Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 2.7e-86 322.0 171 100.0
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 1.3e-56 223.4 138 81.2
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 1.9e-55 219.5 138 80.4
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.3e-55 218.4 138 77.5
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 4.3e-55 218.4 138 79.7
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 5.6e-55 218.0 138 79.7
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 5.6e-55 218.0 138 79.7
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 1.6e-54 216.5 133 79.7
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 2.1e-54 216.1 138 76.1
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 2.8e-54 215.7 136 83.1
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 3.6e-54 215.3 138 79.0
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 8.1e-54 214.2 138 79.7
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 8.1e-54 214.2 138 75.4
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 1.4e-53 213.4 138 83.3
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 1.8e-53 213.0 138 74.6
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 3.1e-53 212.2 140 75.7
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 3.1e-53 212.2 138 84.1
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 8.9e-53 210.7 138 79.7
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 8.9e-53 210.7 138 82.6
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 8.9e-53 210.7 138 78.3
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 1.2e-52 210.3 138 79.0
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 1.2e-52 210.3 139 74.8
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 2.6e-52 209.1 138 79.0
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 2.6e-52 209.1 138 79.0
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 3.4e-52 208.8 138 82.6
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 3.4e-52 208.8 138 82.6
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 3.4e-52 208.8 143 74.1
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 4.4e-52 208.4 138 79.0
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 7.6e-52 207.6 138 80.4
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 9.9e-52 207.2 138 77.5
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 9.9e-52 207.2 138 77.5
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 9.9e-52 207.2 138 76.8
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 9.9e-52 207.2 138 76.8
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 9.9e-52 207.2 138 83.3
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 1.3e-51 206.8 138 74.6
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 1.3e-51 206.8 133 79.7
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 1.7e-51 206.5 138 80.4
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 2.9e-51 205.7 138 76.8
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 4.9e-51 204.9 138 77.5
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 8.3e-51 204.1 130 76.9
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 1.1e-50 203.8 141 76.6
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 1.4e-50 203.4 138 83.3
EL10Ac5g11048 Beta vulgaris HOM05D005637 ORTHO05D006983 1.9e-50 203.0 138 70.3
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 3.2e-50 202.2 138 79.0
Ah.02g113660 Amaranthus hybridus HOM05D005637 ORTHO05D006983 4.1e-50 201.8 133 73.7
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 4.1e-50 201.8 140 81.4
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 5.4e-50 201.4 138 80.4
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 7.1e-50 201.1 138 81.2
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 7.1e-50 201.1 138 74.6
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 9.2e-50 200.7 136 83.1
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 1.2e-49 200.3 133 79.7
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 1.6e-49 199.9 138 74.6
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 2.1e-49 199.5 138 80.4
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 2.1e-49 199.5 138 77.5
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 3.5e-49 198.7 104 86.5
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 4.6e-49 198.4 139 72.7
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 4.6e-49 198.4 138 78.3
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 6.0e-49 198.0 104 86.5
