Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010953 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.0e-210 736.5 370 100.0
HPP92_009515 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.5e-44 184.5 387 42.4
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 4.5e-25 119.8 380 33.2
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 5.9e-25 119.4 378 33.9
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.7e-24 117.9 369 32.8
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.5e-23 114.0 402 32.8
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 3.2e-23 113.6 378 33.3
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 5.5e-23 112.8 399 32.3
Potri.014G034900 Populus trichocarpa HOM05D001841 ORTHO05D001767 1.6e-22 111.3 387 31.3
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.3e-21 108.2 355 34.4
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 3.0e-21 107.1 397 32.5
Sabra14G0024800 Salix brachista HOM05D001841 ORTHO05D001767 3.9e-21 106.7 386 31.9
Gohir.A13G039000 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.1e-20 105.1 396 31.8
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.9e-20 104.4 323 35.0
FAN24G1402 Fragaria x ananassa HOM05D001841 ORTHO05D001767 5.7e-20 102.8 431 30.4
FvH4_2g06670 Fragaria vesca HOM05D001841 ORTHO05D001767 7.4e-20 102.4 434 30.6
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 9.7e-20 102.1 382 31.2
FAN15G3466 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.3e-19 101.7 434 30.6
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.3e-19 101.7 376 31.6
FAN20G1156 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.2e-19 100.9 434 30.4
Prupe.8G119300 Prunus persica HOM05D001841 ORTHO05D001767 4.8e-19 99.8 410 31.2
RcHm_v2.0_Chr6g0258711 Rosa chinensis HOM05D001841 ORTHO05D001767 6.3e-19 99.4 435 29.9
Sabra04G0095000 Salix brachista HOM05D001841 ORTHO05D001767 6.3e-19 99.4 397 29.7
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 8.2e-19 99.0 350 32.3
Duzib116G0233 Durio zibethinus HOM05D001841 ORTHO05D001767 8.2e-19 99.0 401 31.2
TWI56G0311 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 8.2e-19 99.0 368 33.2
ClCG02G005790 Citrullus lanatus HOM05D001841 ORTHO05D001767 1.1e-18 98.6 392 30.1
HPP92_004234 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.1e-18 98.6 291 34.7
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 1.4e-18 98.2 378 31.2
TWI36G0039 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 1.8e-18 97.8 350 31.7
MD10G1090600 Malus domestica HOM05D001841 ORTHO05D001767 3.1e-18 97.1 410 31.7
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 4.1e-18 96.7 374 30.2
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 6.9e-18 95.9 331 33.8
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 9.0e-18 95.5 361 31.9
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 1.5e-17 94.7 396 30.8
Rhsim07G0231600 Rhododendron simsii HOM05D001841 ORTHO05D001767 1.5e-17 94.7 365 30.1
Sabra02G0100700 Salix brachista HOM05D001841 ORTHO05D001767 2.0e-17 94.4 385 30.4
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 2.6e-17 94.0 309 34.0
Nn1g05855 Nelumbo nucifera HOM05D001841 ORTHO05D001767 2.6e-17 94.0 378 31.7
Gohir.A05G199948 Gossypium hirsutum HOM05D001841 ORTHO05D001767 3.4e-17 93.6 380 31.6
Duzib093G1523 Durio zibethinus HOM05D001841 ORTHO05D001767 4.5e-17 93.2 415 29.6
Migut.N02690 Erythranthe guttata HOM05D001841 ORTHO05D001767 4.5e-17 93.2 383 30.5
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 7.7e-17 92.4 390 32.1
MELO3C018439.2 Cucumis melo HOM05D001841 ORTHO05D001767 7.7e-17 92.4 401 30.9
