Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010828 Vanilla planifolia HOM05D000135 ORTHO05D003168 3.2e-104 381.7 187 100.0
HPP92_010497 Vanilla planifolia HOM05D000135 ORTHO05D000203 2.5e-16 89.7 115 51.3
HPP92_017357 Vanilla planifolia HOM05D000135 ORTHO05D000203 1.7e-12 77.0 120 48.3
MD15G1168300 Malus domestica HOM05D000135 ORTHO05D000203 2.2e-12 76.6 122 44.3
RcHm_v2.0_Chr2g0087701 Rosa chinensis HOM05D000135 ORTHO05D000203 2.4e-11 73.2 116 44.0
PGR102G1813 Punica granatum HOM05D000135 ORTHO05D000203 3.2e-11 72.8 135 40.0
FAN26G2976 Fragaria x ananassa HOM05D000135 ORTHO05D000203 5.4e-11 72.0 116 43.1
FAN26G3183 Fragaria x ananassa HOM05D000135 ORTHO05D000203 5.4e-11 72.0 116 43.1
MBI15_g00957_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 6.0e-10 68.6 118 44.9
CSS0002820 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.0e-09 67.8 120 40.8
TAR626G1414 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.3e-09 67.4 121 42.1
Cfa003420 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.7e-09 67.0 119 41.2
CiPaw.03G248000 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.7e-09 67.0 120 40.0
Dinv41478 Davidia involucrata HOM05D000135 ORTHO05D000203 3.0e-09 66.2 120 37.5
MD02G1026800 Malus domestica HOM05D000135 ORTHO05D000203 3.9e-09 65.9 120 40.8
Os06g0172200 Oryza sativa ssp. japonica HOM05D000135 ORTHO05D000203 3.9e-09 65.9 60 53.3
DCAR_014900 Daucus carota HOM05D000135 ORTHO05D000203 5.1e-09 65.5 125 40.0
Sabra06G0048600 Salix brachista HOM05D000135 ORTHO05D000203 5.1e-09 65.5 57 56.1
Sed0012760 Sechium edule HOM05D000135 ORTHO05D000203 5.1e-09 65.5 119 38.7
Zm00001eb281700 Zea mays HOM05D000135 ORTHO05D000203 5.1e-09 65.5 59 52.5
Ciclev10009394m.g Citrus clementina HOM05D000135 ORTHO05D000203 6.6e-09 65.1 118 39.8
Duzib150G0370 Durio zibethinus HOM05D000135 ORTHO05D000203 6.6e-09 65.1 116 41.4
Hma1.2p1_0497F.1_g166350 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 6.6e-09 65.1 123 38.2
QL02p089754 Quercus lobata HOM05D000135 ORTHO05D000203 8.6e-09 64.7 130 40.8
Duzib168G1411 Durio zibethinus HOM05D000135 ORTHO05D000203 2.5e-08 63.2 118 39.8
Duzib187G1741 Durio zibethinus HOM05D000135 ORTHO05D000203 2.5e-08 63.2 122 39.3
Atru.chr7.1946 Acer truncatum HOM05D000135 ORTHO05D000203 3.3e-08 62.8 53 56.6
Lsat_1_v5_gn_5_91960 Lactuca sativa HOM05D000135 ORTHO05D000203 3.3e-08 62.8 61 50.8
Manes.06G047800 Manihot esculenta HOM05D000135 ORTHO05D000203 3.3e-08 62.8 119 41.2
Lj7P429T10 Lonicera japonica HOM05D000135 ORTHO05D000203 5.6e-08 62.0 53 52.8
HanXRQChr10g0315801 Helianthus annuus HOM05D000135 ORTHO05D000203 7.3e-08 61.6 61 49.2
Migut.D00745 Erythranthe guttata HOM05D000135 ORTHO05D000203 9.6e-08 61.2 58 51.7
Eucgr.L03626 Eucalyptus grandis HOM05D000135 ORTHO05D000203 9.6e-08 61.2 56 53.6
FvH4_1g02670 Fragaria vesca HOM05D000135 ORTHO05D000203 9.6e-08 61.2 59 50.8
FAN23G1141 Fragaria x ananassa HOM05D000135 ORTHO05D000203 9.6e-08 61.2 59 50.8
Gohir.D08G258800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 9.6e-08 61.2 124 41.1
Gorai.004G276300 Gossypium raimondii HOM05D000135 ORTHO05D000203 9.6e-08 61.2 123 40.7
Sabra18G0107800 Salix brachista HOM05D000135 ORTHO05D000203 9.6e-08 61.2 131 36.6
MSTRG.26425 Avicennia marina HOM05D000135 ORTHO05D000203 1.2e-07 60.8 125 40.0
