Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011111 Vanilla planifolia HOM05D000207 ORTHO05D021224 1.8e-94 349.7 247 100.0
HPP92_011096 Vanilla planifolia HOM05D000207 ORTHO05D021224 6.2e-47 191.8 241 72.2
MD14G1238200 Malus domestica HOM05D000207 ORTHO05D001482 2.1e-15 87.0 239 36.4
Sc12g0007800 Simmondsia chinensis HOM05D000207 ORTHO05D001482 8.2e-15 85.1 242 39.3
Nn4g24307 Nelumbo nucifera HOM05D000207 ORTHO05D001482 1.1e-14 84.7 243 43.6
FAN08G3461 Fragaria x ananassa HOM05D000207 ORTHO05D001482 5.9e-13 79.0 246 33.3
TAR371G0331 Trochodendron aralioides HOM05D000207 ORTHO05D001482 5.9e-13 79.0 241 41.1
Lj5A160G54 Lonicera japonica HOM05D000207 ORTHO05D001482 2.2e-12 77.0 226 39.8
Dinv06370 Davidia involucrata HOM05D000207 ORTHO05D001482 2.9e-12 76.6 242 41.3
MD06G1231400 Malus domestica HOM05D000207 ORTHO05D001482 2.9e-12 76.6 210 35.7
CSS0020226 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D001482 3.8e-12 76.3 216 49.5
MELO3C001921.2 Cucumis melo HOM05D000207 ORTHO05D001482 3.8e-12 76.3 246 37.0
CsaV3_1G004940 Cucumis sativus L. HOM05D000207 ORTHO05D001482 3.8e-12 76.3 248 37.1
Cc04_g06050 Coffea canephora HOM05D000207 ORTHO05D001482 6.5e-12 75.5 241 36.1
CDE11G0142 Ceratophyllum demersum HOM05D000207 ORTHO05D001482 8.4e-12 75.1 242 36.0
FAN13G1936 Fragaria x ananassa HOM05D000207 ORTHO05D001482 1.9e-11 73.9 246 30.9
Manes.14G172600 Manihot esculenta HOM05D000207 ORTHO05D001482 3.2e-11 73.2 210 38.6
Potri.012G044700 Populus trichocarpa HOM05D000207 ORTHO05D001482 3.2e-11 73.2 248 35.1
Dinv19286 Davidia involucrata HOM05D000207 ORTHO05D001482 5.5e-11 72.4 242 36.4
FAN04G0107 Fragaria x ananassa HOM05D000207 ORTHO05D001482 5.5e-11 72.4 246 30.5
Cpa.g.sc3.373 Carica papaya HOM05D000207 ORTHO05D001482 7.2e-11 72.0 233 34.8
Cfa019626 Carpinus fangiana HOM05D000207 ORTHO05D001482 9.3e-11 71.6 215 36.3
CDE05G1457 Ceratophyllum demersum HOM05D000207 ORTHO05D021224 9.3e-11 71.6 190 36.8
Prupe.5G235400 Prunus persica HOM05D000207 ORTHO05D001482 9.3e-11 71.6 245 33.1
Nn3g18331 Nelumbo nucifera HOM05D000207 ORTHO05D001482 1.2e-10 71.2 248 44.4
RcHm_v2.0_Chr7g0178091 Rosa chinensis HOM05D000207 ORTHO05D001482 1.2e-10 71.2 241 32.0
vmacro17771 Vaccinium macrocarpon HOM05D000207 ORTHO05D001482 1.2e-10 71.2 211 37.4
HanXRQChr17g0545761 Helianthus annuus HOM05D000207 ORTHO05D001482 2.7e-10 70.1 232 33.6
TAR629G3013 Trochodendron aralioides HOM05D000207 ORTHO05D001482 2.7e-10 70.1 245 38.4
Medtr6g470940 Medicago truncatula HOM05D000207 ORTHO05D001482 3.5e-10 69.7 213 34.7
Sabra12G0031200 Salix brachista HOM05D000207 ORTHO05D001482 3.5e-10 69.7 261 35.2
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.0e-09 68.2 247 32.4
AUR62042014 Chenopodium quinoa HOM05D000207 ORTHO05D001482 2.3e-09 67.0 238 34.5
Solyc03g118530.3 Solanum lycopersicum HOM05D000207 ORTHO05D001482 3.9e-09 66.2 243 34.2
Actinidia09074 Actinidia chinensis HOM05D000207 ORTHO05D001482 5.1e-09 65.9 248 40.3
Oeu046620.2 Olea europaea HOM05D000207 ORTHO05D001482 5.1e-09 65.9 216 36.6
BraA05t22027Z Brassica rapa HOM05D000207 ORTHO05D001482 6.7e-09 65.5 193 34.7
FvH4_5g17560 Fragaria vesca HOM05D000207 ORTHO05D001482 6.7e-09 65.5 239 30.5
arahy.Tifrunner.gnm1.ann1.R9E8HA Arachis hypogaea HOM05D000207 ORTHO05D001482 1.1e-08 64.7 228 33.8
TPR.G25365 Trifolium pratense HOM05D000207 ORTHO05D001482 1.1e-08 64.7 216 45.4
Sopen03g037470 Solanum pennellii HOM05D000207 ORTHO05D001482 1.5e-08 64.3 243 33.7
TWI15G0123 Tripterygium wilfordii HOM05D000207 ORTHO05D001482 1.5e-08 64.3 214 35.0
TWI81G0602 Tripterygium wilfordii HOM05D000207 ORTHO05D001482 1.5e-08 64.3 254 33.5
A05p31960 Brassica napus HOM05D000207 ORTHO05D001482 1.9e-08 63.9 192 34.9