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 7.8e-49 197.6 138 80.4
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 1.0e-48 197.2 138 79.7
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 2.3e-48 196.1 128 82.0
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 2.3e-48 196.1 138 79.7
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 2.3e-48 196.1 133 72.9
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 2.3e-48 196.1 138 79.7
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 2.3e-48 196.1 139 77.7
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 3.0e-48 195.7 141 80.1
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 8.6e-48 194.1 142 73.2
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.6e-48 194.1 142 73.2
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.6e-48 194.1 142 73.2
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 8.6e-48 194.1 138 80.4
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 1.5e-47 193.4 141 78.7
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 1.5e-47 193.4 139 78.4
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 1.9e-47 193.0 104 83.7
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 1.9e-47 193.0 138 76.1
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 1.9e-47 193.0 138 79.7
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 2.5e-47 192.6 138 79.7
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 3.3e-47 192.2 138 71.0
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 3.3e-47 192.2 138 79.7
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 4.3e-47 191.8 138 78.3
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 4.3e-47 191.8 138 78.3
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 4.3e-47 191.8 140 76.4
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 5.6e-47 191.4 138 80.4
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 5.6e-47 191.4 98 88.8
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 7.3e-47 191.0 102 85.3
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 7.3e-47 191.0 139 77.0
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 9.6e-47 190.7 138 81.2
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 1.2e-46 190.3 138 81.2
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 1.2e-46 190.3 138 81.2
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.2e-46 190.3 142 71.8
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 1.6e-46 189.9 98 87.8
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 1.6e-46 189.9 98 87.8
AUR62008440 Chenopodium quinoa HOM05D005637 ORTHO05D006983 4.7e-46 188.3 139 68.3
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 6.2e-46 188.0 98 87.8
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 8.1e-46 187.6 133 76.7
MBI02_g20483_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 1.8e-45 186.4 154 72.1
Nitab4.5_0001195g0050 Nicotiana tabacum HOM05D005637 ORTHO05D006983 2.4e-45 186.0 100 84.0
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 2.4e-45 186.0 100 84.0
Ah.02g113670 Amaranthus hybridus HOM05D005637 ORTHO05D006983 6.8e-45 184.5 166 57.8
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 2.0e-44 183.0 133 75.2
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.4e-44 182.2 95 88.4
AUR62021650 Chenopodium quinoa HOM05D005637 ORTHO05D006983 5.8e-44 181.4 128 70.3
MBI04_g11434_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 8.4e-43 177.6 124 68.5
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 1.1e-42 177.2 116 82.8
CBR_g30502 Chara braunii HOM05D005637 ORTHO05D006983 1.4e-42 176.8 103 76.7
LjContig00103g0026967 Lotus japonicus HOM05D005637 ORTHO05D006983 1.6e-41 173.3 149 63.1
Atru.chr9.197 Acer truncatum HOM05D005637 ORTHO05D006983 2.1e-41 172.9 89 88.8
HanXRQChr04g0107301 Helianthus annuus HOM05D005637 ORTHO05D006983 3.0e-40 169.1 88 88.6
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 3.4e-36 155.6 257 38.5
Sabra10G0125900 Salix brachista HOM05D005637 ORTHO05D006983 1.7e-35 153.3 176 57.4
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 2.4e-34 149.4 138 61.6
CSS0006784 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 4.6e-33 145.2 133 63.9
BcaC06g35140 Brassica carinata HOM05D005637 ORTHO05D006983 2.4e-29 132.9 138 55.8
CSS0019959 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.7e-27 126.7 71 80.3
LjContig00261g0007071 Lotus japonicus HOM05D005637 ORTHO05D006983 9.3e-26 120.9 138 52.9
