Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011159 Vanilla planifolia HOM05D000063 ORTHO05D431272 1.2e-52 209.5 102 100.0
HPP92_011176 Vanilla planifolia HOM05D000063 ORTHO05D006939 5.7e-47 190.7 96 96.9
HPP92_019273 Vanilla planifolia HOM05D000063 ORTHO05D006939 8.6e-19 97.1 95 53.7
Zm00001eb011560 Zea mays HOM05D000063 ORTHO05D006939 5.2e-16 87.8 92 51.1
HPP92_005839 Vanilla planifolia HOM05D000063 ORTHO05D006939 3.7e-14 81.6 87 49.4
HPP92_004118 Vanilla planifolia HOM05D000063 ORTHO05D006939 1.4e-13 79.7 99 43.4
Os03g0263300 Oryza sativa ssp. japonica HOM05D000063 ORTHO05D006939 2.4e-13 79.0 81 55.6
FAN15G2549 Fragaria x ananassa HOM05D000063 ORTHO05D006939 3.2e-13 78.6 78 53.8
HPP92_005847 Vanilla planifolia HOM05D000063 ORTHO05D006939 4.1e-13 78.2 75 53.3
Potri.002G086100 Populus trichocarpa HOM05D000063 ORTHO05D006939 9.2e-13 77.0 75 49.3
HanXRQChr11g0324491 Helianthus annuus HOM05D000063 ORTHO05D006939 1.2e-12 76.6 81 50.6
Duzib093G0593 Durio zibethinus HOM05D000063 ORTHO05D006939 1.6e-12 76.3 80 51.2
HPP92_004070 Vanilla planifolia HOM05D000063 ORTHO05D006939 1.6e-12 76.3 99 42.4
HPP92_027209 Vanilla planifolia HOM05D000063 ORTHO05D006939 1.6e-12 76.3 96 44.8
Hma1.2p1_0248F.1_g102030 Hydrangea macrophylla HOM05D000063 ORTHO05D006939 2.0e-12 75.9 75 53.3
MBI03_g05988_MAGBIO Magnolia biondii HOM05D000063 ORTHO05D006939 2.0e-12 75.9 87 48.3
Thecc.08G121400 Theobroma cacao HOM05D000063 ORTHO05D006939 2.0e-12 75.9 80 50.0
Dinv40391 Davidia involucrata HOM05D000063 ORTHO05D006939 3.5e-12 75.1 87 47.1
TAR376G0211 Trochodendron aralioides HOM05D000063 ORTHO05D006939 3.5e-12 75.1 98 43.9
Actinidia23065 Actinidia chinensis HOM05D000063 ORTHO05D006939 4.6e-12 74.7 82 51.2
Lj7P336T10 Lonicera japonica HOM05D000063 ORTHO05D006939 4.6e-12 74.7 80 51.2
Manes.18G075300 Manihot esculenta HOM05D000063 ORTHO05D006939 4.6e-12 74.7 75 50.7
GSVIVG01008901001 Vitis vinifera HOM05D000063 ORTHO05D006939 4.6e-12 74.7 84 48.8
COL.COLO4_12192 Corchorus olitorius HOM05D000063 ORTHO05D006939 6.0e-12 74.3 82 48.8
PSO170G3365 Papaver somniferum HOM05D000063 ORTHO05D006939 6.0e-12 74.3 75 49.3
PGR044G1484 Punica granatum HOM05D000063 ORTHO05D006939 6.0e-12 74.3 75 50.7
PSO782G3880 Papaver somniferum HOM05D000063 ORTHO05D006939 7.8e-12 73.9 75 48.0
VMungo1309G2683 Vigna mungo HOM05D000063 ORTHO05D006939 7.8e-12 73.9 72 52.8
Gohir.D06G043700 Gossypium hirsutum HOM05D000063 ORTHO05D006939 1.0e-11 73.6 75 50.7
Gorai.010G048800 Gossypium raimondii HOM05D000063 ORTHO05D006939 1.0e-11 73.6 75 50.7
Atru.chr13.1410 Acer truncatum HOM05D000063 ORTHO05D006939 1.3e-11 73.2 75 50.7
CSS0020262 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D006939 1.3e-11 73.2 87 43.7
ECA232G4255 Erigeron canadensis HOM05D000063 ORTHO05D006939 1.3e-11 73.2 82 47.6
Manes.02G161100 Manihot esculenta HOM05D000063 ORTHO05D006939 1.3e-11 73.2 101 41.6
Sabra05G0132200 Salix brachista HOM05D000063 ORTHO05D006939 1.3e-11 73.2 75 48.0
DCAR_014105 Daucus carota HOM05D000063 ORTHO05D006939 1.7e-11 72.8 72 52.8