Potri.009G105400 Populus trichocarpa HOM05D001841 ORTHO05D001767 1.0e-16 92.0 412 28.4
CDE06G1867 Ceratophyllum demersum HOM05D000370 ORTHO05D001366 1.3e-16 91.7 375 31.7
MSTRG.1330 Avicennia marina HOM05D001841 ORTHO05D001767 2.2e-16 90.9 397 31.0
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 2.2e-16 90.9 298 31.9
Sabra09G0080500 Salix brachista HOM05D001841 ORTHO05D001767 2.9e-16 90.5 395 28.6
Potri.002G128500 Populus trichocarpa HOM05D001841 ORTHO05D001767 3.8e-16 90.1 393 29.5
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 5.0e-16 89.7 379 31.9
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 5.0e-16 89.7 347 30.8
Gorai.009G209200 Gossypium raimondii HOM05D001841 ORTHO05D001767 5.0e-16 89.7 377 31.6
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 5.0e-16 89.7 366 30.1
Cfa005454 Carpinus fangiana HOM05D001841 ORTHO05D001767 1.1e-15 88.6 379 29.8
CsaV3_7G008710 Cucumis sativus L. HOM05D001841 ORTHO05D001767 1.4e-15 88.2 399 28.8
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 1.4e-15 88.2 246 32.9
Sed0008283 Sechium edule HOM05D001841 ORTHO05D001767 2.5e-15 87.4 293 30.4
Lj4C50T9 Lonicera japonica HOM05D001841 ORTHO05D001767 4.2e-15 86.7 381 29.9
Manes.17G093500 Manihot esculenta HOM05D001841 ORTHO05D001767 5.5e-15 86.3 393 29.5
Duzib052G0781 Durio zibethinus HOM05D001841 ORTHO05D001767 7.2e-15 85.9 394 28.7
Gohir.D05G203200 Gossypium hirsutum HOM05D001841 ORTHO05D001767 7.2e-15 85.9 379 31.9
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 7.2e-15 85.9 309 33.0
Aqoxy6G01410 Aquilegia oxysepala HOM05D001841 ORTHO05D001767 9.4e-15 85.5 380 29.7
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 9.4e-15 85.5 311 34.1
CiPaw.06G142300 Carya illinoinensis HOM05D001841 ORTHO05D001767 9.4e-15 85.5 419 29.8
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 9.4e-15 85.5 369 31.2
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 2.1e-14 84.3 294 30.6
MBI06_g08193_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 2.1e-14 84.3 360 31.1
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 2.7e-14 84.0 323 30.3
Lalb_Chr16g0384591 Lupinus albus HOM05D001841 ORTHO05D001767 2.7e-14 84.0 391 29.9
QL11p037275 Quercus lobata HOM05D001841 ORTHO05D001767 2.7e-14 84.0 389 30.1
AT2G26530 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 3.6e-14 83.6 308 31.5
Duzib132G0939 Durio zibethinus HOM05D001841 ORTHO05D001767 3.6e-14 83.6 399 28.6
Atru.chr13.625 Acer truncatum HOM05D001841 ORTHO05D001767 4.6e-14 83.2 360 30.0
Eucgr.I01168 Eucalyptus grandis HOM05D001841 ORTHO05D001767 4.6e-14 83.2 389 29.3
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 6.1e-14 82.8 306 31.7
TAR376G0142 Trochodendron aralioides HOM05D001841 ORTHO05D001767 6.1e-14 82.8 367 30.0
MELO3C021907.2 Cucumis melo HOM05D001841 ORTHO05D001767 2.3e-13 80.9 297 31.6
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 2.3e-13 80.9 370 30.3
Os06g0215100 Oryza sativa ssp. japonica HOM05D019308 ORTHO05D037137 2.3e-13 80.9 293 30.4
Dinv23581 Davidia involucrata HOM05D001841 ORTHO05D001767 3.0e-13 80.5 390 28.5
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 3.0e-13 80.5 366 32.5
Lsat_1_v5_gn_5_113300 Lactuca sativa HOM05D001841 ORTHO05D001767 3.9e-13 80.1 267 33.7
SEGI_11594 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 3.9e-13 80.1 365 30.1
THA.LOC104807355 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 3.9e-13 80.1 276 31.9
Cpa.g.sc62.35 Carica papaya HOM05D001841 ORTHO05D001767 5.1e-13 79.7 427 29.0
Lsat_1_v5_gn_4_124961 Lactuca sativa HOM05D001841 ORTHO05D001767 6.7e-13 79.3 350 28.0
