Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 0.0e+00 1679.8 860 100.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 5.2e-250 868.2 877 55.9
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 9.1e-247 857.4 880 54.4
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 6.5e-245 851.3 858 55.8
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.4e-234 817.0 871 54.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 1.7e-232 810.1 871 53.0
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 4.3e-228 795.4 869 51.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 4.0e-226 788.9 876 51.9
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 8.9e-226 787.7 873 51.2
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 4.9e-224 781.9 887 51.5
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.1e-223 780.8 868 51.8
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 6.0e-222 775.0 878 52.2
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 6.6e-221 771.5 866 51.5
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.1e-218 762.7 874 50.2
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 5.8e-217 758.4 868 50.2
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.9e-216 756.1 866 51.2
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 6.4e-216 755.0 872 51.0
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 6.4e-216 755.0 889 50.4
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 8.3e-216 754.6 892 49.8
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.7e-214 749.6 868 49.4
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 4.6e-214 748.8 855 50.5
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.7e-213 746.9 881 49.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 3.0e-213 746.1 865 49.9
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 6.6e-213 745.0 856 50.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 8.6e-213 744.6 877 48.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.5e-212 743.8 866 49.0
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.9e-212 743.4 908 49.2
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 4.3e-212 742.3 867 49.4
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 3.6e-211 739.2 872 48.4
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 1.1e-210 737.6 856 50.4
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 1.8e-210 736.9 869 49.7
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 2.3e-210 736.5 867 49.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 2.3e-210 736.5 874 49.9
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.2e-209 734.2 877 50.5
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.0e-209 733.4 870 49.4
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.6e-209 731.5 839 49.2
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 7.6e-209 731.5 849 50.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 2.2e-208 729.9 873 49.5
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.1e-207 727.6 871 50.4
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 2.4e-207 726.5 874 50.0
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 7.1e-207 724.9 874 50.3
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 7.1e-207 724.9 870 50.2
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 2.7e-206 723.0 856 50.1
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 4.6e-206 722.2 874 50.5
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 7.8e-206 721.5 851 50.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 3.0e-205 719.5 836 50.1
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.1e-205 718.8 759 53.8
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.6e-205 718.4 885 49.6
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 6.6e-205 718.4 881 49.9
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.5e-204 717.2 835 50.9
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 2.5e-204 716.5 834 50.4
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.3e-204 716.1 835 49.8
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 3.6e-203 712.6 873 49.3
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 6.9e-202 708.4 872 48.6
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 8.9e-202 708.0 925 47.4
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.2e-201 707.6 879 47.3
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 2.0e-201 706.8 725 54.9
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.3e-200 704.1 865 49.7
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 3.8e-200 702.6 875 49.0
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 8.4e-200 701.4 838 49.4
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.4e-199 700.7 840 48.3
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.9e-199 700.3 775 52.1
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 2.4e-199 699.9 842 47.5
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.4e-199 699.9 879 48.4
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 3.2e-199 699.5 778 51.8
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.2e-199 699.1 874 48.6
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 5.4e-199 698.7 838 49.0
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 7.1e-199 698.4 876 47.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 4.6e-198 695.7 948 46.5
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.0e-197 694.5 873 46.6
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-197 694.5 888 46.8
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 8.7e-197 691.4 878 47.4
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 1.1e-196 691.0 856 48.7
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.3e-196 689.5 841 49.7
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 4.3e-196 689.1 875 46.7
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 5.6e-196 688.7 854 47.1
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 1.3e-195 687.6 879 47.9
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 2.8e-195 686.4 856 48.2
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.1e-194 684.5 891 46.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.4e-194 684.1 874 47.6
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 2.4e-194 683.3 825 49.0
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 2.4e-194 683.3 879 47.1
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.2e-193 681.0 873 46.0
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 6.4e-192 675.2 866 47.3
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.7e-190 669.8 723 52.3
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.7e-190 669.8 881 46.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.0e-189 667.9 945 45.4
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.8e-189 667.2 902 46.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 5.1e-189 665.6 871 45.9
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 3.3e-188 662.9 844 47.4
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 2.1e-187 660.2 931 43.6
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 4.8e-187 659.1 877 46.1
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.4e-186 656.8 747 51.7
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 3.1e-186 656.4 833 45.9
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-185 654.4 871 45.7
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 5.8e-185 652.1 830 45.9
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 2.2e-184 650.2 859 46.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.4e-183 647.5 838 46.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.3e-181 641.0 802 48.0
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.5e-180 637.5 1025 41.9
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 3.7e-179 632.9 835 45.1
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 8.2e-179 631.7 835 45.1
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 8.2e-179 631.7 832 45.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.5e-177 627.5 872 44.7
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.7e-176 624.0 863 45.9
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 2.2e-176 623.6 839 44.9
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 8.4e-176 621.7 854 45.4
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 9.3e-175 618.2 840 45.0
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.0e-173 614.8 849 44.8
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 1.8e-173 614.0 915 43.6
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 7.4e-172 608.6 794 46.1
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 5.3e-170 602.4 751 47.8
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 1.9e-167 594.0 589 56.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 8.7e-165 585.1 558 57.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 1.1e-164 584.7 803 44.7
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 9.7e-164 581.6 750 47.1
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.2e-161 574.7 835 44.3
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 5.5e-159 565.8 789 44.0
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 1.1e-156 558.1 809 42.6
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.2e-151 538.9 549 53.9
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 1.4e-146 524.6 800 42.4
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 6.5e-144 515.8 822 42.0
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 9.4e-143 511.9 735 42.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 3.3e-140 503.4 761 41.3
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 4.4e-140 503.1 847 40.5
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 6.3e-139 499.2 866 39.3
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.7e-137 493.8 552 52.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.2e-132 478.4 1120 33.8
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.6e-132 477.2 788 41.0
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 7.5e-132 475.7 450 56.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 5.6e-119 433.0 858 35.2
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 9.5e-119 432.2 566 45.9
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 8.6e-112 409.1 503 48.3
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.7e-104 384.8 811 35.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.2e-97 362.1 648 38.0
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 1.5e-95 355.1 554 41.5
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.1e-85 320.9 730 34.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.0e-64 252.7 434 39.4
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.2e-58 231.1 371 41.0
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.5e-55 221.5 290 48.6
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 5.7e-55 220.3 315 43.2
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.8e-54 218.0 247 54.7
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.3e-46 190.3 193 56.0
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.9e-35 154.8 251 40.2
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 3.2e-34 151.4 173 53.8
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.0e-28 132.1 139 54.0
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 6.1e-25 120.6 176 43.2
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-22 112.1 201 37.3
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 2.2e-22 112.1 201 37.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 2.7e-20 105.1 182 36.3
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 2.7e-20 105.1 182 36.3
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 3.5e-20 104.8 326 29.4
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 5.4e-13 80.9 118 42.4
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 3.5e-12 78.2 168 33.9
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 4.5e-12 77.8 106 47.2
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 7.7e-12 77.0 58 65.5
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 7.7e-12 77.0 93 47.3
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.7e-11 75.9 179 29.6
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 2.3e-11 75.5 200 30.5
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 3.8e-11 74.7 58 62.1
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 1.1e-10 73.2 59 62.7
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.0e-08 66.6 163 29.4
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-08 65.9 132 34.8
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 2.6e-07 62.0 37 78.4
Lsat_1_v5_gn_5_60100 Lactuca sativa HOM05D004054 ORTHO05D036438 4.4e-07 61.2 67 49.3
Oeu011694.1 Olea europaea HOM05D004054 ORTHO05D049449 1.7e-06 59.3 93 37.6


User provided reference genes

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