TWI36G0962 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 1.7e-11 72.8 99 45.5
Duzib041G0179 Durio zibethinus HOM05D000063 ORTHO05D006939 2.3e-11 72.4 83 45.8
FAN20G2671 Fragaria x ananassa HOM05D000063 ORTHO05D006939 2.3e-11 72.4 78 51.3
Potri.005G175300 Populus trichocarpa HOM05D000063 ORTHO05D006939 2.3e-11 72.4 96 42.7
TAR628G1161 Trochodendron aralioides HOM05D000063 ORTHO05D006939 2.3e-11 72.4 75 49.3
FvH4_2g26540 Fragaria vesca HOM05D000063 ORTHO05D006939 3.9e-11 71.6 78 50.0
FAN24G0522 Fragaria x ananassa HOM05D000063 ORTHO05D006939 3.9e-11 71.6 78 50.0
FAN27G1014 Fragaria x ananassa HOM05D000063 ORTHO05D006939 3.9e-11 71.6 78 50.0
Glyma.04G251900 Glycine max HOM05D000063 ORTHO05D006939 3.9e-11 71.6 72 50.0
Gohir.A06G042900 Gossypium hirsutum HOM05D000063 ORTHO05D006939 3.9e-11 71.6 75 49.3
Gohir.D05G235900 Gossypium hirsutum HOM05D000063 ORTHO05D006939 3.9e-11 71.6 75 49.3
Gorai.009G244200 Gossypium raimondii HOM05D000063 ORTHO05D006939 3.9e-11 71.6 75 49.3
MD15G1353200 Malus domestica HOM05D000063 ORTHO05D006939 3.9e-11 71.6 75 52.0
TAR625G1273 Trochodendron aralioides HOM05D000063 ORTHO05D006939 3.9e-11 71.6 75 46.7
HPP92_013328 Vanilla planifolia HOM05D000063 ORTHO05D006939 3.9e-11 71.6 73 52.1
CSS0049058 Camellia sinensis var. sinensis HOM05D000063 ORTHO05D006939 5.0e-11 71.2 87 44.8
Oeu047937.1 Olea europaea HOM05D000063 ORTHO05D006939 5.0e-11 71.2 87 41.4
Oeu047938.1 Olea europaea HOM05D000063 ORTHO05D006939 5.0e-11 71.2 87 41.4
Phvul.009G122700 Phaseolus vulgaris HOM05D000063 ORTHO05D006939 5.0e-11 71.2 72 51.4
CiPaw.05G224400 Carya illinoinensis HOM05D000063 ORTHO05D006939 6.6e-11 70.9 84 46.4
Psat5g133360 Pisum sativum HOM05D000063 ORTHO05D006939 6.6e-11 70.9 86 45.3
RcHm_v2.0_Chr6g0295411 Rosa chinensis HOM05D000063 ORTHO05D006939 6.6e-11 70.9 75 52.0
HanXRQChr09g0254111 Helianthus annuus HOM05D000063 ORTHO05D006939 8.6e-11 70.5 80 47.5
Lj4P618T2 Lonicera japonica HOM05D000063 ORTHO05D006939 8.6e-11 70.5 87 43.7
MD08G1167600 Malus domestica HOM05D000063 ORTHO05D006939 8.6e-11 70.5 101 41.6
Aqoxy6G00166 Aquilegia oxysepala HOM05D000063 ORTHO05D006939 1.1e-10 70.1 87 47.1
Prupe.1G501500 Prunus persica HOM05D000063 ORTHO05D006939 1.1e-10 70.1 75 50.7
Ca_13583_v3 Cicer arietinum L. HOM05D000063 ORTHO05D006939 1.5e-10 69.7 72 51.4
Ciclev10000940m.g Citrus clementina HOM05D000063 ORTHO05D006939 1.5e-10 69.7 75 46.7
TWI12G0563 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 1.5e-10 69.7 75 46.7
TWI56G1233 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 1.5e-10 69.7 77 49.4
Gohir.A05G233500 Gossypium hirsutum HOM05D000063 ORTHO05D006939 1.9e-10 69.3 75 46.7
Lj1g0016752 Lotus japonicus HOM05D000063 ORTHO05D006939 1.9e-10 69.3 75 50.7
TWI56G1247 Tripterygium wilfordii HOM05D000063 ORTHO05D006939 1.9e-10 69.3 72 47.2
Lj1g0025317 Lotus japonicus HOM05D000063 ORTHO05D006939 2.5e-10 68.9 79 45.6
HPP92_002222 Vanilla planifolia HOM05D000063 ORTHO05D006939 2.5e-10 68.9 79 48.1
