Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.1e-177 625.5 308 100.0
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.0e-115 420.6 305 65.2
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 3.3e-114 415.6 307 63.8
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 1.2e-113 413.7 284 68.7
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.8e-113 412.5 302 64.9
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.6e-113 412.1 305 63.9
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.4e-112 410.2 302 66.9
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.1e-112 409.1 303 67.3
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 2.6e-111 406.0 303 63.7
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.4e-111 405.6 304 63.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 4.4e-111 405.2 302 64.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 5.8e-111 404.8 292 66.4
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.3e-110 403.7 303 62.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 8.4e-110 401.0 299 65.2
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.1e-109 400.6 304 62.2
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.1e-109 400.6 349 57.3
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.4e-109 399.4 307 62.5
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 7.1e-109 397.9 270 69.3
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.3e-109 397.5 304 62.5
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 9.3e-109 397.5 302 61.9
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.2e-108 397.1 302 64.2
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.1e-108 396.4 292 65.4
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 7.8e-108 394.4 302 64.2
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.3e-107 392.9 251 72.5
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 9.6e-106 387.5 251 73.3
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.0e-103 379.8 303 62.7
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 5.8e-103 378.3 258 67.8
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.2e-102 376.3 351 55.3
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 1.9e-101 373.2 310 61.6
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 5.4e-101 371.7 253 67.2
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 7.9e-100 367.9 239 70.7
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 2.3e-99 366.3 219 77.6
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.1e-98 364.0 304 57.9
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 3.3e-98 362.5 252 67.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 2.8e-97 359.4 214 77.1
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 2.0e-95 353.2 239 67.8
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 3.4e-95 352.4 302 59.9
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.9e-94 349.4 292 58.9
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 4.9e-94 348.6 243 69.1
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 4.9e-94 348.6 303 57.8
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 2.3e-91 339.7 304 57.2
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 4.5e-87 325.5 208 73.1
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 4.5e-87 325.5 246 65.4
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 1.7e-86 323.6 194 75.3
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 2.9e-86 322.8 196 77.6
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 7.7e-79 298.1 227 66.5
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 2.1e-68 263.5 193 67.9
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 9.4e-61 238.0 151 74.2
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 2.7e-60 236.5 298 46.3
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 6.1e-60 235.3 195 60.0
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 3.0e-59 233.0 240 52.5
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.6e-58 229.9 250 51.2
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 4.2e-53 212.6 137 74.5
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 4.5e-47 192.6 114 75.4
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 8.0e-44 181.8 116 75.0
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 2.3e-35 153.7 250 36.8
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 1.2e-18 98.2 62 69.4
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 1.2e-18 98.2 115 45.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 2.4e-16 90.5 156 35.3
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.2e-16 90.1 212 33.5
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 9.2e-16 88.6 197 29.4
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.2e-15 88.2 184 34.2
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.6e-15 87.8 195 32.8
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 1.6e-15 87.8 239 31.0
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.1e-15 87.4 227 30.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.1e-15 87.4 164 35.4
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 2.7e-15 87.0 184 32.6
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 2.7e-15 87.0 207 32.9
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 3.5e-15 86.7 195 34.4
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 3.5e-15 86.7 217 31.3
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 4.6e-15 86.3 192 32.8
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 4.6e-15 86.3 152 36.2
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 6.0e-15 85.9 192 31.2
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 6.0e-15 85.9 191 31.9
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 6.0e-15 85.9 218 31.7
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 6.0e-15 85.9 218 31.7
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 7.8e-15 85.5 221 30.8
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.0e-14 85.1 192 32.8
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 1.0e-14 85.1 192 32.8
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 1.0e-14 85.1 192 32.8
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.0e-14 85.1 217 31.8
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.0e-14 85.1 192 32.8
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.0e-14 85.1 218 32.1
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.0e-14 85.1 189 32.8
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 1.0e-14 85.1 273 30.0
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 1.0e-14 85.1 183 33.3
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.3e-14 84.7 220 30.9
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.3e-14 84.7 183 32.8
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.7e-14 84.3 192 33.3