Potri.004G143500 Populus trichocarpa HOM05D001841 ORTHO05D001767 8.8e-13 79.0 382 27.5
Thecc.02G097700 Theobroma cacao HOM05D001841 ORTHO05D001767 1.1e-12 78.6 409 28.9
Glyma.02G134500 Glycine max HOM05D001841 ORTHO05D001767 2.0e-12 77.8 373 29.5
COL.COLO4_26453 Corchorus olitorius HOM05D001841 ORTHO05D001767 2.5e-12 77.4 189 34.4
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 3.3e-12 77.0 310 31.9
QL02p006055 Quercus lobata HOM05D001841 ORTHO05D001767 4.3e-12 76.6 408 29.2
BolC3t15576H Brassica oleracea HOM05D001841 ORTHO05D001767 7.4e-12 75.9 344 29.7
Glyma.07G210700 Glycine max HOM05D001841 ORTHO05D001767 9.7e-12 75.5 352 29.8
SalBow6G4282 Salvia bowleyana HOM05D001841 ORTHO05D001767 1.3e-11 75.1 379 29.0
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.3e-11 75.1 310 31.9
C03p32340 Brassica napus HOM05D001841 ORTHO05D001767 1.7e-11 74.7 344 29.7
Haze_01864 Corylus avellana HOM05D001841 ORTHO05D001767 1.7e-11 74.7 382 27.5
Manes.18G034400 Manihot esculenta HOM05D001841 ORTHO05D001767 1.7e-11 74.7 380 28.2
Cc10_g03940 Coffea canephora HOM05D001841 ORTHO05D001767 2.2e-11 74.3 407 27.3
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 3.7e-11 73.6 337 27.6
Duzib248G1481 Durio zibethinus HOM05D001841 ORTHO05D001767 4.8e-11 73.2 412 26.9
FvH4_2g34940 Fragaria vesca HOM05D001841 ORTHO05D001767 4.8e-11 73.2 364 28.3
Gohir.D12G025300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 4.8e-11 73.2 366 29.8
HanXRQChr11g0324211 Helianthus annuus HOM05D001841 ORTHO05D001767 4.8e-11 73.2 255 32.2
AUR62016627 Chenopodium quinoa HOM05D001841 ORTHO05D001767 6.3e-11 72.8 394 28.7
Gohir.A12G025600 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.3e-11 72.8 359 30.1
Psat7g121880 Pisum sativum HOM05D001841 ORTHO05D001767 6.3e-11 72.8 325 31.1
ClCG09G017450 Citrullus lanatus HOM05D001841 ORTHO05D001767 1.1e-10 72.0 359 30.1
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 1.1e-10 72.0 346 29.8
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 1.1e-10 72.0 406 26.6
Zm00001eb193780 Zea mays HOM05D019308 ORTHO05D001767 1.1e-10 72.0 210 33.3
AL3G47510 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 1.8e-10 71.2 370 27.3
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 1.8e-10 71.2 368 29.6
FAN27G1965 Fragaria x ananassa HOM05D001841 ORTHO05D001767 2.4e-10 70.9 360 27.8
FAN15G0715 Fragaria x ananassa HOM05D001841 ORTHO05D001767 3.1e-10 70.5 360 28.1
RcHm_v2.0_Chr6g0307061 Rosa chinensis HOM05D001841 ORTHO05D001767 3.1e-10 70.5 313 28.4
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 3.1e-10 70.5 314 30.3
Actinidia00458 Actinidia chinensis HOM05D001841 ORTHO05D001767 4.1e-10 70.1 376 30.3
Ah.01g006730 Amaranthus hybridus HOM05D001841 ORTHO05D001767 5.3e-10 69.7 334 30.5
CDE10G1358 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 5.3e-10 69.7 359 27.6
Gohir.D01G006300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 5.3e-10 69.7 357 28.0
Os02g0761300 Oryza sativa ssp. japonica HOM05D019308 ORTHO05D037137 5.3e-10 69.7 291 29.2
Manes.05G170500 Manihot esculenta HOM05D001841 ORTHO05D001767 6.9e-10 69.3 232 32.8
Gohir.A01G006300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 9.1e-10 68.9 354 27.4
Zm00001eb327670 Zea mays HOM05D001841 ORTHO05D001767 9.1e-10 68.9 384 31.2
CDE10G1361 Ceratophyllum demersum HOM05D001841 ORTHO05D001767 1.2e-09 68.6 353 28.6
Gorai.002G007300 Gossypium raimondii HOM05D001841 ORTHO05D001767 1.5e-09 68.2 359 26.2
Gorai.008G025600 Gossypium raimondii HOM05D001841 ORTHO05D001767 1.5e-09 68.2 362 29.3
Manes.15G142400 Manihot esculenta HOM05D001841 ORTHO05D001767 2.0e-09 67.8 405 27.4
