 1.8e-54 216.9 218 48.6
A07p43570 Brassica napus HOM05D002457 ORTHO05D005750 2.4e-54 216.5 215 51.2
BolC6t40246H Brassica oleracea HOM05D002457 ORTHO05D005750 2.4e-54 216.5 215 51.2
BraA07t31869Z Brassica rapa HOM05D002457 ORTHO05D005750 2.4e-54 216.5 215 51.2
Prupe.1G521300 Prunus persica HOM05D002457 ORTHO05D005750 3.1e-54 216.1 223 47.5
TPR.G14216 Trifolium pratense HOM05D002457 ORTHO05D005750 3.1e-54 216.1 245 44.9
BcaC08g47405 Brassica carinata HOM05D002457 ORTHO05D005750 4.1e-54 215.7 215 51.2
Rhsim06G0078900 Rhododendron simsii HOM05D002457 ORTHO05D005750 4.1e-54 215.7 247 45.7
Cc10_g06810 Coffea canephora HOM05D002457 ORTHO05D005750 5.3e-54 215.3 220 50.0
SGA_v2.0_scaffold84G26485 Striga asiatica HOM05D002457 ORTHO05D005750 6.9e-54 214.9 247 46.2
Gohir.D01G115200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.2e-53 214.2 241 45.2
CiPaw.07G177900 Carya illinoinensis HOM05D002457 ORTHO05D005750 2.0e-53 213.4 223 50.2
Gorai.002G140900 Gossypium raimondii HOM05D002457 ORTHO05D005750 2.6e-53 213.0 241 45.2
Sp5g33400 Schrenkiella parvula HOM05D002457 ORTHO05D005750 2.6e-53 213.0 222 49.5
COL.COLO4_12026 Corchorus olitorius HOM05D002457 ORTHO05D005750 5.9e-53 211.8 218 49.5
BcaB05g25129 Brassica carinata HOM05D002457 ORTHO05D005750 2.9e-52 209.5 226 48.2
AT1G78280 Arabidopsis thaliana HOM05D002457 ORTHO05D005750 3.8e-52 209.1 220 48.6
Sabra02G0078000 Salix brachista HOM05D002457 ORTHO05D005750 5.0e-52 208.8 241 45.6
Thhalv10018079m.g Eutrema salsugineum HOM05D002457 ORTHO05D005750 6.5e-52 208.4 222 50.5
Hund26976 Selenicereus undatus HOM05D002457 ORTHO05D005750 6.5e-52 208.4 222 49.5
unitig_8.g3608 Utricularia gibba HOM05D002457 ORTHO05D005750 6.5e-52 208.4 224 47.3
CsaV3_2G029800 Cucumis sativus L. HOM05D002457 ORTHO05D005750 1.1e-51 207.6 223 48.0
Carub.0002s2518 Capsella rubella HOM05D002457 ORTHO05D005750 1.4e-51 207.2 223 47.5
THA.LOC104810709 Tarenaya hassleriana HOM05D002457 ORTHO05D005750 3.2e-51 206.1 214 50.9
MELO3C011038.2 Cucumis melo HOM05D002457 ORTHO05D005750 5.5e-51 205.3 226 49.1
HanXRQChr09g0250381 Helianthus annuus HOM05D002457 ORTHO05D005750 7.2e-51 204.9 212 47.6
CARHR071750 Cardamine hirsuta HOM05D002457 ORTHO05D005750 1.6e-50 203.8 222 47.3
arahy.Tifrunner.gnm1.ann1.Y876JP Arachis hypogaea HOM05D002457 ORTHO05D005750 2.1e-50 203.4 245 44.5
ClCG08G011220 Citrullus lanatus HOM05D002457 ORTHO05D005750 2.1e-50 203.4 223 45.3
arahy.Tifrunner.gnm1.ann1.H9D2WH Arachis hypogaea HOM05D002457 ORTHO05D005750 3.0e-49 199.5 245 44.5
Lsat_1_v5_gn_9_72780 Lactuca sativa HOM05D002457 ORTHO05D005750 3.0e-49 199.5 209 45.9
C02p35500 Brassica napus HOM05D002457 ORTHO05D005750 2.6e-48 196.4 222 47.7