Medtr3g072710 Medicago truncatula HOM05D000063 ORTHO05D006939 3.3e-10 68.6 75 48.0
Nitab4.5_0009190g0010 Nicotiana tabacum HOM05D000063 ORTHO05D006939 3.3e-10 68.6 75 50.7
TPR.G19873 Trifolium pratense HOM05D000063 ORTHO05D006939 3.3e-10 68.6 75 48.0
Cpa.g.sc36.32 Carica papaya HOM05D000063 ORTHO05D006939 4.3e-10 68.2 75 49.3
Eucgr.L03490 Eucalyptus grandis HOM05D000063 ORTHO05D006939 4.3e-10 68.2 75 49.3
Lsat_1_v5_gn_4_164800 Lactuca sativa HOM05D000063 ORTHO05D006939 4.3e-10 68.2 75 48.0
Nitab4.5_0000193g0120 Nicotiana tabacum HOM05D000063 ORTHO05D006939 4.3e-10 68.2 75 48.0
Sabra02G0067500 Salix brachista HOM05D000063 ORTHO05D006939 4.3e-10 68.2 75 46.7
Glyma.06G110800 Glycine max HOM05D000063 ORTHO05D006939 5.6e-10 67.8 70 50.0
Rhsim06G0105300 Rhododendron simsii HOM05D000063 ORTHO05D006939 5.6e-10 67.8 87 43.7
HPP92_027210 Vanilla planifolia HOM05D000063 ORTHO05D006939 5.6e-10 67.8 83 48.2
Dinv27339 Davidia involucrata HOM05D000063 ORTHO05D006939 7.3e-10 67.4 75 48.0
SalBow7G1650 Salvia bowleyana HOM05D000063 ORTHO05D006939 9.5e-10 67.0 75 45.3
Solyc11g013150.1 Solanum lycopersicum HOM05D000063 ORTHO05D006939 9.5e-10 67.0 75 48.0
Sopen11g008200 Solanum pennellii HOM05D000063 ORTHO05D006939 9.5e-10 67.0 75 48.0
CAN.G918.1 Capsicum annuum HOM05D000063 ORTHO05D006939 1.2e-09 66.6 75 48.0
HanXRQChr15g0484601 Helianthus annuus HOM05D000063 ORTHO05D006939 1.6e-09 66.2 75 45.3
SalBow7G1974 Salvia bowleyana HOM05D000063 ORTHO05D006939 1.6e-09 66.2 75 45.3
Medtr5g058860 Medicago truncatula HOM05D000063 ORTHO05D006939 2.1e-09 65.9 75 45.3
PGSC0003DMG400012071 Solanum tuberosum HOM05D000063 ORTHO05D006939 2.1e-09 65.9 75 46.7
Eucgr.F03769 Eucalyptus grandis HOM05D000063 ORTHO05D006939 2.8e-09 65.5 78 47.4
Cfa015989 Carpinus fangiana HOM05D000063 ORTHO05D006939 3.6e-09 65.1 75 45.3
TPR.G8507 Trifolium pratense HOM05D000063 ORTHO05D006939 4.7e-09 64.7 73 46.6
Haze_00478 Corylus avellana HOM05D000063 ORTHO05D006939 1.8e-08 62.8 75 44.0
ATR0171G022 Amborella trichopoda HOM05D000063 ORTHO05D006939 2.3e-08 62.4 101 36.6
CANSAT25G1795 Cannabis sativa HOM05D000063 ORTHO05D006939 3.1e-08 62.0 78 44.9
Peaxi162Scf00650g00223 Petunia axillaris HOM05D000063 ORTHO05D006939 5.2e-08 61.2 77 44.2
Cfa015990 Carpinus fangiana HOM05D000063 ORTHO05D006939 1.2e-07 60.1 82 40.2
Haze_00477 Corylus avellana HOM05D000063 ORTHO05D006939 2.0e-07 59.3 101 38.6
Sed0023030 Sechium edule HOM05D000063 ORTHO05D006939 2.0e-07 59.3 77 45.5
Phvul.008G165200 Phaseolus vulgaris HOM05D000063 ORTHO05D006939 7.5e-07 57.4 75 41.3
VMungo0647G0062 Vigna mungo HOM05D000063 ORTHO05D006939 7.5e-07 57.4 75 41.3
ClCG00G002990 Citrullus lanatus HOM05D000063 ORTHO05D006939 2.9e-06 55.5 77 41.6
ClCG08G005520 Citrullus lanatus HOM05D000063 ORTHO05D006939 2.9e-06 55.5 77 41.6
MELO3C011591.2 Cucumis melo HOM05D000063 ORTHO05D006939 2.9e-06 55.5 77 41.6
CsaV3_6G003620 Cucumis sativus L. HOM05D000063 ORTHO05D006939 2.9e-06 55.5 77 41.6


User provided reference genes

Program Settings