Ciclev10001332m.g Citrus clementina HOM05D001841 ORTHO05D001767 2.6e-09 67.4 378 26.5
CsaV3_2G014120 Cucumis sativus L. HOM05D001841 ORTHO05D001767 2.6e-09 67.4 352 28.1
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 2.6e-09 67.4 306 29.7
CSS0048284 Camellia sinensis var. sinensis HOM05D001841 ORTHO05D001767 4.5e-09 66.6 376 28.7
Carub.0003s2959 Capsella rubella HOM05D001841 ORTHO05D001767 4.5e-09 66.6 358 27.1
Oeu006155.1 Olea europaea HOM05D001841 ORTHO05D001767 4.5e-09 66.6 198 31.3
Sed0014466 Sechium edule HOM05D001841 ORTHO05D001767 4.5e-09 66.6 203 30.0
FAN20G1917 Fragaria x ananassa HOM05D001841 ORTHO05D001767 5.9e-09 66.2 374 27.3
Zm00001eb109480 Zea mays HOM05D001841 ORTHO05D001767 5.9e-09 66.2 376 30.6
Actinidia29858 Actinidia chinensis HOM05D000370 ORTHO05D001366 7.7e-09 65.9 317 30.0
HPP92_004256 Vanilla planifolia HOM05D001841 ORTHO05D001767 7.7e-09 65.9 303 30.0
HPP92_016748 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.0e-08 65.5 116 37.9
Nn4g25773 Nelumbo nucifera HOM05D001841 ORTHO05D001767 1.3e-08 65.1 152 36.2
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 1.7e-08 64.7 267 30.3
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 2.2e-08 64.3 185 33.0
CiPaw.05G053900 Carya illinoinensis HOM05D001841 ORTHO05D001767 2.2e-08 64.3 263 30.0
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 2.2e-08 64.3 284 28.5
AUR62011434 Chenopodium quinoa HOM05D001841 ORTHO05D001767 2.9e-08 63.9 217 30.9
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 3.8e-08 63.5 292 29.1
Lsat_1_v5_gn_1_19921 Lactuca sativa HOM05D001841 ORTHO05D001767 3.8e-08 63.5 301 29.9
PGR083G2104 Punica granatum HOM05D001841 ORTHO05D001767 5.0e-08 63.2 394 27.2
Oeu003301.1 Olea europaea HOM05D001841 ORTHO05D001767 6.5e-08 62.8 388 27.6
PSO017G5918 Papaver somniferum HOM05D001841 ORTHO05D001767 6.5e-08 62.8 375 26.4
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 8.5e-08 62.4 256 28.1
Rhsim05G0081500 Rhododendron simsii HOM05D001841 ORTHO05D001767 1.1e-07 62.0 307 30.3
Actinidia12979 Actinidia chinensis HOM05D001841 ORTHO05D001767 1.4e-07 61.6 336 29.8
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 1.9e-07 61.2 144 35.4
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 3.2e-07 60.5 302 29.8
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 3.2e-07 60.5 209 28.7
HanXRQChr09g0268031 Helianthus annuus HOM05D001841 ORTHO05D001767 4.2e-07 60.1 342 28.4
Sed0014858 Sechium edule HOM05D001841 ORTHO05D001767 7.2e-07 59.3 159 36.5
CANSAT25G3674 Cannabis sativa HOM05D001841 ORTHO05D001767 9.4e-07 58.9 405 24.7
ECA232G5028 Erigeron canadensis HOM05D001841 ORTHO05D001767 1.2e-06 58.5 354 26.0
A03p26960 Brassica napus HOM05D001841 ORTHO05D001767 1.6e-06 58.2 344 27.9
HPP92_016376 Vanilla planifolia HOM05D001841 ORTHO05D001767 2.1e-06 57.8 372 26.3
Ciclev10028742m.g Citrus clementina HOM05D001841 ORTHO05D001767 2.7e-06 57.4 370 28.4
Rhsim11G0168400 Rhododendron simsii HOM05D001841 ORTHO05D001767 2.7e-06 57.4 245 27.3
Oeu013688.1 Olea europaea HOM05D001841 ORTHO05D001767 4.7e-06 56.6 364 28.0
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 6.1e-06 56.2 238 28.2
Dinv02063 Davidia involucrata HOM05D014864 ORTHO05D001767 6.1e-06 56.2 75 41.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 7.9e-06 55.8 155 32.3
HanXRQChr04g0104251 Helianthus annuus HOM05D001841 ORTHO05D001767 7.9e-06 55.8 287 27.5
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 7.9e-06 55.8 243 29.2


User provided reference genes

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