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.7e-14 84.3 192 33.3
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 2.3e-14 84.0 131 37.4
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 2.3e-14 84.0 192 31.8
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.3e-14 84.0 184 32.6
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 3.0e-14 83.6 256 30.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.0e-14 83.6 238 30.7
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 3.0e-14 83.6 185 32.4
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.0e-14 83.6 170 34.1
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 3.0e-14 83.6 215 32.1
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 3.0e-14 83.6 183 33.9
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 3.0e-14 83.6 189 32.3
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 3.9e-14 83.2 185 32.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 3.9e-14 83.2 131 35.1
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 3.9e-14 83.2 237 30.4
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.9e-14 83.2 184 33.2
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 5.1e-14 82.8 128 37.5
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 6.6e-14 82.4 131 36.6
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 6.6e-14 82.4 220 28.6
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 6.6e-14 82.4 252 30.2
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 8.6e-14 82.0 56 66.1
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 8.6e-14 82.0 169 32.5
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 1.1e-13 81.6 118 38.1
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.1e-13 81.6 191 32.5
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 1.1e-13 81.6 218 28.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.1e-13 81.6 184 31.0
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 1.1e-13 81.6 143 36.4
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 1.5e-13 81.3 169 32.5
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.5e-13 81.3 212 30.7
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.9e-13 80.9 194 33.5
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.9e-13 80.9 194 33.5
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.9e-13 80.9 189 32.3
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.9e-13 80.9 183 32.8
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 2.5e-13 80.5 131 35.9
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 2.5e-13 80.5 189 32.3
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 2.5e-13 80.5 189 31.7
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.5e-13 80.5 184 33.2
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.5e-13 80.5 215 30.2
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.5e-13 80.5 188 29.3
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 2.5e-13 80.5 131 34.4
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 3.3e-13 80.1 189 32.8
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 3.3e-13 80.1 189 31.7
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 3.3e-13 80.1 118 37.3
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 4.3e-13 79.7 217 30.4
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 4.3e-13 79.7 211 31.3
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 4.3e-13 79.7 60 61.7
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 4.3e-13 79.7 196 32.1
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 5.6e-13 79.3 169 32.0
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 5.6e-13 79.3 189 31.2
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 7.3e-13 79.0 184 31.5
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 1.2e-12 78.2 214 30.8
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.6e-12 77.8 181 29.3
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.6e-12 77.8 181 29.3
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.6e-12 77.8 163 29.4
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.6e-12 77.8 189 30.7
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.6e-12 77.8 116 36.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 2.1e-12 77.4 218 29.8
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 2.1e-12 77.4 184 33.7
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.1e-12 77.4 183 31.7
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.1e-12 77.4 141 29.8
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.8e-12 77.0 181 29.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.8e-12 77.0 181 29.3
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 2.8e-12 77.0 184 31.0
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.8e-12 77.0 116 36.2
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 2.8e-12 77.0 227 30.0
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.6e-12 76.6 182 31.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.6e-12 76.6 147 32.0
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 6.2e-12 75.9 116 34.5
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 6.2e-12 75.9 116 36.2
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 8.1e-12 75.5 116 36.2
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 1.1e-11 75.1 184 31.0
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-11 75.1 116 35.3
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.1e-11 75.1 116 35.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.4e-11 74.7 116 37.1
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 1.4e-11 74.7 216 30.1
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.8e-11 74.3 183 29.5
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 2.3e-11 73.9 131 31.3
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.3e-11 73.9 188 28.7
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 4.0e-11 73.2 215 30.7
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 5.2e-11 72.8 183 30.1
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.2e-11 72.8 131 31.3
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 5.2e-11 72.8 131 31.3
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 6.8e-11 72.4 190 28.9
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.5e-10 71.2 116 32.8
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 2.6e-10 70.5 131 36.6
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 3.4e-10 70.1 210 30.0
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 8.3e-09 65.5 147 29.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.1e-08 65.1 183 27.3
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 4.6e-07 59.7 163 29.4
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 1.3e-06 58.2 67 43.3
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 3.0e-06 57.0 94 35.1


User provided reference genes

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