Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 6.6e-105 384.0 193 100.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 3.8e-76 288.5 190 74.7
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.4e-75 286.6 187 74.3
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 2.2e-71 272.7 187 71.1
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 2.0e-69 266.2 193 68.9
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 4.5e-69 265.0 197 68.5
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 1.0e-68 263.8 192 69.8
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.3e-68 263.5 190 68.4
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.3e-68 263.5 197 67.0
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.7e-68 263.1 192 68.8
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.9e-68 262.3 191 70.2
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 3.8e-68 261.9 192 67.2
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.8e-68 261.9 197 67.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 5.0e-68 261.5 190 68.4
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 5.0e-68 261.5 197 67.5
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.1e-67 260.4 194 67.0
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 1.4e-67 260.0 193 65.8
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.9e-67 259.6 191 68.1
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 3.2e-67 258.8 194 65.5
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 4.2e-67 258.5 193 67.4
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 5.5e-67 258.1 198 65.2
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 5.5e-67 258.1 190 66.8
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 7.2e-67 257.7 193 65.3
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 9.4e-67 257.3 176 70.5
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 9.4e-67 257.3 174 71.8
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.6e-66 256.5 194 65.5
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.1e-66 256.1 192 64.6
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 4.7e-66 255.0 180 68.3
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 4.7e-66 255.0 189 66.1
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 6.1e-66 254.6 176 70.5
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 6.1e-66 254.6 195 64.6
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 7.9e-66 254.2 190 66.8
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 7.9e-66 254.2 174 72.4
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 7.9e-66 254.2 176 68.2
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.0e-65 253.8 178 68.5
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.8e-65 253.1 189 65.6
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.8e-65 253.1 193 65.8
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 2.3e-65 252.7 184 65.8
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.3e-65 252.7 174 73.0
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 2.3e-65 252.7 191 66.0
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.3e-65 252.7 194 65.5
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.0e-65 252.3 187 65.8
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 3.9e-65 251.9 188 66.0
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 3.9e-65 251.9 193 65.8
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 5.1e-65 251.5 193 64.8
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.1e-64 250.4 196 61.7
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.1e-64 250.4 176 69.3
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.1e-64 250.4 193 62.7
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 1.5e-64 250.0 191 64.9
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.5e-64 250.0 193 63.7
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.5e-64 250.0 192 63.0
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 1.5e-64 250.0 193 65.3
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.0e-64 249.6 192 64.1
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.0e-64 249.6 207 60.4
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 2.0e-64 249.6 176 66.5
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 2.6e-64 249.2 191 64.9
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 2.6e-64 249.2 207 60.4
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 4.4e-64 248.4 175 69.1
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 4.4e-64 248.4 189 64.6
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 4.4e-64 248.4 187 64.2
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 5.7e-64 248.1 196 61.2
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 7.4e-64 247.7 169 69.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 7.4e-64 247.7 210 60.5
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 9.7e-64 247.3 169 69.2
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 9.7e-64 247.3 169 69.2
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 9.7e-64 247.3 175 68.6
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 1.3e-63 246.9 188 65.4
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 1.7e-63 246.5 169 69.2
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 1.7e-63 246.5 169 69.2
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 1.7e-63 246.5 169 69.2
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.2e-63 246.1 168 69.6
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 2.2e-63 246.1 168 69.6
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.2e-63 246.1 169 69.2
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 2.8e-63 245.7 169 69.2
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.8e-63 245.7 169 68.6
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.8e-63 245.7 176 69.3
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 3.7e-63 245.4 194 64.4
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.7e-63 245.4 187 63.1
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.7e-63 245.4 177 67.2
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 3.7e-63 245.4 177 67.2
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 4.8e-63 245.0 191 64.9
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-62 243.8 169 68.6
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.1e-62 243.8 169 68.6
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.1e-62 243.8 169 68.6
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 1.1e-62 243.8 169 68.0
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.1e-62 243.8 177 65.5
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.1e-62 243.8 177 65.5
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 1.4e-62 243.4 194 63.4
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.4e-62 243.4 176 65.9
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 1.8e-62 243.0 175 68.0
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.8e-62 243.0 177 66.7
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 1.8e-62 243.0 177 66.1
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 2.4e-62 242.7 179 66.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.4e-62 242.7 176 67.6
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 2.4e-62 242.7 191 62.3
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 3.1e-62 242.3 187 62.0
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 4.1e-62 241.9 196 59.7
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 5.3e-62 241.5 194 62.4
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.5e-61 240.0 184 63.6
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.5e-61 240.0 199 60.8
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 7.7e-61 237.7 190 64.7
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.3e-60 236.9 190 64.2
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.1e-59 233.8 177 66.1
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 1.4e-57 226.9 185 61.6
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 1.5e-56 223.4 196 57.7
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.8e-55 219.2 161 72.7
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 1.2e-53 213.8 186 59.7
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 3.5e-53 212.2 186 59.1
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 7.7e-53 211.1 275 44.7
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 1.0e-52 210.7 186 58.6
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 2.5e-51 206.1 182 57.1
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 1.2e-50 203.8 206 53.9
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.6e-50 203.4 156 63.5
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 1.6e-50 203.4 186 56.5
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.1e-50 203.0 157 61.8
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 4.7e-50 201.8 186 55.9
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 8.0e-50 201.1 186 55.9
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 2.3e-49 199.5 286 40.9
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 4.8e-47 191.8 140 65.0
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 2.4e-46 189.5 150 62.0
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 5.3e-46 188.3 136 65.4
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 8.5e-44 181.0 130 69.2
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 1.0e-41 174.1 189 49.7
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 4.0e-41 172.2 122 70.5
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.5e-40 170.2 112 73.2
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 2.6e-40 169.5 123 68.3
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 3.7e-39 165.6 122 65.6
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 1.4e-38 163.7 97 80.4
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 2.3e-36 156.4 113 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 5.0e-36 155.2 114 64.0
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 5.0e-36 155.2 110 66.4
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 6.6e-36 154.8 107 63.6
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 8.6e-36 154.5 138 57.2
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 8.6e-36 154.5 108 66.7
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.1e-34 149.8 101 70.3
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 9.2e-30 134.4 95 66.3
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.6e-29 133.7 93 66.7
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 6.1e-26 121.7 130 53.8
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 6.1e-26 121.7 130 53.8
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.9e-20 102.4 89 58.4
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 6.2e-18 95.1 90 54.4
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 4.0e-17 92.4 103 51.5
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 2.6e-16 89.7 66 62.1
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 6.6e-12 75.1 83 45.8
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 1.2e-10 70.9 54 57.4
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 1.2e-10 70.9 64 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 6.8e-09 65.1 46 54.3
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.8e-09 65.1 48 62.5
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 6.8e-09 65.1 58 55.2


User provided reference genes

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