HanXRQChr12g0356661 Helianthus annuus HOM05D000135 ORTHO05D000203 1.2e-07 60.8 77 44.2
DCAR_017781 Daucus carota HOM05D000135 ORTHO05D000203 2.1e-07 60.1 57 49.1
FAN28G1116 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.1e-07 60.1 59 49.2
Rhsim01G0062600 Rhododendron simsii HOM05D000135 ORTHO05D000203 2.1e-07 60.1 112 37.5
A04p32630 Brassica napus HOM05D000135 ORTHO05D000203 2.8e-07 59.7 64 46.9
C04p70330 Brassica napus HOM05D000135 ORTHO05D000203 2.8e-07 59.7 81 42.0
Migut.K00428 Erythranthe guttata HOM05D000135 ORTHO05D000203 2.8e-07 59.7 126 33.3
BraA04t18727Z Brassica rapa HOM05D000135 ORTHO05D000203 3.6e-07 59.3 81 42.0
AT2G43290 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 4.7e-07 58.9 98 36.7
MSTRG.18501 Avicennia marina HOM05D000135 ORTHO05D000203 4.7e-07 58.9 58 51.7
ClCG11G003310 Citrullus lanatus HOM05D000135 ORTHO05D000203 4.7e-07 58.9 123 35.0
ECA234G3705 Erigeron canadensis HOM05D000135 ORTHO05D000203 4.7e-07 58.9 60 50.0
Eucgr.H00370 Eucalyptus grandis HOM05D000135 ORTHO05D000203 4.7e-07 58.9 114 35.1
Gohir.D07G041800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.7e-07 58.9 126 38.9
Gorai.001G044300 Gossypium raimondii HOM05D000135 ORTHO05D000203 4.7e-07 58.9 126 38.9
Prupe.7G248200 Prunus persica HOM05D000135 ORTHO05D000203 4.7e-07 58.9 123 39.0
Thecc.09G131500 Theobroma cacao HOM05D000135 ORTHO05D000203 4.7e-07 58.9 120 38.3
TAR383G0909 Trochodendron aralioides HOM05D000135 ORTHO05D000203 4.7e-07 58.9 128 38.3
BcaC02g07191 Brassica carinata HOM05D000135 ORTHO05D000203 6.2e-07 58.5 81 40.7
BolC4t28536H Brassica oleracea HOM05D000135 ORTHO05D000203 6.2e-07 58.5 81 40.7
CiPaw.04G174700 Carya illinoinensis HOM05D000135 ORTHO05D000203 6.2e-07 58.5 121 38.8
Migut.N00671 Erythranthe guttata HOM05D000135 ORTHO05D000203 6.2e-07 58.5 54 53.7
Potri.017G029700 Populus trichocarpa HOM05D000135 ORTHO05D000203 6.2e-07 58.5 77 42.9
Potri.018G127100 Populus trichocarpa HOM05D000135 ORTHO05D000203 6.2e-07 58.5 133 36.8
Rhsim01G0063800 Rhododendron simsii HOM05D000135 ORTHO05D000203 6.2e-07 58.5 112 37.5
Potri.006G065900 Populus trichocarpa HOM05D000135 ORTHO05D000203 8.1e-07 58.2 130 37.7
CSS0019921 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.1e-06 57.8 128 38.3
Carub.0004s2576 Capsella rubella HOM05D000135 ORTHO05D000203 1.1e-06 57.8 98 37.8
Lalb_Chr03g0026101 Lupinus albus HOM05D000135 ORTHO05D000203 1.1e-06 57.8 58 46.6
Sp4g25400 Schrenkiella parvula HOM05D000135 ORTHO05D000203 1.1e-06 57.8 105 37.1
TWI63G0100 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.1e-06 57.8 122 39.3
arahy.Tifrunner.gnm1.ann1.6QX9MQ Arachis hypogaea HOM05D000227 ORTHO05D001491 1.4e-06 57.4 56 50.0
FvH4_4g28451 Fragaria vesca HOM05D000227 ORTHO05D001491 1.4e-06 57.4 81 37.0
Peaxi162Scf00313g00074 Petunia axillaris HOM05D000135 ORTHO05D000203 1.4e-06 57.4 122 32.8
Sabra07G0105100 Salix brachista HOM05D000135 ORTHO05D000203 1.4e-06 57.4 58 48.3
SMO137G0341 Selaginella moellendorffii HOM05D000135 ORTHO05D000203 1.4e-06 57.4 59 47.5
Duzib151G1013 Durio zibethinus HOM05D000135 ORTHO05D000203 1.8e-06 57.0 83 41.0
FvH4_7g34050 Fragaria vesca HOM05D000227 ORTHO05D001491 1.8e-06 57.0 56 50.0
FAN01G1331 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.8e-06 57.0 56 50.0
