Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010960 Vanilla planifolia HOM05D001625 ORTHO05D002663 3.2e-50 201.4 101 100.0
Os06g0213400 Oryza sativa ssp. japonica HOM05D001625 ORTHO05D002663 3.0e-16 88.6 101 50.5
TAR381G1668 Trochodendron aralioides HOM05D001625 ORTHO05D002663 2.0e-15 85.9 100 46.0
Duzib052G1188 Durio zibethinus HOM05D001625 ORTHO05D002663 4.4e-15 84.7 96 47.9
Thecc.02G098800 Theobroma cacao HOM05D001625 ORTHO05D002663 4.4e-15 84.7 96 49.0
Duzib248G0518 Durio zibethinus HOM05D001625 ORTHO05D002663 9.7e-15 83.6 96 49.0
MD05G1077400 Malus domestica HOM05D001625 ORTHO05D002663 2.2e-14 82.4 101 47.5
MD10G1092600 Malus domestica HOM05D001625 ORTHO05D002663 2.2e-14 82.4 97 49.5
Zm00001eb373180 Zea mays HOM05D001625 ORTHO05D002663 6.3e-14 80.9 102 46.1
Prupe.8G122400 Prunus persica HOM05D001625 ORTHO05D002663 1.4e-13 79.7 100 46.0
MBI06_g24645_MAGBIO Magnolia biondii HOM05D001625 ORTHO05D002663 3.1e-13 78.6 106 47.2
Gohir.A03G190100 Gossypium hirsutum HOM05D001625 ORTHO05D002663 5.3e-13 77.8 96 45.8
Eucgr.L02396 Eucalyptus grandis HOM05D001625 ORTHO05D002663 7.0e-13 77.4 105 44.8
RcHm_v2.0_Chr6g0258221 Rosa chinensis HOM05D001625 ORTHO05D002663 7.0e-13 77.4 90 50.0
FAN24G1240 Fragaria x ananassa HOM05D001625 ORTHO05D002663 9.1e-13 77.0 90 50.0
Cfa005472 Carpinus fangiana HOM05D001625 ORTHO05D002663 2.0e-12 75.9 100 44.0
COL.COLO4_32672 Corchorus olitorius HOM05D001625 ORTHO05D002663 2.6e-12 75.5 92 46.7
CiPaw.06G143000 Carya illinoinensis HOM05D001625 ORTHO05D002663 3.5e-12 75.1 100 44.0
HanXRQChr16g0508481 Helianthus annuus HOM05D001625 ORTHO05D002663 3.5e-12 75.1 105 43.8
Sed0019855 Sechium edule HOM05D001625 ORTHO05D002663 3.5e-12 75.1 88 46.6
ATR0100G055 Amborella trichopoda HOM05D001625 ORTHO05D002663 4.5e-12 74.7 96 45.8
ECA236G2769 Erigeron canadensis HOM05D001625 ORTHO05D002663 4.5e-12 74.7 103 42.7
FvH4_2g06340 Fragaria vesca HOM05D001625 ORTHO05D002663 4.5e-12 74.7 90 48.9
FAN20G1968 Fragaria x ananassa HOM05D001625 ORTHO05D002663 4.5e-12 74.7 90 48.9
Nn5g30234 Nelumbo nucifera HOM05D001625 ORTHO05D002663 4.5e-12 74.7 96 42.7
CiPaw.05G052200 Carya illinoinensis HOM05D001625 ORTHO05D002663 5.9e-12 74.3 100 42.0
FAN15G0663 Fragaria x ananassa HOM05D001625 ORTHO05D002663 5.9e-12 74.3 90 48.9
Gohir.D02G210800 Gossypium hirsutum HOM05D001625 ORTHO05D002663 5.9e-12 74.3 96 45.8
Gorai.005G238800 Gossypium raimondii HOM05D001625 ORTHO05D002663 5.9e-12 74.3 96 45.8
Eucgr.G01459 Eucalyptus grandis HOM05D001625 ORTHO05D002663 7.7e-12 73.9 105 43.8
Atru.chr5.2741 Acer truncatum HOM05D001625 ORTHO05D002663 1.0e-11 73.6 100 41.0
Potri.004G142000 Populus trichocarpa HOM05D001625 ORTHO05D002663 1.0e-11 73.6 100 42.0
Dinv39326 Davidia involucrata HOM05D001625 ORTHO05D002663 1.3e-11 73.2 101 41.6
FAN27G1544 Fragaria x ananassa HOM05D001625 ORTHO05D002663 1.3e-11 73.2 90 47.8
CSS0000353 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D002663 1.7e-11 72.8 92 44.6