MBI12_g16611_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D001482 1.9e-08 63.9 241 44.4
Phvul.004G149200 Phaseolus vulgaris HOM05D000207 ORTHO05D001482 1.9e-08 63.9 82 50.0
Sopen06g026210 Solanum pennellii HOM05D000207 ORTHO05D001482 1.9e-08 63.9 239 32.6
FAN18G3020 Fragaria x ananassa HOM05D000207 ORTHO05D001482 3.3e-08 63.2 239 30.1
Glyma.09G174000 Glycine max HOM05D000207 ORTHO05D001482 3.3e-08 63.2 83 53.0
Sed0006423 Sechium edule HOM05D000207 ORTHO05D001482 3.3e-08 63.2 231 32.5
Duzib084G1277 Durio zibethinus HOM05D000207 ORTHO05D001482 5.7e-08 62.4 246 32.9
Lsat_1_v5_gn_0_34000 Lactuca sativa HOM05D000207 ORTHO05D001482 5.7e-08 62.4 254 31.9
Lsat_1_v5_gn_8_500 Lactuca sativa HOM05D000207 ORTHO05D001482 5.7e-08 62.4 243 32.1
CiPaw.16G096700 Carya illinoinensis HOM05D000207 ORTHO05D001482 7.4e-08 62.0 100 48.0
SalBow1G6464 Salvia bowleyana HOM05D000207 ORTHO05D001482 9.7e-08 61.6 215 34.9
Nitab4.5_0002450g0170 Nicotiana tabacum HOM05D000207 ORTHO05D001482 1.3e-07 61.2 243 33.3
Potri.015G035600 Populus trichocarpa HOM05D000207 ORTHO05D001482 1.3e-07 61.2 245 33.9
PGR083G0979 Punica granatum HOM05D000207 ORTHO05D001482 1.3e-07 61.2 210 34.8
C05p48500 Brassica napus HOM05D000207 ORTHO05D001482 1.6e-07 60.8 192 34.4
CAN.G843.39 Capsicum annuum HOM05D000207 ORTHO05D001482 2.2e-07 60.5 244 32.0
Haze_18897 Corylus avellana HOM05D000207 ORTHO05D001482 2.2e-07 60.5 218 33.9
arahy.Tifrunner.gnm1.ann1.ZH4NLG Arachis hypogaea HOM05D000207 ORTHO05D001482 2.8e-07 60.1 226 32.7
DCAR_003537 Daucus carota HOM05D000207 ORTHO05D001482 2.8e-07 60.1 248 37.1
MSTRG.9362 Avicennia marina HOM05D000207 ORTHO05D001482 3.7e-07 59.7 216 34.7
Carub.0003s1756 Capsella rubella HOM05D000207 ORTHO05D001482 3.7e-07 59.7 238 33.2
Migut.D01202 Erythranthe guttata HOM05D000207 ORTHO05D001482 3.7e-07 59.7 214 34.1
Glyma.07G103400 Glycine max HOM05D000207 ORTHO05D001482 3.7e-07 59.7 118 44.1
Os03g0711800 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D001482 4.8e-07 59.3 42 81.0
Aqoxy3G00038 Aquilegia oxysepala HOM05D000207 ORTHO05D001482 6.3e-07 58.9 62 59.7
AUR62033097 Chenopodium quinoa HOM05D000207 ORTHO05D001482 6.3e-07 58.9 243 34.2
Zm00001eb054830 Zea mays HOM05D000207 ORTHO05D001482 8.2e-07 58.5 41 80.5
HanXRQChr05g0142661 Helianthus annuus HOM05D000207 ORTHO05D001482 1.1e-06 58.2 249 31.7
Peaxi162Scf00207g00139 Petunia axillaris HOM05D000207 ORTHO05D001482 1.1e-06 58.2 246 34.6
COL.COLO4_28879 Corchorus olitorius HOM05D000207 ORTHO05D001482 1.4e-06 57.8 219 34.2
Eucgr.H00538 Eucalyptus grandis HOM05D000207 ORTHO05D001482 1.4e-06 57.8 273 31.9
Sp3g15970 Schrenkiella parvula HOM05D000207 ORTHO05D001482 1.4e-06 57.8 243 32.1
Thecc.03G059700 Theobroma cacao HOM05D000207 ORTHO05D001482 1.4e-06 57.8 222 32.9
BcaC05g28750 Brassica carinata HOM05D000207 ORTHO05D001482 2.4e-06 57.0 192 33.9
BolC5t33585H Brassica oleracea HOM05D000207 ORTHO05D001482 2.4e-06 57.0 192 33.9
AL3G31010 Arabidopsis lyrata HOM05D000207 ORTHO05D001482 3.1e-06 56.6 236 31.8
Oeu015094.1 Olea europaea HOM05D000207 ORTHO05D001482 3.1e-06 56.6 249 33.3
Solyc06g068920.3 Solanum lycopersicum HOM05D000207 ORTHO05D001482 5.3e-06 55.8 239 31.0
Nitab4.5_0002046g0090 Nicotiana tabacum HOM05D000207 ORTHO05D001482 6.9e-06 55.5 243 31.3
Glyma.01G072900 Glycine max HOM05D000207 ORTHO05D021224 9.0e-06 55.1 59 59.3
Gohir.A09G175100 Gossypium hirsutum HOM05D000207 ORTHO05D001482 9.0e-06 55.1 89 48.3
Gohir.D11G002300 Gossypium hirsutum HOM05D000207 ORTHO05D001482 9.0e-06 55.1 87 47.1
Gorai.007G003300 Gossypium raimondii HOM05D000207 ORTHO05D001482 9.0e-06 55.1 87 47.1


User provided reference genes

Program Settings