FAN03G2571 Fragaria x ananassa HOM05D000106 ORTHO05D002214 1.8e-06 57.0 56 50.0
FAN03G3211 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.8e-06 57.0 56 50.0
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 1.8e-06 57.0 70 45.7
PGSC0003DMG400026914 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.8e-06 57.0 92 33.7
AL4G41970 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 2.4e-06 56.6 82 37.8
CANSAT11G1453 Cannabis sativa HOM05D000135 ORTHO05D000203 2.4e-06 56.6 124 39.5
MELO3C004465.2 Cucumis melo HOM05D000135 ORTHO05D000203 2.4e-06 56.6 124 36.3
FvH4_2g17620 Fragaria vesca HOM05D000135 ORTHO05D000203 2.4e-06 56.6 58 44.8
FAN27G0169 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.4e-06 56.6 58 44.8
Gohir.D12G176200 Gossypium hirsutum HOM05D000227 ORTHO05D001491 2.4e-06 56.6 74 41.9
Gorai.008G188600 Gossypium raimondii HOM05D000227 ORTHO05D001491 2.4e-06 56.6 74 41.9
TWI34G0567 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 2.4e-06 56.6 122 38.5
arahy.Tifrunner.gnm1.ann1.T13EMM Arachis hypogaea HOM05D000135 ORTHO05D000203 3.1e-06 56.2 58 48.3
BcaC01g06692 Brassica carinata HOM05D000135 ORTHO05D000203 3.1e-06 56.2 54 48.1
A03p30480 Brassica napus HOM05D000135 ORTHO05D000203 3.1e-06 56.2 54 48.1
C03p36900 Brassica napus HOM05D000135 ORTHO05D000203 3.1e-06 56.2 54 48.1
BolC3t15997H Brassica oleracea HOM05D000135 ORTHO05D000203 3.1e-06 56.2 54 48.1
BraA03t12230Z Brassica rapa HOM05D000135 ORTHO05D000203 3.1e-06 56.2 54 48.1
Cpa.g.sc9.284 Carica papaya HOM05D000135 ORTHO05D000203 3.1e-06 56.2 63 44.4
COL.COLO4_02799 Corchorus olitorius HOM05D000135 ORTHO05D000203 3.1e-06 56.2 58 44.8
PGR142G2864 Punica granatum HOM05D000135 ORTHO05D000203 3.1e-06 56.2 123 37.4
Sp6g03330 Schrenkiella parvula HOM05D000135 ORTHO05D000203 3.1e-06 56.2 58 46.6
SEGI_12280 Sequoiadendron giganteum HOM05D000227 ORTHO05D001491 3.1e-06 56.2 55 49.1
Sc17g0001610 Simmondsia chinensis HOM05D000135 ORTHO05D000203 3.1e-06 56.2 58 44.8
Thecc.01G209500 Theobroma cacao HOM05D000135 ORTHO05D000203 3.1e-06 56.2 58 44.8
Ca_20790_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 4.0e-06 55.8 58 46.6
DCAR_023706 Daucus carota HOM05D000085 ORTHO05D000274 4.0e-06 55.8 55 49.1
DCAR_026198 Daucus carota HOM05D000227 ORTHO05D001491 4.0e-06 55.8 55 45.5
Migut.G01083 Erythranthe guttata HOM05D000135 ORTHO05D000203 4.0e-06 55.8 83 37.3
Eucgr.H00711 Eucalyptus grandis HOM05D000135 ORTHO05D000203 4.0e-06 55.8 58 43.1
FAN10G2121 Fragaria x ananassa HOM05D000106 ORTHO05D002214 4.0e-06 55.8 56 50.0
Glyma.15G030100 Glycine max HOM05D000135 ORTHO05D000203 4.0e-06 55.8 58 46.6
Gohir.A08G238100 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.0e-06 55.8 127 38.6
Hma1.2p1_0161F.1_g071520 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 4.0e-06 55.8 58 44.8
Psat4g113160 Pisum sativum HOM05D000227 ORTHO05D001491 4.0e-06 55.8 56 48.2
Psat7g209840 Pisum sativum HOM05D000135 ORTHO05D000203 4.0e-06 55.8 58 46.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 5.2e-06 55.5 58 44.8
MSTRG.17966 Avicennia marina HOM05D000135 ORTHO05D000203 5.2e-06 55.5 58 50.0
CARHR138380 Cardamine hirsuta HOM05D000135 ORTHO05D000203 5.2e-06 55.5 62 43.5
Duzib138G1141 Durio zibethinus HOM05D000135 ORTHO05D000203 5.2e-06 55.5 58 44.8