Gohir.A01G006400 Gossypium hirsutum HOM05D001625 ORTHO05D002663 2.9e-11 72.0 98 44.9
Gohir.D01G006500 Gossypium hirsutum HOM05D001625 ORTHO05D002663 2.9e-11 72.0 98 44.9
Gorai.002G007500 Gossypium raimondii HOM05D001625 ORTHO05D002663 2.9e-11 72.0 98 44.9
Ciclev10028545m.g Citrus clementina HOM05D001625 ORTHO05D002663 3.8e-11 71.6 96 43.8
HanXRQChr04g0128261 Helianthus annuus HOM05D001625 ORTHO05D002663 3.8e-11 71.6 93 44.1
MBI02_g17333_MAGBIO Magnolia biondii HOM05D001625 ORTHO05D002663 3.8e-11 71.6 105 45.7
Glyma.07G211400 Glycine max HOM05D001625 ORTHO05D002663 5.0e-11 71.2 100 43.0
CANSAT25G3564 Cannabis sativa HOM05D001625 ORTHO05D002663 6.5e-11 70.9 97 41.2
Cpa.g.sc62.27 Carica papaya HOM05D001625 ORTHO05D002663 6.5e-11 70.9 96 43.8
Potri.009G103500 Populus trichocarpa HOM05D001625 ORTHO05D002663 6.5e-11 70.9 100 41.0
Aqoxy5G01263 Aquilegia oxysepala HOM05D001625 ORTHO05D002663 8.5e-11 70.5 100 41.0
Glyma.02G133600 Glycine max HOM05D001625 ORTHO05D002663 8.5e-11 70.5 100 43.0
QL11p036180 Quercus lobata HOM05D001625 ORTHO05D002663 8.5e-11 70.5 100 46.0
TWI79G0065 Tripterygium wilfordii HOM05D001625 ORTHO05D002663 8.5e-11 70.5 101 45.5
GSVIVG01031764001 Vitis vinifera HOM05D001625 ORTHO05D002663 8.5e-11 70.5 95 44.2
Sabra09G0079200 Salix brachista HOM05D001625 ORTHO05D002663 1.1e-10 70.1 100 40.0
Sed0026214 Sechium edule HOM05D001625 ORTHO05D002663 1.1e-10 70.1 88 44.3
SGA_v2.0_scaffold90G27675 Striga asiatica HOM05D001625 ORTHO05D002663 1.1e-10 70.1 94 40.4
Nn1g05828 Nelumbo nucifera HOM05D001625 ORTHO05D002663 1.5e-10 69.7 105 41.9
THA.LOC104804372 Tarenaya hassleriana HOM05D001625 ORTHO05D002663 1.5e-10 69.7 95 41.1
HPP92_010956 Vanilla planifolia HOM05D001625 ORTHO05D002663 1.9e-10 69.3 33 100.0
Cc10_g04300 Coffea canephora HOM05D001625 ORTHO05D002663 2.5e-10 68.9 101 39.6
Haze_01840 Corylus avellana HOM05D001625 ORTHO05D002663 2.5e-10 68.9 61 57.4
Haze_01845 Corylus avellana HOM05D001625 ORTHO05D002663 2.5e-10 68.9 61 57.4
TAR625G0983 Trochodendron aralioides HOM05D001625 ORTHO05D002663 2.5e-10 68.9 63 57.1
Lsat_1_v5_gn_7_87121 Lactuca sativa HOM05D001625 ORTHO05D002663 3.2e-10 68.6 93 45.2
Lj4g0016453 Lotus japonicus HOM05D001625 ORTHO05D002663 3.2e-10 68.6 100 40.0
arahy.Tifrunner.gnm1.ann1.BL68M3 Arachis hypogaea HOM05D001625 ORTHO05D002663 4.2e-10 68.2 99 41.4
arahy.Tifrunner.gnm1.ann1.QRWV2F Arachis hypogaea HOM05D001625 ORTHO05D002663 4.2e-10 68.2 99 41.4
Ca_18696_v3 Cicer arietinum L. HOM05D001625 ORTHO05D002663 4.2e-10 68.2 100 43.0
ClCG05G009910 Citrullus lanatus HOM05D001625 ORTHO05D002663 4.2e-10 68.2 88 45.5
Oeu010574.1 Olea europaea HOM05D001625 ORTHO05D002663 4.2e-10 68.2 93 38.7
Psat7g123160 Pisum sativum HOM05D001625 ORTHO05D002663 4.2e-10 68.2 101 44.6
VMungo0251G2817 Vigna mungo HOM05D001625 ORTHO05D002663 4.2e-10 68.2 100 44.0
arahy.Tifrunner.gnm1.ann1.HA6K5H Arachis hypogaea HOM05D001625 ORTHO05D002663 7.2e-10 67.4 99 40.4
Sabra04G0093800 Salix brachista HOM05D001625 ORTHO05D002663 7.2e-10 67.4 104 41.3