AUR62027799 Chenopodium quinoa HOM05D002457 ORTHO05D005750 4.4e-48 195.7 216 45.4
AUR62018953 Chenopodium quinoa HOM05D002457 ORTHO05D005750 6.3e-47 191.8 214 43.9
Gohir.D05G227200 Gossypium hirsutum HOM05D002457 ORTHO05D005750 1.1e-46 191.0 236 46.2
FAN18G1557 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.8e-46 190.3 279 40.5
Gorai.009G234900 Gossypium raimondii HOM05D002457 ORTHO05D005750 1.8e-46 190.3 236 45.8
FAN08G0375 Fragaria x ananassa HOM05D002457 ORTHO05D005750 5.3e-46 188.7 279 39.8
Gohir.A05G224700 Gossypium hirsutum HOM05D002457 ORTHO05D005750 2.0e-45 186.8 236 45.3
Cpa.g.sc36.165 Carica papaya HOM05D002457 ORTHO05D005750 4.5e-45 185.7 151 60.3
SEGI_24064 Sequoiadendron giganteum HOM05D002457 ORTHO05D005750 2.1e-42 176.8 217 44.2
FAN13G1549 Fragaria x ananassa HOM05D002457 ORTHO05D005750 1.8e-41 173.7 277 38.6
MBI02_g27963_MAGBIO Magnolia biondii HOM05D002457 ORTHO05D005750 8.8e-41 171.4 141 60.3
BcaC03g15804 Brassica carinata HOM05D002457 ORTHO05D005750 2.0e-40 170.2 151 56.3
AL2G38630 Arabidopsis lyrata HOM05D002457 ORTHO05D005750 5.3e-38 162.2 220 42.7
ECA232G3235 Erigeron canadensis HOM05D002457 ORTHO05D005750 7.0e-38 161.8 190 44.7
FAN04G0153 Fragaria x ananassa HOM05D002457 ORTHO05D005750 2.0e-37 160.2 200 46.0
Cpa.g.sc36.164 Carica papaya HOM05D002457 ORTHO05D005750 2.5e-35 153.3 173 46.8
RcHm_v2.0_Chr7g0243001 Rosa chinensis HOM05D002457 ORTHO05D005750 3.0e-33 146.4 157 45.9
SMO351G0300 Selaginella moellendorffii HOM05D002457 ORTHO05D005750 1.7e-31 140.6 216 37.0
Sed0005289 Sechium edule HOM05D002457 ORTHO05D005750 6.3e-31 138.7 163 43.6
BolC2t09568H Brassica oleracea HOM05D002457 ORTHO05D005750 5.4e-30 135.6 174 43.7
Pp3c7_15150 Physcomitrium patens HOM05D002457 ORTHO05D005750 9.1e-30 134.8 225 33.3
Mapoly0027s0020 Marchantia polymorpha HOM05D002457 ORTHO05D005750 1.6e-29 134.0 227 34.8
Pp3c11_17580 Physcomitrium patens HOM05D002457 ORTHO05D005750 7.7e-29 131.7 221 32.1
AagrBONN_evm.TU.Sc2ySwM_228.4998 Anthoceros agrestis HOM05D002457 ORTHO05D005750 4.0e-25 119.4 214 32.7
A02p22110 Brassica napus HOM05D002457 ORTHO05D005750 7.7e-21 105.1 144 43.8
Sc23g0000320 Simmondsia chinensis HOM05D002457 ORTHO05D005750 1.5e-19 100.9 120 43.3
Ca_16043_v3 Cicer arietinum L. HOM05D002457 ORTHO05D005750 7.3e-19 98.6 145 36.6
Ca_14149_v3 Cicer arietinum L. HOM05D000298 ORTHO05D000553 7.8e-13 78.6 104 38.5
RcHm_v2.0_Chr7g0242991 Rosa chinensis HOM05D002457 ORTHO05D005750 1.0e-12 78.2 41 78.0
RcHm_v2.0_Chr7g0242931 Rosa chinensis HOM05D002457 ORTHO05D005750 7.3e-11 72.0 97 42.3
Glyma.04G100002 Glycine max HOM05D002457 ORTHO05D005750 9.2e-06 55.1 68 33.8


User provided reference genes

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