Glyma.13G159600 Glycine max HOM05D000135 ORTHO05D000203 5.2e-06 55.5 126 35.7
RcHm_v2.0_Chr1g0384321 Rosa chinensis HOM05D000227 ORTHO05D001491 5.2e-06 55.5 56 48.2
TPR.G34210 Trifolium pratense HOM05D000135 ORTHO05D000203 5.2e-06 55.5 58 46.6
Ah.09g224940 Amaranthus hybridus HOM05D000135 ORTHO05D000203 6.8e-06 55.1 117 41.0
CAN.G10.14 Capsicum annuum HOM05D000227 ORTHO05D001491 6.8e-06 55.1 72 41.7
CiPaw.01G099700 Carya illinoinensis HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 46.6
CiPaw.14G045100 Carya illinoinensis HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 44.8
Cc06_g08110 Coffea canephora HOM05D000135 ORTHO05D000203 6.8e-06 55.1 124 34.7
COL.COLO4_07674 Corchorus olitorius HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 46.6
FAN15G1859 Fragaria x ananassa HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 43.1
Glyma.17G112000 Glycine max HOM05D000135 ORTHO05D000203 6.8e-06 55.1 126 36.5
Gohir.A07G037700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 6.8e-06 55.1 120 39.2
Gohir.A10G138000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 48.3
Gohir.D10G128800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 48.3
Gorai.011G142200 Gossypium raimondii HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 48.3
Lj3P181T31 Lonicera japonica HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 46.6
Lj3P188T13 Lonicera japonica HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 46.6
Nitab4.5_0013265g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 6.8e-06 55.1 73 37.0
Oeu001598.2 Olea europaea HOM05D000135 ORTHO05D000203 6.8e-06 55.1 57 47.4
PSO675G0541 Papaver somniferum HOM05D000135 ORTHO05D000203 6.8e-06 55.1 93 37.6
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 6.8e-06 55.1 87 40.2
Rhsim02G0077300 Rhododendron simsii HOM05D000135 ORTHO05D000203 6.8e-06 55.1 60 45.0
RcHm_v2.0_Chr6g0282601 Rosa chinensis HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 44.8
THA.LOC104822464 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 6.8e-06 55.1 58 41.4
CANSAT01G0805 Cannabis sativa HOM05D000135 ORTHO05D000203 8.9e-06 54.7 58 44.8
Eucgr.D02220 Eucalyptus grandis HOM05D000227 ORTHO05D001491 8.9e-06 54.7 55 49.1
Manes.09G125300 Manihot esculenta HOM05D000227 ORTHO05D001491 8.9e-06 54.7 56 44.6
Medtr4g067270 Medicago truncatula HOM05D000135 ORTHO05D000203 8.9e-06 54.7 58 46.6
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 8.9e-06 54.7 70 44.3
Medtr8g069915 Medicago truncatula HOM05D000227 ORTHO05D001491 8.9e-06 54.7 56 46.4
Nn1g00188 Nelumbo nucifera HOM05D000227 ORTHO05D001491 8.9e-06 54.7 56 44.6
Nn1g09628 Nelumbo nucifera HOM05D000135 ORTHO05D000203 8.9e-06 54.7 58 43.1
Nitab4.5_0006002g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 8.9e-06 54.7 58 44.8
Peaxi162Scf00374g00053 Petunia axillaris HOM05D000135 ORTHO05D005042 8.9e-06 54.7 61 50.8
PGSC0003DMG400030892 Solanum tuberosum HOM05D000135 ORTHO05D000203 8.9e-06 54.7 119 35.3
THA.LOC104803322 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 8.9e-06 54.7 62 43.5
VMungo1383G2232 Vigna mungo HOM05D000135 ORTHO05D000203 8.9e-06 54.7 58 43.1


User provided reference genes

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