PSO210G1621 Papaver somniferum HOM05D001625 ORTHO05D002663 9.4e-10 67.0 98 43.9
TPR.G30830 Trifolium pratense HOM05D001625 ORTHO05D002663 9.4e-10 67.0 101 43.6
arahy.Tifrunner.gnm1.ann1.7J23VE Arachis hypogaea HOM05D001625 ORTHO05D002663 1.2e-09 66.6 99 40.4
CsaV3_3G018670 Cucumis sativus L. HOM05D001625 ORTHO05D002663 1.2e-09 66.6 72 51.4
THA.LOC104819585 Tarenaya hassleriana HOM05D001625 ORTHO05D002663 1.2e-09 66.6 78 43.6
CDE10G1304 Ceratophyllum demersum HOM05D001164 ORTHO05D001031 1.6e-09 66.2 96 40.6
MELO3C019501.2 Cucumis melo HOM05D001625 ORTHO05D002663 2.1e-09 65.9 71 52.1
MSTRG.20147 Avicennia marina HOM05D001625 ORTHO05D002663 2.7e-09 65.5 95 36.8
Manes.10G066100 Manihot esculenta HOM05D001625 ORTHO05D002663 2.7e-09 65.5 93 40.9
Rhsim05G0082900 Rhododendron simsii HOM05D001625 ORTHO05D002663 2.7e-09 65.5 94 43.6
SalBow6G3773 Salvia bowleyana HOM05D001625 ORTHO05D002663 2.7e-09 65.5 97 41.2
Actinidia23266 Actinidia chinensis HOM05D001625 ORTHO05D002663 3.6e-09 65.1 97 38.1
Lj5A208G41 Lonicera japonica HOM05D001625 ORTHO05D002663 3.6e-09 65.1 106 39.6
Oeu003702.2 Olea europaea HOM05D001625 ORTHO05D002663 4.7e-09 64.7 93 38.7
Aa31LG8G13330 Aethionema arabicum HOM05D001625 ORTHO05D002663 6.1e-09 64.3 100 36.0
Medtr4g086420 Medicago truncatula HOM05D001625 ORTHO05D002663 6.1e-09 64.3 101 41.6
Potri.002G127600 Populus trichocarpa HOM05D001625 ORTHO05D002663 6.1e-09 64.3 103 40.8
Phvul.003G295500 Phaseolus vulgaris HOM05D001625 ORTHO05D002663 8.0e-09 63.9 100 41.0
vmacro21535 Vaccinium macrocarpon HOM05D001625 ORTHO05D002663 8.0e-09 63.9 93 39.8
A03p45560 Brassica napus HOM05D001625 ORTHO05D002663 1.0e-08 63.5 100 36.0
A07p05100 Brassica napus HOM05D001625 ORTHO05D002663 1.0e-08 63.5 97 39.2
BraA07t28303Z Brassica rapa HOM05D001625 ORTHO05D002663 1.0e-08 63.5 97 39.2
Hma1.2p1_0982F.1_g243910 Hydrangea macrophylla HOM05D001625 ORTHO05D002663 1.0e-08 63.5 106 37.7
BraA03t13689Z Brassica rapa HOM05D001625 ORTHO05D002663 1.4e-08 63.2 100 36.0
Nitab4.5_0000686g0030 Nicotiana tabacum HOM05D001625 ORTHO05D002663 1.8e-08 62.8 101 37.6
SGA_v2.0_scaffold32G13074 Striga asiatica HOM05D001625 ORTHO05D002663 1.8e-08 62.8 93 37.6
BcaC01g03059 Brassica carinata HOM05D001625 ORTHO05D002663 2.3e-08 62.4 103 36.9
C03p56560 Brassica napus HOM05D001625 ORTHO05D002663 2.3e-08 62.4 103 36.9
BolC3t17942H Brassica oleracea HOM05D001625 ORTHO05D002663 2.3e-08 62.4 103 36.9
CSS0040487 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D002663 2.3e-08 62.4 101 36.6
CARHR106070 Cardamine hirsuta HOM05D001625 ORTHO05D002663 2.3e-08 62.4 91 38.5
Oeu049971.1 Olea europaea HOM05D001625 ORTHO05D002663 2.3e-08 62.4 101 36.6
BcaB08g34608 Brassica carinata HOM05D001625 ORTHO05D002663 3.0e-08 62.0 100 36.0
CiPaw.15G061400 Carya illinoinensis HOM05D001625 ORTHO05D002663 3.0e-08 62.0 102 36.3
Dinv35972 Davidia involucrata HOM05D001625 ORTHO05D002663 3.0e-08 62.0 101 37.6