arahy.Tifrunner.gnm1.ann1.DXDM30 Arachis hypogaea HOM05D005637 ORTHO05D006983 2.1e-25 119.8 86 70.9
TAR365G0307 Trochodendron aralioides HOM05D005637 ORTHO05D006983 7.9e-25 117.9 58 87.9
Aa31LG7G8540 Aethionema arabicum HOM05D005637 ORTHO05D006983 6.7e-24 114.8 86 68.6
Manes.06G090201 Manihot esculenta HOM05D005637 ORTHO05D006983 4.3e-23 112.1 86 81.4
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 2.4e-21 106.3 75 81.3
CSS0007590 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 6.9e-21 104.8 54 85.2
BcaB03g12359 Brassica carinata HOM05D005637 ORTHO05D006983 2.0e-20 103.2 82 70.7
BcaB04g17310 Brassica carinata HOM05D005637 ORTHO05D006983 2.0e-20 103.2 82 68.3
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 1.7e-19 100.1 133 54.1
C03p72380 Brassica napus HOM05D005637 ORTHO05D006983 2.9e-19 99.4 55 80.0
BolC3t19533H Brassica oleracea HOM05D005637 ORTHO05D006983 2.9e-19 99.4 55 80.0
BcaC01g01741 Brassica carinata HOM05D005637 ORTHO05D006983 4.9e-19 98.6 50 86.0
Sed0018902 Sechium edule HOM05D005637 ORTHO05D006983 4.9e-19 98.6 143 52.4
CSS0040245 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 9.3e-18 94.4 53 81.1
BolC7t42459H Brassica oleracea HOM05D005637 ORTHO05D006983 7.4e-15 84.7 53 73.6
C07p19400 Brassica napus HOM05D005637 ORTHO05D006983 9.6e-15 84.3 53 73.6
CSS0009360 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.8e-13 80.1 68 63.2
Pp3c15_19380 Physcomitrium patens HOM05D005637 ORTHO05D308751 2.5e-10 69.7 53 56.6
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 6.1e-09 65.1 83 42.2
Cfa025908 Carpinus fangiana HOM05D005637 ORTHO05D006983 2.3e-08 63.2 122 34.4
MD16G1068800 Malus domestica HOM05D005637 ORTHO05D006983 3.9e-08 62.4 63 69.8
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 3.3e-07 59.3 110 34.5
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 5.7e-07 58.5 84 38.1
Lalb_Chr05g0229881 Lupinus albus HOM05D000811 ORTHO05D004743 9.7e-07 57.8 112 34.8
Migut.H01149 Erythranthe guttata HOM05D000811 ORTHO05D004743 1.3e-06 57.4 96 39.6
RcHm_v2.0_Chr3g0483651 Rosa chinensis HOM05D000811 ORTHO05D004743 1.3e-06 57.4 100 35.0
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 1.6e-06 57.0 63 42.9
Nn6g32304 Nelumbo nucifera HOM05D000811 ORTHO05D004743 1.6e-06 57.0 94 36.2
SGA_v2.0_scaffold32G13256 Striga asiatica HOM05D000811 ORTHO05D004743 1.6e-06 57.0 94 37.2
unitig_699.g19711 Utricularia gibba HOM05D000811 ORTHO05D004743 1.6e-06 57.0 94 38.3
Manes.01G144800 Manihot esculenta HOM05D000811 ORTHO05D004743 2.2e-06 56.6 100 34.0
ATR0147G012 Amborella trichopoda HOM05D000811 ORTHO05D004743 2.8e-06 56.2 94 36.2
Duzib187G1507 Durio zibethinus HOM05D000811 ORTHO05D004743 2.8e-06 56.2 94 36.2
SalBow3G3608 Salvia bowleyana HOM05D000811 ORTHO05D004743 2.8e-06 56.2 94 38.3
SGA_v2.0_scaffold58G20433 Striga asiatica HOM05D000811 ORTHO05D004743 2.8e-06 56.2 94 37.2
CSS0048520 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.7e-06 55.8 68 69.1
Pp3c20_23120 Physcomitrium patens HOM05D000811 ORTHO05D004743 3.7e-06 55.8 94 35.1
Zm00001eb067280 Zea mays HOM05D000811 ORTHO05D004743 3.7e-06 55.8 98 35.7
FvH4_6g24550 Fragaria vesca HOM05D000811 ORTHO05D004743 4.8e-06 55.5 100 34.0
FAN02G2932 Fragaria x ananassa HOM05D000811 ORTHO05D004743 4.8e-06 55.5 100 34.0
FAN09G3320 Fragaria x ananassa HOM05D000811 ORTHO05D004743 4.8e-06 55.5 100 34.0
FAN14G0683 Fragaria x ananassa HOM05D000811 ORTHO05D004743 4.8e-06 55.5 100 34.0
TAR376G0878 Trochodendron aralioides HOM05D000811 ORTHO05D004743 4.8e-06 55.5 96 35.4
HPP92_003523 Vanilla planifolia HOM05D000811 ORTHO05D004743 4.8e-06 55.5 94 37.2
MSTRG.2701 Avicennia marina HOM05D000811 ORTHO05D004743 6.3e-06 55.1 94 36.2
CiPaw.07G057300 Carya illinoinensis HOM05D000811 ORTHO05D004743 6.3e-06 55.1 104 32.7
CDE02G4615 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 6.3e-06 55.1 63 44.4
Ca_22371_v3 Cicer arietinum L. HOM05D000811 ORTHO05D004743 6.3e-06 55.1 94 34.0
Dinv40074 Davidia involucrata HOM05D000811 ORTHO05D004743 6.3e-06 55.1 125 29.6
Duzib147G0350 Durio zibethinus HOM05D000811 ORTHO05D004743 6.3e-06 55.1 94 35.1
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 6.3e-06 55.1 128 34.4
Oeu035303.1 Olea europaea HOM05D000811 ORTHO05D004743 6.3e-06 55.1 94 35.1
Gorai.007G048100 Gossypium raimondii HOM05D000811 ORTHO05D004743 8.2e-06 54.7 94 35.1
Potri.007G013400 Populus trichocarpa HOM05D000811 ORTHO05D004743 8.2e-06 54.7 96 36.5


User provided reference genes

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