CSS0022663 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D002663 4.0e-08 61.6 105 39.0
Potri.014G031800 Populus trichocarpa HOM05D001625 ORTHO05D002663 4.0e-08 61.6 103 37.9
BcaC06g36078 Brassica carinata HOM05D001625 ORTHO05D002663 5.2e-08 61.2 91 39.6
C07p08100 Brassica napus HOM05D001625 ORTHO05D002663 5.2e-08 61.2 91 39.6
BolC7t41228H Brassica oleracea HOM05D001625 ORTHO05D002663 5.2e-08 61.2 91 39.6
DCAR_029028 Daucus carota HOM05D001625 ORTHO05D002663 5.2e-08 61.2 100 40.0
Carub.0003s2956 Capsella rubella HOM05D001625 ORTHO05D002663 6.7e-08 60.8 104 34.6
Manes.05G172100 Manihot esculenta HOM05D001625 ORTHO05D002663 8.8e-08 60.5 100 37.0
Nitab4.5_0001101g0100 Nicotiana tabacum HOM05D001625 ORTHO05D002663 8.8e-08 60.5 101 36.6
Sabra14G0022300 Salix brachista HOM05D001625 ORTHO05D002663 8.8e-08 60.5 103 37.9
Cc02_g18660 Coffea canephora HOM05D001625 ORTHO05D002663 1.1e-07 60.1 93 37.6
DCAR_012767 Daucus carota HOM05D001625 ORTHO05D002663 1.5e-07 59.7 96 38.5
AL3G47470 Arabidopsis lyrata HOM05D001625 ORTHO05D002663 2.0e-07 59.3 102 34.3
Migut.N01195 Erythranthe guttata HOM05D001625 ORTHO05D002663 2.0e-07 59.3 79 43.0
Dinv23611 Davidia involucrata HOM05D001625 ORTHO05D002663 2.6e-07 58.9 54 57.4
GSVIVG01009521001 Vitis vinifera HOM05D001625 ORTHO05D002663 2.6e-07 58.9 101 34.7
AT2G15695 Arabidopsis thaliana HOM05D001625 ORTHO05D002663 4.4e-07 58.2 105 37.1
Sp3g28970 Schrenkiella parvula HOM05D001625 ORTHO05D002663 4.4e-07 58.2 75 42.7
Lalb_Chr16g0384641 Lupinus albus HOM05D001625 ORTHO05D002663 7.5e-07 57.4 99 35.4
HPP92_016380 Vanilla planifolia HOM05D001625 ORTHO05D002663 7.5e-07 57.4 99 41.4
CAN.G371.33 Capsicum annuum HOM05D001625 ORTHO05D002663 9.7e-07 57.0 101 35.6
Solyc01g108620.3 Solanum lycopersicum HOM05D001625 ORTHO05D002663 1.3e-06 56.6 98 34.7
BcaB03g16312 Brassica carinata HOM05D001625 ORTHO05D002663 1.7e-06 56.2 75 46.7
Peaxi162Scf00252g01216 Petunia axillaris HOM05D001625 ORTHO05D002663 1.7e-06 56.2 101 34.7
Sopen01g050840 Solanum pennellii HOM05D001625 ORTHO05D002663 1.7e-06 56.2 98 34.7
Actinidia17861 Actinidia chinensis HOM05D001625 ORTHO05D002663 2.2e-06 55.8 93 38.7
Gohir.D05G204600 Gossypium hirsutum HOM05D001625 ORTHO05D002663 2.2e-06 55.8 103 35.9
Gorai.009G210900 Gossypium raimondii HOM05D001625 ORTHO05D002663 2.2e-06 55.8 103 35.9
Manes.18G032400 Manihot esculenta HOM05D001625 ORTHO05D002663 2.8e-06 55.5 97 37.1
Gohir.A05G201500 Gossypium hirsutum HOM05D001625 ORTHO05D002663 3.7e-06 55.1 103 35.9
PGSC0003DMG400025822 Solanum tuberosum HOM05D001625 ORTHO05D002663 4.8e-06 54.7 88 35.2
CiPaw.16G045700 Carya illinoinensis HOM05D001625 ORTHO05D002663 6.3e-06 54.3 103 35.0
Oeu043551.1 Olea europaea HOM05D001625 ORTHO05D002663 6.3e-06 54.3 97 37.1
Actinidia22619 Actinidia chinensis HOM05D001625 ORTHO05D002663 8.2e-06 53.9 86 38.4
Nitab4.5_0002097g0090 Nicotiana tabacum HOM05D001625 ORTHO05D002663 8.2e-06 53.9 87 39.1


User provided reference genes

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